TCONS_00065818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065818
Unique NameTCONS_00065818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065818 ID=TCONS_00065818|Name=TCONS_00065818|organism=Clytia hemisphaerica|type=transcript|length=3501bp
GAATTCCCGGATTCCGCAAATTTACGCTGACCTGCGCTCGCTGCAATGTT
CCATAATGACGTATGAAGCATGAATGCGCATGCGTCGATGTTGCGAGATA
AAAACAACATACGGAACAAACAAAATTAGAGACAAGAAAAAGTTACCtgt
ggaaattttgtgaagcAAATcaagaatcttcattttatttaTCATCCATT
AGCTTCATAAATTCCACAAGAAAATGCATTACGCTTACCTTTTCAAATAC
ATTATCATTGGTGACACTGGTGTTGGGAAATCATGTTTACTCCTTCAATT
TACTGACAAACGTTTCCAACCAGTTCACGATTTAACGATCGGTGTTGAAT
TTGGTGCCCGAATGATCACAATAGACGGAAAACAAATCAAACTTCAAATT
TGGGACACAGCAGGACAAGAATCATTCAGGAGTATCACCAGATCATATTA
CAGAGGAGCAGCCGGTGCACTACTAGTATACGACATCACCAGGAGGGACA
CATTCAACCACTTGACGACTTGGTTAGAAGACGCTCGACAACATTCCAGT
TCCAATATGGTCATCATGCTTATCGGAAACAAAAGTGATTTAGAAGCCCG
AAGAGAAGTTAAAAAAGAAGAGGGTGAAGCATTCGCTCGTGAACACGGTC
TGATCTTCATGGAAACAAGCGCAAAGACAGCGGCCAATGTTGAAGAAGCA
TTCATCGGAACTGCAAAAGAAATCTATCAAAAAATACAAGAAGGAATACT
TGACTTAAATAACGAAtcGAATGGAATCAAGATCGGACCACAACATTCAG
CGGCTAGTCCTTCACCGATGGGTGGCGGAGCCGGCGGCCAACAAGGTGGT
GGTTGTTGTTGATCTTCCTTCTCTCTCACTTCATTCTTTTCGTGCAGAAT
TAATATACTTTATATTTCTATCTTATATCAGTCGTGCTGGGGATTACTAC
CTGTTTAACAAGGTTTGTTGCCTACTTCACAAGGATTAACTTTGTTTAAT
ACCAGCGATGGTTTGCTGGAGTGTGATCCAAAGAGAATATCGTAATAACA
TtatgaaaattaagttttaatgTTAACCACCTAGTTTTTATTACATATGC
AAGACATTTTGagcgaaaaatgaaattaattacTTGCAAAATCTTTCAAG
TTAAACTTGGGTATTTTGAACCCCTGTGATATCAAAAAAAGTATCCCAAG
GAATCCTTAGTGACTGCAACTGCAGAATTTGCATCTCTCAAGTTTTGTTT
TCGTAATTATCTTAAGGGAACTTactttggcgggaactaattttggcgaa
ttttgtctaaattcattcgccaaatccgccaaaattagttcctgccaaaa
taagttcccttaaggtatatctTATTTATTCCAAAAGTAAAACCGAAGAA
GAAAACAAACGAATTTTTGCATTATAAACGAGCATTTTAAACGTTAGGTC
AGACATATTCTATGAGGCCAGTTCATAAAATGTTAGTAGTAAATCCTGTT
ATATATTTTACTATGTATACATcactaaaaatttattttctctttCCAAT
TATATATCAACTCAgtaatttattattttgttttctgtgAGAGGTTTTTG
AATGCACTTGTTGACGTTTTTTTCAGTGAAGTGGCTATAATACAAGCAGT
GCAAATAACgtaaattttcttccattttgggactttttttcaaacttcgt
CCAGCTATAGAAGacataaaaaaaactttcttaagATTTGCATAACGTGC
CCTTTGCTTTGAATAATATTTTGATATCGTCACTTTTCTAGGACGTTTCA
CTTGTTCTAATTATTTTCTCACATAGCAAGCACGGGGTGATAGTAAAGTA
ttactttttagatttttttctactATAGGGTTTCtgaatgaaaaagttta
ttCGTTCCANCTGTTTAACAAGGTTTGTTGCCTACTTCACAAGGATTAAC
TTTGTTTAATACCAGCGATGGTTTGCTGGAGTGTGATCCAAAGAGAATAT
CGTAATAACATtatgaaaattaagttttaatgTTAACCACCTAGTTTTTA
TTACATATGCAAGACATTTTGagcgaaaaatgaaattaattacTTGCAAA
ATCTTTCAAGTTAAACTTGGGTATTTTGAACCCCTGTGATATCAAAAAAA
GTATCCCAAGGAATCCTTAGTGACTGCAACTGCAGAATTTGCATCTCTCA
AGTTTTGTTTTCGTAATTATCTTAAGGGAACTTactttggcgggaactaa
ttttggcgaattttgtctaaattcattcgccaaatccgccaaaattagtt
cctgccaaaataagttcccttaaggtatatctTATTTATTCCAAAAGTAA
AACCGAAGAAGAAAACAAACGAATTTTTGCATTATAAACGAGCATTTTAA
ACGTTAGGTCAGACATATTCTATGAGGCCAGTTCATAAAATGTTAGTAGT
AAATCCTGTTATATATTTTACTATGTATACATcactaaaaatttattttc
