|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065809 ID=TCONS_00065809|Name=TCONS_00065809|organism=Clytia hemisphaerica|type=transcript|length=1954bp
AATACATTAAAATAatgcattaaatttcaaaaatgccTGAAAATCATGCA
TTGGAAGAGCTAAATGTGAATAGCAATGTCAAAATGTCGCAGAATCACTG
AGACTCGTACTCCGAGAAAGGTTCTTTCCGCTGAGATGCTATCCCGCGAT
TTTCATAGACGGGGACTTACCACACCCTTGCGCATGCGCGAGGCCATATT
CATTTTTTCGGCCGGCTGGTATAGTATCCAAAGTATGATGTGGGAGAAGT
TTCCAATTTCAAAGTGAAGTGAAATAAAGACTTTTAGATGTAGAATTATT
TGAAGCGGGCGAGGATAACTCCTCGAATCTCTTACACATACGTTGAGGAT
GGGCTGCGTCAGCAGTACTCAAGATGATGAAGCAAAGAAACGTAGTAAAA
AGATTGATAATGACATAAAACAAGACAAAATTGCCTACCGAGCAACACAT
CGATTATTATTACTTGgTGCTGGTGAAAGTGGTAAAAGTACGATTGTAAA
GCAGATGAGAATTCTTCATGTGGACGGATTCAATGAACAggagaaaaaag
aaaaaatagagGATATAAAACGAAATATAAAAGAAGGAATACTCGTAAGT
TTATTTTATTGATCGTTTAGCTGTTTTCATAACACTGCCGTTCTCGGTCC
TTTTCGCCGAAAATAATATCACGTGATAATTATCCGCGCACAGATTTTCG
CAGTACAAAACCTTATTCGAAGCAGTCACATGACTAAAATATCACGTGCT
CATTTCgttcaaaacaacattttccgTCTCTATGTGGCTGAAAAGTTGCG
TAGCTGCAAAATATACAAGGCTCGGTTAAAAGGTCATATTATCCCAAACA
TACAAACTTTGTATAATAAGTTTCCTCCCttctaaattttgacaaaataa
caGCTCGATAAAAACTTAGGTCATCCTTGGCATTTTTTTAGATCCAAATT
ATGGCCTATGAACTCTTTTTACACTCAAAAATGAAGACTGTTGTTTGCTT
GAAATGTAATATTTTGGTTTAAGTCAAAGTTTCTTTaccatttcaatgtt
ttttatatttattttctatGACTACATTCAAACTAAAAACACCTTAGTTC
CACTGCTCATAAGGCAATCTTGAGGTTATTTTGTTTGAGTCTAGTATGAC
AAGTTTTCGTTGATAGAAATAAGACATCAACACATTACAGTATCAGCCAG
TTTCGCCTCTTTTGCCAAAGACACTCCTAGATAATCTAGAGTTTTTTATT
GATCTTGATTTGTCTCCCTGTAACCTGAGATccgattgtggttgttttct
gcccaccacgctgaagctctaaagggatgggtgaaaacatacaatctgac
gaatatgctatctcaaaatcgtaaggaccggtttgtctaaaaggactggg
gatgacaacaaagttgcgtgattgtgtttacaAATAGGgagccgtatcag
tttttgactttctggcgcacaacaagattctTGTTGTAAAATTTCCCGCG
GGAGGACTATTTTCCTCAGATGTATAATTTTCAAGTGCCTTCAGAGGTTT
ACCGTGCATGTAAGAAAATTATGAACAGCTGTTATCAGGTTATCTCCCTG
TTGCTTGCAAACCAACacccttcaaaaaagcagtgGCTAGCTCAATGATT
TCTTTTGGTTAACAACACAAACTGGCTTGCATGATCATTTACAGAACAAG
ATTATGTTGGttattttttcctcattttttttgtaatcacAGTAgttaga
gtctctttaactcaaacTTCTATAACTGGAACAAGTTTCGTTCCGTTTTT
GCGTGGTCTTCTCATACTGCAAAGGAGAAATTCCCTGGATCGTTTTTAGA
CTGTTGTAATTACATTTTTGAGCTTAAATCAAACTAGCCTGGAAATCCAA
GCGTTACACTTTTtccacagtctagtttatgatatgtttgctgcttgttt