tctttCCAATTATATATCAACTCAgtaatttattattttgttttctgtgA
GAGGTTTTTGAATGCACTTGTTGACGATATTTTTCAGTGAAGTGGTTATA
ATACAAGCAGTGCAAATaacgtaattttttttccattttgggactttttt
tcaaacttcgtCCAGCTATAGAAgacataaaaaaacttttataagaTTTG
CATAACGTGCCCTTTGCTTTGAATAATATTTTGATATCGTCACTTTTCTG
GGACGTTTCacttgttcttattattttcTCACATAGCAAGCACGGGGTGA
TAGTAAAGTAttactttttagatttttttctactATAGGGTTTCtgaatg
aaaaagtttattCGTTCCATAGTTACTAGTTACAATGGGCCCTCTCTTAT
ACAAAAAAATCGATCCTTTTATGGAAAATCCTTCGAATAAAACTTTTCAT
TCGAAGTAGTTACAGTGGGATGGCTCTCTTTGATTCGAATTTCTATCATT
CATTATACAACTCCAAGACTTATATAATACTTGATGTAATTCGAATCAGA
ATCGAGAGCTATATAGTAAGTAGTAATCCAGTCTGGAAAGAAGAGAATAT
TTACGCCAGAGATTTCAAGGCGTAGCCTTTGTGTAAGCCTATGAAATCCA
AAATCTGCGCCGGAGATATCCGGCGTACATGCCTTACTTTCCAGATTCGA
CTATATTGTGaacaaaatgtattttttatttatggGTCAATCAATACCTT
TTTcgtttagaaattttgaaataaaaaaaaatctataaaacgtagaacat
ttttttagatatgaatttcaacctttttttttgtttatttgttttttttt
gtttgtgtaTCGATGTACTATGTCTTATTTGAATTGAAATATACAATCTA
AaccaaaatttatcttttttttatcttatatTGTAGAACCACAAGGCCTC
CGTCctatattttctattttggaatttttttaaaaacggGCATAACAAAA
G
Run BLAST on NCBI

transcript from alignment at scaffold_445:59394..73998-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065818 ID=TCONS_00065818|Name=TCONS_00065818|organism=Clytia hemisphaerica|type=transcript|length=14605bp|location=Sequence derived from alignment at scaffold_445:59394..73998- (Clytia hemisphaerica)
GAATTCCCGGATTCCGCAAATTTACGCTGACCTGCGCTCGCTGCAATGTT
CCATAATGACGTATGAAGCATGAATGCGCATGCGTCGATGTTGCGAGATA
AAAACAACATACGGAACAAACAAAATTAGAGACAAGAAAAAGTTACCTGT
GGAAATTTTGTGAAGCAAATCAAGAATCTTCATTTTATTTATCATCCATT
AGCTTCATAAATTCCACAAGAAAATGCATTACGCTTACCTTTTCAAATAC
ATTATCATTGGTGACACTGGTAAGCTCAAAAGTATTTGTATTTGGTTGTA
ATTTTGGCTTATTTTTCTGACCAATAAAGATTCTTTTAGTTTTAATCTGA
TCTCTGATCTTTACTGTTTGTTAGACATATAAGTGCCTAGTTCTTCCGTC
TGATAAAATCAACAACTTTTTCCAATCAATGGATTGTGATAACAATAGAT
AAAATTTGATCATTTTTCCACAGTCTAGCTTAATAGTGGTGAAGGCTTCT
TCGTAAAAGCGAAAGACATGTACCTATTTTTCGGATCCGGCATGCGGGAA
TATTGTCAGGACCTGCAGGCGACCTGGTAGGGTTGGGTATGGGTGTGGTT
TGGGTGTGGTTACGTATCAGATTGGCTAGGAATTTGGTTATTATAAATTA
TAAGCTAGGGTTAGAGTTGGAGCTCAAAACAAGCACTCTTTTGTGATTTT
ATAGTATAGTCTGTAGTTTGTACAATATGAATAGCCATTAATGATTTTTT
TGGTATGTATGACGTTAGGTTTCTGATCAGCGGGACCTTGCTTTTAGTGG
GTTCAAACCCCNATCTCTTAATACAGTCTGGTCTGTAGTTTGTACAATAT
AAATAGCCGTCAGAAACGCTCTTTCCGTGGCGCAGTGGATAAGGCATTGG
GTTTCAAAACATTGGAACTTTGCATTTGGGTTCGAATCCCCCGGTGGCGA
TCTGTCGGTAAGTCATTCAGTAAGTTAGAAAACATAGTAAATAACTCACA
CAAAACCAGAACGTCAGAAAAACTACGAACAAGAGACTGGAAAATACGAA
ATAAGTTCAGATCTGTCTTTCGTCTTTACGAAGAAGCCACGACCCTTAAC
AGTGGTCACTCACATATTGACTCTTCCCACAACTAACGTCAAACTGGTGC
TAATTTGAAAACCCTCCCACCCCCACTTCTTAACTTCAAAGTTTAAAAAT
TGACGAAACTCTAAATTTTCTCTTTCACTCTCCAGCGTTGTTTTGTCAGC
CATCTTTACTTTTGCTAAACGTTGAGTCGTTTGTTTTGGTTAAAATTGTT
CTATAAAATAGTGAAGTGAACAAACACTAAGGAGGATTAAAGAAATATGG
AAAGTAACATTGGTCACGGAATAAACATCTCAAAAATCTGTTTCTGGTAA
AATTTCTTAGCGTCACAGACTCTAACACCCCCACCCCGTTGCATCAATAT
GACGTTAGTCGTGGGAAGAATCGATATGTGAGTGACCCCTTATGATATTT
TTGCTGCTTGTTTAAACCCTTGCGCTTGGGCTTGGCGTAGGTAACGCGTC
TGCAGGGAGATTTTTTCCTGCAATGCAGGTTCAATCTGATTGGCCAGATT
TTTAGCGTATTACTTGGCAGTACTTTAGCGCGCATTTTGATAATTTCAAA
ATGCGTGCTCATAATTTATGGGAAAAAAAGAAAACAAATGAAAATGAAAA
CATAGATTCATTTAGAAACGAAATGACTGTTGGCTGGAAGTCTAAATACA
TCAGTCTAGCAGAATGTTAATTCTTCTTTCAGAAAAAATACTATAATTTG
TTTACCTTTATTCCTGCAGCTTCCCAACATCCAAGCTCTCAAACATCACA
AGCCAAATGAAATTACTTTCAATTTCCCGTAGAAATTATGCGATNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGTCTTAACATTTTTCCCTCGCAAG
TTTTGGGGGAAAACGAAAGTACTCTATATTTTACGTATGGGGAAGTGTAA
GAAAGATTTACAAAATAGAAAAGTTTCGTTTTGGGGTANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTAACGATAAGTTCCGTAGTTATGAG
GTTATCGCATATCAAGACAAAATGTGATGAATTTGCGCGGAAACGAAATT
TAACATTGTTCTAGGCTGTACATATGTGGTTGATGTTTTGATGTGGTTTT
TAGTAGTTTTGAAAGTCTTTACACGCGTGTCTGATTTAAAAAAGCGTGTG
TCAATGTTTGATCGAAGAAATTTGTTTTCACCAATGGTTAAGCTTTTGAC
TATATCTAAAGAATTAATAAACTTTGTTAAGATCTGTAAAAAGCTCTCTA
CTCCCAAATAGTTCTAGAATGAACCCTGAAAAAAACCAAGATAATTTGTG
GTGAAAACTTATTTCTTCAATCAAACATTGACACATGCTTTTTGAAATCA
GATCTTAAAGATTGAAGATGAAAATTCACGAAGAAAAAACAAACCTTAAG
CAAAGAAATTGCCTTTATAGCTCATTTTTCCATGAAAAATAGAAAAACTT
TCAGATATTTAAGTTCCCCAAACATTGTAGAATCTCTTAGTACACATGGC
AAAAGAAAAAAGAAACAATTAGAACCTTTAAATCAACTGAATTCTTTCCA
TAATCATGAAATAAAAAAGTATAAAATAAAATGGCGGAAGGACGTTTTTT
CAATGTATAGACATCAAAAAACGTCCTTCCGCCATTTTATTTTTTGAAAA
TGTGAAGTCAGAACTTCTTGTCACGTCTGGTCACGTGACAAATAAATTTC
CGACATCCAATGAAAATGCGCGGTTTGTATCATGTGCTAGAAAAAGTCAC
GTGACAGCAATTTCCATAGAATGGCCGTTCCGTTATATTTATAGCATAAG
AGAATACAAAGATTCAACCAGGGGGTTATAATTTATATTATTAGCTGGAG
CTTCTTGAGGCTAAGCTTTTAGGGTAATGTCAAGATTATTTGAGATTAAT
TGCTTTACCAAACAAAAAGATATTGAAAAGTCTTGACAGACCATTTTGTC
ATTTTTGTGTCATTTTGGTCAGCTGAACAGATTGATGCATTTCCATTGTT
TTGCCTTTTGGAACACACGTGTTTAGAGCTTTTGAAAGAGTTTTTATGGT
AAGTGGATTATGTTTGTTTGCCTGGGTTTCCAAAGTTCAGAAAGTCTGTC
AAGAAACTGTTTATAACATTCTGTGTCAGACTAAACTACCTGCACCAAGC
TTTATAATTTTAGAACTTTGTGAGGTGAGGTATTTTTTGTTTTTCTAAAA
TTATGAGCTTGGATTCCCAGGCTACGAGGAGCAGTACTAGTGCCTAGTTC
CTGATTGATGTACCAGTGTGTGACTGATTGCTTAAAAGAGAAAATCAGTG
CTCTACTTCAGTGCAACTGGAACTTCGATATTTGAGAATTACAATTTTAC
CAGCTTTTTAGCGATTTTTGCCTCACTAACCCAAATTTTGTAACCTCTTT
ACCTAAAGCACATCAAAATTAGAGTCTTTCAATGTTCTGAAAAAAAAATG
CATTGCAGAAAACAGGATCGATTCTCAACTACAAAATACATCTTTTGGTC
AATGGGTTTTTTCTGATGTTCTTCTTTCAAAGAATATGGATCACTTTCGT
TTTTCCCTTGAGCGTGCGAGAAAATAGGATTAGCTGGGTGAATAAAGATG
AGGTGGCAATCTTTTGCAGAGGGTGCTACTTAGTTTCTGCTTATTTTGCG
CTCACAATAGAATAATCCAAATACGGGGTGTTTCTTTTCTGAGAGATGCG
TATTATATTGAATATTATTAACTTATTCATTCAAGTATTTTTTAGCGTAA
CTTTTAATATATGTAATAGTTATCACACAGTGCAGAGTACAATATGGGAT
ACATTTTTCCAGTTCAGAATTTTTGTAATATTTAATATAGAAAACTCTGA
ACAAGAAATATAATATCCAATATTGTATGAGTGAAAGTGTGATAACTAGT
TTATTGTCAACTTGAAAAATATCAACAAACAATCTCTCTCCATTTGTCTC
TATGTTTTGTTTTGTTTTCACTTACTTTATTTTGATGAAATCAAGATAAA
AACATTCAAAAATTATTTGAATGCTCATGAAAAGATCAAAACACTCTTAT
TTGANCGATATTTGAGAATTACAATTTTACCAGCTTTTTAGCGATTTTTG
CCTCACTAACCCAAATTTTGTAACCTCTTTACCTAAAGCACATCAAAATT
AGAGTCTTTCAATGTTCTGAAAAAAAAATGCATTGCAGAAAACAGGATCG
ATTCTCAACTACAAAATACATCTTTTGGTCAATGGGTTTTTTCTGATGTT
CTTCTTTCAAAGAATATGGATCACTTTCGTTTTTCCCTTGAGCGTGCGAG
AAAATAGGATTAGCTGGGTGAATAAAGATGAGGTGGCAATCTTTTGCAGA
GGGTGCTACTTAGTTTCTGCTTATTTTGCGCTCACAATAGAATAATCCAA
ATACGGGGTGTTTCTTTTCTGAGAGATGCGTATTATATTGAATATTATTA
ACTTATTCATTCAAGTATTTTTTAGCGTAACTTTTAATATATGTAATAGT
TATCACACAGTGCAGAGTACAATATGGGATACATTTTTCCAGTTCAGAAT
TTTTGTAATATTTAATATAGAAAACTCTGAACAAGAAATATAATATCCAA
TATTGTATGAGTGAAAGTGTGATAACTAGTTTATTGTCAACTTGAAAAAT
ATCAACAAACAATCTCTCTCCGTTTGTCTCTATGTTTTGTTTTGTTTTCA
CTTACTTTATTTTGATGAAATCAAGATAAAAACCTTCAAAAATTATTTGA
ATGCTCATGAAAAGATCAAAACACTCTTATTTGACATTTTTTTTGTGATT
TGAGAGGTAAACAAAAACATTTCTGGGAATAAATTTGGGTAAAAAATACA
ACAAGAAAGTTTAAAATACAATCTCTCACTTACCAGACCCCTCTTTTGAA
CGCGGTTTTGCATTTGTACGGTACAATATGAAATACAGCATTTATGTACA
AAGGCTAAATAAAAAGCAAATGATGGCAATTCTGTTTTTTTCTCTAACAC
CTGGGAAAAGTTTTTTTGCTGACTTAGCTATTTTACAAATCTCGGAGAAG
AACTCCTATAAGAATGCTGATACATAACCCGATTGGTTAATTTTGGAACA
GCTTTAAGAAAGTCAAAATGGCAGATAATTTGGTGAGGAAATGTGTGGAA
TTTGTTGATGTTGATGGCTTGTTGAATCTGTAAAGAGAAGGACAAGTTTT
TTAATTGTTTCGTTTTTAGGGGTCTTTGGAAATCATCATTCATTTCTAAT
ATAATGAATGAACTAAAATTATGCCCTGGTGATGGTTGCGTGGAAAAGAT
GAACTTTAAAAATTTTTTTAAGAATTTTTTCTAAAGCTTAAATCTTTCAT
GACTTATGCTTCAACAAAGTGCGGTCCAAAAATGAGCCAATACTTAGCAT
TTTAGTAGGAGCAAATACTTAGCATTTGGATATAGAGGCTTGTATCTCTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAAAATTTAGCATTGACTGGACACAGA
GTTCTTGAAGGCCATGTCTTTATGCTAAAATTTGAAAACCCGAAGGTTAT
TGTTATTTCATAGCTCATTTAGGCGCAATTTGATGCTTGGATCATTCACG
AAGCTTAAAAAGTCTTTTCTGTGATCTTTGTCATAGTTAAATGGATCAAA
AACGAGCAGTATTTTAGCATTTTAACGGAAAATGTTAAATATTCTGGACC
CTGAAAAGGTTTTGAACATCAAATAAGTTATCATTAATGTTTGATACACA
ATTGGACAGAACTTCATGAGGTTATTTTATGTTCCTAGGTCTCAAAATGA
GCTGAATTTAGCAAAAATTAGACTAGGTGTAAAGTTAATTTTAGTAAGAG
AAGCAGAATAAATTGTAGTATTTCCAGTGGAAAATGCTAAATTTAGCTCC
AAGCGGGCCCTTTAACAGCTCAAATGTTTTATTGGTGTTAATAACTTGAT
TATTAAACTACTTCAAAGGAAGTTATGAAGGTTTTACACCCACTCCAGCC
TTTTAATTAGGTGTTTAGAAACATACTAGTAATTCTGCTGCAGTATTTTT
AGTGAAAAAATGCTAAATTTAGCTCCAAACGGGCCCTTTAACAGCTCAAG
TGCTATATTGGTGTTAACAACTTGATTATTCAACTATTTCAAAAGAAGTT
ATGGAAGTCTTATACCTAATCAAGCCTTTTACTTTGGTGTTTTGGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCTTTGGTGTTTTGGCACTTATTGTCAA
TGGGGAAATAGGTGCTAAAAAAGTGCTCTAAAAAGGGCCCCATAATAGGA
AAATGTGGGCCTTTTAACAATAGGCTACTCTAATTGCCATCCCTCTATGA
GAATCATTGGTCAGGTAGACAACTTCCTGGGTTTTTAGCTCTGATTTAGA
TCATTTTCCGAAACACATACAAATGCTAAAATTTGCTCCTAACTGGCCCC
TACAACAGCTAGAATTTTGGGAAAAGAACTTTTTGGGGTCCTATCATCAC
TACTAACATCCTGTGAAAATTTCGGACCTTCAAGTTACCCCAATCAAAAT
TTAGCTTTTTTGAAAATGCCAAAAACGAAACAATTAAAAAACATGTCCAG
AAAAGAAAGCAGAGCTTTTTTTAACCAAGGAATATCAAAGTTCATATGAA
CTGATCAGGATGATAAAAAAACTCATAAGGCGAGGCCACAATCACAAATA
ACTTGTGTCTACAGGAGAAGTGATGTTACGTGAAAGAATTCCTTGAAAAA
GCATGATTATGACAGTATAGTTGTCTTGGTTTGGCTTGGATTGAAGTTTT
TGTCTATGCTAAAGATCAAAATATTTTTTTCCTTGCAACCTTTCCAAACG
CAATAATGGTAATAGTCCCTTGTGCATCTTGTCACACAGTGATATCCTAC
TATTTAAATCGATTTGAGTTACTGTAAAACCTTGAAAATGGCCAATAAAT
GATCCAAAAAACATTGGAAACCTTGAAAATGTATGGTGAAAAAATTTGGT
AGATACCCTAAGGGGTTGGACAACTGGAATTTTCAGACAAAAAAAATCAG
AAATCCAGTCAAATTTCAAGAATTGCTACAGAAATTCTGCTCCATTTTTT
AGTTGAATTGTTAAAGATGATTCCATAAGACAGCCTGGGCGTGGAGAATC
CTCTTAATCGGATTGCTTATATTTTTCATGTTAATGATAAAAGATATTAA
TAATTAAATACTACTGGCAGGCAAAATTCTTAGTACTTCTGCCACTGGCC
GTTTTTCAGATTAGAAATTGAGTTTCCAGCAATTTGGTAACCACTTAGAG
CAAGTAATCAATACCAATGAGAGGCCTTGAAATCTTGAGTCCAATTTTGG
AGAAGAAATATGCCAGAAATCGCAGTTTTTTAAAGATTTTCATTGGACTT
TTTCCTTTTCGTTTCGAGACTGTTATGCAATATTTCATCTCATTGGGAAT
TTCGCCGGCAGTTTCTGCAGTTTCAGCAGTTTTGACACCAGTTATTTAAA
ATGATGAATTTATTTCTATTATTCATTCAGGTGTTGGGAAATCATGTTTA
CTCCTTCAATTTACTGACAAACGTTTCCAACCAGTTCACGATTTAACGAT
CGGTAGGTATTTATTATTAAGATTACTGACAAAATATATTTTTGAAATAA
CATAATAAAATTTCCACAAAGTTTCTTCACACTCGGAATAAACTAGTTTT
GGAGATTGGATTTTAAGGTCTACCTACACTACACAATATATTTCAGATAA
TATATTGATAGTATATTGCTGAATGCCGGCAAAATATTGAAAAGGTGTCC
ACAATATATTGTCAGCTCAATTTGAAATATTCCGACAATATAGGAGGATT
GTTTACAGAAATAAAATTCCTTTTTTTAATAGATCACCTATTGTTTACTC
CTTACATTACGGTTCGAAAAACATATTTTCGAATAGTGCTCACCAACATA
TTGTGTAGTCTTTTAAGTAGCCCTTTAGGATTTTTTTTCAAACTTAAATA
TTGATCACCGGTCATTTTCAATTCTATTAGTCTTTTTAATTCTATTAGTC
TTTTCAGTAAGTTTATGCCTCAATGACACCTTTTGAAATCAAAGTTACCA
CACTCCACAGTCTCAATTATGGTGGGTACTTTTAATGTCACTTTTTTTGT
AAAATCTATACAAGTTGTATAAAATTCTTTACAGGTGTTGAATTTGGTGC
CCGAATGATCACAATAGACGGAAAACAAATCAAACTTCAAATTTGGGACA
CAGTAAGTGAAGTTTTTAATTTACAAACCAAAACTTCTGTTTAGCTTCTA
TTATCAGGATCTTGGATTACAAATGCAGCTGTTTTTATCCACTCTACAAT
TCAAATACATTTGGGAACAGTGGCGGGTTTCACTCCAGCGACCAGGTCTA
ATTTGAGGTTTACGATGTCAATGCGGGTTCGTTAAATTTCACTTTGAAAA
TTATCTTAAATGTATAACATTGCTTTTATCCACACCTCTTCGTGCAAACA
TAGACTTATAAAGCCCAAAGGGCTAGATGTCGTACTTTTGCTGAAAAATA
TGCTGTGGTTGGATTGGAAATCCTACCTAGGTCACGTGACACAATAGAAT
TTCACGCTTGCCCAATCAGAAGCTTCGTGGGTTTTCGAAAACAATAGCAA
CAATATTTTTTCCGATATTCAATTTTTTTGCCTGCGATGGCTTAAAGCAC
GCCATCTAGCCCTTCGGGCTTTATAAATATATGGGTGCAACTCTTGCCAA
CCATTTCATTGTTTCTTCCAGGCAGGACAAGAATCATTCAGGAGTATCAC
CAGATCATATTACAGAGGAGCAGCCGGTGCACTACTAGTATACGACATCA
CCAGGTTTGTTCACCACACAATAATTCTGGGTGTCCCAATAAAAATTTAC
ATGTCTCCAAATGCTAATATTTTGACGTAATTTTGTTAAAACACATCTTT
TTATATGTCAGTTTTTTGTGGTTTTTTTAAATAACGCCTTTTGCATATTT
GCGTATAGAACAAATTATATTTCAAACTGATGTCTAAGATTTTAACACAA
TATGTAAAATGCCCTGAATTTCCTTTGTGTAAAATTTTGTGTTGATTAGA
AGTCAAAACGTCAGTTTATACCCGTTTGAAATCATGTAAAGTTTTTTTGG
TAGAAGGGTTGTTAGCTTTTTTTCTTAAGAAGTATCTTAAAGTATCGCTG
TTATGTCTTAAGTGGTTACTAAGCACTCATATAGCCAATGACATATGTAT
AGGAATCCTAAAACACTGTCAACAAGAAGTTTTCATATTTTCACAAATTG
TTACAAATATGTTCTTTAATAAATAGATAGTTAAGTAATGAACTATTTTC
TCTTCACAGGAGGGACACATTCAACCACTTGACGACTTGGTTAGAAGACG
CTCGACAACATTCCAGTTCCAATATGGTCATCATGCTTATCGGAAACAAA
AGGTCTGTCAGCAATAACTGTTATTGGTTTTCTTTACAATGTTTTGGTCT
TATAAAATATGACTAGACAAATACAGAGATTGTCAATATCATCTATATAG
TGGTGATGAAAAAATGTCTCACAGATTCACGTCAATGGCCTATAATAAGT
CAGAAGAAATTCTATAGAAGTTCGTTAGAATTCGTCATACGATCCTGAAA
ACCAAACCCCTCTACATGGCGTTGTTGTTTATTGTTCTTAAACTTCTTGT
AAATGTGTAAATTGTTTCTTAAATTCTTTCTTTCTATTTTAGTGATTTAG
AAGCCCGAAGAGAAGTTAAAAAAGAAGAGGTATGTCTCGTTGGTCATATT
TTCACCTCATAAATCTTACTTAACTATTTGGGTGAGCTTTTTAAACCCGT
GTGTTTTTTAGCACTCCAGTTTTCCTTGTTTAGGCTTCCTTTAATTTCAT
CTCAACTGACTGGCAAAGGCACTGACAGTACTCTTTTTCTCAGCATTTTC
GTTTTTGATTTTTTGCAAGTTAACAAGAAGTTGAGTCTATAGACTTCTAC
AGTTGATCTGTTTTAAATTTTACTTTACTGCTGATCAAATTTTATTGTGG
ATGTTTTATTACTTAATTAGGGTGAAGCATTCGCTCGTGAACACGGTCTG
ATCTTCATGGAAACAAGCGCAAAGACAGCGGCCAATGTTGAAGAAGCATT
CATCGGAACTGCAAAAGAAATCTATCAAAAAATACAAGAAGGAATACTTG
ACTTAAATAACGAAGTGAGTAGGGTAACATACAGTTAATCAGATTTGTGT
ATTAGTGGACATGAAAACACCTGTAATGTTTTACCTGTAGTATTTTTTTG
TGGCGTATTCTTTAATTCCTGAACGAATGATGTTGAATCTAGATTCTCGT
TCTTGTACTTGCCTCCTACTGTATTCAAGTCAGGTGTCAATTTTATATCA
GTATTTAAAGTGAAAAGTCGTCATTATTGAAAATATTCAAGACTTATTGA
AATTTCTTTATTTTTTTTAGTCGAATGGAATCAAGATCGGACCACAACAT
TCAGCGGCTAGTCCTTCACCGATGGGTGGCGGAGCCGGCGGCCAACAAGG
TGGTGGTTGTTGTTGATCTTCCTTCTCTCTCACTTCATTCTTTTCGTGCA
GAATTAATATACTTTATATTTCTATCTTATATCAGTCGTGCTGGGGATTA
CTACCTGTTTAACAAGGTTTGTTGCCTACTTCACAAGGATTAACTTTGTT
TAATACCAGCGATGGTTTGCTGGAGTGTGATCCAAAGAGAATATCGTAAT
AACATTATGAAAATTAAGTTTTAATGTTAACCACCTAGTTTTTATTACAT
ATGCAAGACATTTTGAGCGAAAAATGAAATTAATTACTTGCAAAATCTTT
CAAGTTAAACTTGGGTATTTTGAACCCCTGTGATATCAAAAAAAGTATCC
CAAGGAATCCTTAGTGACTGCAACTGCAGAATTTGCATCTCTCAAGTTTT
GTTTTCGTAATTATCTTAAGGGAACTTACTTTGGCGGGAACTAATTTTGG
CGAATTTTGTCTAAATTCATTCGCCAAATCCGCCAAAATTAGTTCCTGCC
AAAATAAGTTCCCTTAAGGTATATCTTATTTATTCCAAAAGTAAAACCGA
AGAAGAAAACAAACGAATTTTTGCATTATAAACGAGCATTTTAAACGTTA
GGTCAGACATATTCTATGAGGCCAGTTCATAAAATGTTAGTAGTAAATCC
TGTTATATATTTTACTATGTATACATCACTAAAAATTTATTTTCTCTTTC
CAATTATATATCAACTCAGTAATTTATTATTTTGTTTTCTGTGAGAGGTT
TTTGAATGCACTTGTTGACGTTTTTTTCAGTGAAGTGGCTATAATACAAG
CAGTGCAAATAACGTAAATTTTCTTCCATTTTGGGACTTTTTTTCAAACT
TCGTCCAGCTATAGAAGACATAAAAAAAACTTTCTTAAGATTTGCATAAC
GTGCCCTTTGCTTTGAATAATATTTTGATATCGTCACTTTTCTAGGACGT
TTCACTTGTTCTAATTATTTTCTCACATAGCAAGCACGGGGTGATAGTAA
AGTATTACTTTTTAGATTTTTTTCTACTATAGGGTTTCTGAATGAAAAAG
TTTATTCGTTCCANCTGTTTAACAAGGTTTGTTGCCTACTTCACAAGGAT
TAACTTTGTTTAATACCAGCGATGGTTTGCTGGAGTGTGATCCAAAGAGA
ATATCGTAATAACATTATGAAAATTAAGTTTTAATGTTAACCACCTAGTT
TTTATTACATATGCAAGACATTTTGAGCGAAAAATGAAATTAATTACTTG
CAAAATCTTTCAAGTTAAACTTGGGTATTTTGAACCCCTGTGATATCAAA
AAAAGTATCCCAAGGAATCCTTAGTGACTGCAACTGCAGAATTTGCATCT
CTCAAGTTTTGTTTTCGTAATTATCTTAAGGGAACTTACTTTGGCGGGAA
CTAATTTTGGCGAATTTTGTCTAAATTCATTCGCCAAATCCGCCAAAATT
AGTTCCTGCCAAAATAAGTTCCCTTAAGGTATATCTTATTTATTCCAAAA
GTAAAACCGAAGAAGAAAACAAACGAATTTTTGCATTATAAACGAGCATT
TTAAACGTTAGGTCAGACATATTCTATGAGGCCAGTTCATAAAATGTTAG
TAGTAAATCCTGTTATATATTTTACTATGTATACATCACTAAAAATTTAT
TTTCTCTTTCCAATTATATATCAACTCAGTAATTTATTATTTTGTTTTCT
GTGAGAGGTTTTTGAATGCACTTGTTGACGATATTTTTCAGTGAAGTGGT
TATAATACAAGCAGTGCAAATAACGTAATTTTTTTTCCATTTTGGGACTT
TTTTTCAAACTTCGTCCAGCTATAGAAGACATAAAAAAACTTTTATAAGA
TTTGCATAACGTGCCCTTTGCTTTGAATAATATTTTGATATCGTCACTTT
TCTGGGACGTTTCACTTGTTCTTATTATTTTCTCACATAGCAAGCACGGG
GTGATAGTAAAGTATTACTTTTTAGATTTTTTTCTACTATAGGGTTTCTG
AATGAAAAAGTTTATTCGTTCCATAGTTACTAGTTACAATGGGCCCTCTC
TTATACAAAAAAATCGATCCTTTTATGGAAAATCCTTCGAATAAAACTTT
TCATTCGAAGTAGTTACAGTGGGATGGCTCTCTTTGATTCGAATTTCTAT
CATTCATTATACAACTCCAAGACTTATATAATACTTGATGTAATTCGAAT
CAGAATCGAGAGCTATATAGTAAGTAGTAATCCAGTCTGGAAAGAAGAGA
ATATTTACGCCAGAGATTTCAAGGCGTAGCCTTTGTGTAAGCCTATGAAA
TCCAAAATCTGCGCCGGAGATATCCGGCGTACATGCCTTACTTTCCAGAT
TCGACTATATTGTGAACAAAATGTATTTTTTATTTATGGGTCAATCAATA
CCTTTTTCGTTTAGAAATTTTGAAATAAAAAAAAATCTATAAAACGTAGA
ACATTTTTTTAGATATGAATTTCAACCTTTTTTTTTGTTTATTTGTTTTT
TTTTGTTTGTGTATCGATGTACTATGTCTTATTTGAATTGAAATATACAA
TCTAAACCAAAATTTATCTTTTTTTTATCTTATATTGTAGAACCACAAGG
CCTCCGTCCTATATTTTCTATTTTGGAATTTTTTTAAAAACGGGCATAAC
AAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041231XLOC_041231Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065818-exon-scaffold_445-1575043694:73730..73998TCONS_00065818-exon-scaffold_445-1575043694:73730..73998Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1575043694:64997..65068TCONS_00065818-exon-scaffold_445-1575043694:64997..65068Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1575043694:64347..64414TCONS_00065818-exon-scaffold_445-1575043694:64347..64414Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1575043694:63745..63827TCONS_00065818-exon-scaffold_445-1575043694:63745..63827Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1575043694:63147..63239TCONS_00065818-exon-scaffold_445-1575043694:63147..63239Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1575043694:62820..62856TCONS_00065818-exon-scaffold_445-1575043694:62820..62856Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1575043694:62385..62528TCONS_00065818-exon-scaffold_445-1575043694:62385..62528Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1575043694:59394..62128TCONS_00065818-exon-scaffold_445-1575043694:59394..62128Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1510915933:73730..73998TCONS_00065818-exon-scaffold_445-1510915933:73730..73998Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1510915933:64997..65068TCONS_00065818-exon-scaffold_445-1510915933:64997..65068Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1510915933:64347..64414TCONS_00065818-exon-scaffold_445-1510915933:64347..64414Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1510915933:63745..63827TCONS_00065818-exon-scaffold_445-1510915933:63745..63827Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1510915933:63147..63239TCONS_00065818-exon-scaffold_445-1510915933:63147..63239Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1510915933:62820..62856TCONS_00065818-exon-scaffold_445-1510915933:62820..62856Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1510915933:62385..62528TCONS_00065818-exon-scaffold_445-1510915933:62385..62528Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1510915933:59394..62128TCONS_00065818-exon-scaffold_445-1510915933:59394..62128Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1491911889:73730..73998TCONS_00065818-exon-scaffold_445-1491911889:73730..73998Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1491911889:64997..65068TCONS_00065818-exon-scaffold_445-1491911889:64997..65068Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1491911889:64347..64414TCONS_00065818-exon-scaffold_445-1491911889:64347..64414Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1491911889:63745..63827TCONS_00065818-exon-scaffold_445-1491911889:63745..63827Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1491911889:63147..63239TCONS_00065818-exon-scaffold_445-1491911889:63147..63239Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1491911889:62820..62856TCONS_00065818-exon-scaffold_445-1491911889:62820..62856Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1491911889:62385..62528TCONS_00065818-exon-scaffold_445-1491911889:62385..62528Clytia hemisphaericaexon
TCONS_00065818-exon-scaffold_445-1491911889:59394..62128TCONS_00065818-exon-scaffold_445-1491911889:59394..62128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_445supercontigscaffold_445:59394..73998 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.286499	0.244142	0.447678	0.436564	0.347005	0.269613	0.426083	0.486155	0.0307901	0.227678	0.109449	0.0969949	0.167951	0.0498175	0.0616921	0.0220173	0	0.0836395	0.114408	0.0800716	0.547879	0.106343	0.462785	0.609659	0.075682	0.169756	0.514072	0.273377	0.332367	0.67525
Blast
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BLAST of TCONS_00065818 vs. Swiss-Prot (Human)
Match: RAB2A (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 382.104 bits (980), Expect = 1.706e-123
Identity = 181/191 (94.76%), Postives = 188/191 (98.43%), Query Frame = 2 
Query:  224 MHYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSSSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFIGTAKEIYQKIQEGILDLNNESNGIKIGPQH 796
            M YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHS+SNMVIMLIGNKSDLE+RREVKKEEGEAFAREHGLIFMETSAKTA+NVEEAFI TAKEIY+KIQEG+ D+NNE+NGIKIGPQH
Sbjct:    1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQH 191
The following BLAST results are available for this feature:
BLAST of TCONS_00065818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB2A1.706e-12394.76Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
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