aacg Run BLAST on NCBI transcript from alignment at scaffold_445:188312..190521+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065809 ID=TCONS_00065809|Name=TCONS_00065809|organism=Clytia hemisphaerica|type=transcript|length=2210bp|location=Sequence derived from alignment at scaffold_445:188312..190521+ (Clytia hemisphaerica)
AATACATTAAAATAatgcattaaatttcaaaaatgccTGAAAATCATGCA
TTGGAAGAGCTAAATGTGAATAGCAATGTCAAAATGTCGCAGAATCACTG
AGACTCGTACTCCGAGAAAGGTTCTTTCCGCTGAGATGCTATCCCGCGAT
TTTCATAGACGGGGACTTACCACACCCTTGCGCATGCGCGAGGCCATATT
CATTTTTTCGGCCGGCTGGTATAGTATCCAAAGTATGATGTGGGAGAAGT
TTCCAATTTCAAAGTGAAGTGAAATAAAGACTTTTAGATGTAGAATTATT
TGAAGCGGGCGAGGATAACTCCTCGAATCTCTTACACATACGTTGAGGAT
GGGCTGCGTCAGCAGTACTCAAGATGATGAAGCAAAGAAACGTAGTAAAA
AGATTGATAATGACATAAAACAAGACAAAATTGCCTACCGAGCAACACAT
CGATTATTATTACTTGGtatattgttgttgtttttgtttttattattgtt
gttgtttttgtacaTGTTGTATGGAATTATTTGGTTTAGTATGTTTGGTA
GAGTATAGTTCTAAGAGAAtactgttttattttgtttaaaggTGCTGGTG
AAAGTGGTAAAAGTACGATTGTAAAGCAGATGAGAATTCTTCATGTGGAC
GGATTCAATGAACAGTAAGTTGCCATGTTTTTCACAGATAAGGGGCTCCT
CCTTAAATTATAATTGTCCTAGATTCATGTTAGATGGAAGCtaaattcta
aaatttctaaCTCTGATTTGAAAAACATTCTATCTTCGTTTCTagggaga
aaaaagaaaaaatagagGATATAAAACGAAATATAAAAGAAGGAATACTC
GTAAGTTTATTTTATTGATCGTTTAGCTGTTTTCATAACACTGCCGTTCT
CGGTCCTTTTCGCCGAAAATAATATCACGTGATAATTATCCGCGCACAGA
TTTTCGCAGTACAAAACCTTATTCGAAGCAGTCACATGACTAAAATATCA
CGTGCTCATTTCgttcaaaacaacattttccgTCTCTATGTGGCTGAAAA
GTTGCGTAGCTGCAAAATATACAAGGCTCGGTTAAAAGGTCATATTATCC
CAAACATACAAACTTTGTATAATAAGTTTCCTCCCttctaaattttgaca
aaataacaGCTCGATAAAAACTTAGGTCATCCTTGGCATTTTTTTAGATC
CAAATTATGGCCTATGAACTCTTTTTACACTCAAAAATGAAGACTGTTGT
TTGCTTGAAATGTAATATTTTGGTTTAAGTCAAAGTTTCTTTaccatttc
aatgttttttatatttattttctatGACTACATTCAAACTAAAAACACCT
TAGTTCCACTGCTCATAAGGCAATCTTGAGGTTATTTTGTTTGAGTCTAG
TATGACAAGTTTTCGTTGATAGAAATAAGACATCAACACATTACAGTATC
AGCCAGTTTCGCCTCTTTTGCCAAAGACACTCCTAGATAATCTAGAGTTT
TTTATTGATCTTGATTTGTCTCCCTGTAACCTGAGATccgattgtggttg
ttttctgcccaccacgctgaagctctaaagggatgggtgaaaacatacaa
tctgacgaatatgctatctcaaaatcgtaaggaccggtttgtctaaaagg
actggggatgacaacaaagttgcgtgattgtgtttacaAATAGGgagccg
tatcagtttttgactttctggcgcacaacaagattctTGTTGTAAAATTT
CCCGCGGGAGGACTATTTTCCTCAGATGTATAATTTTCAAGTGCCTTCAG
AGGTTTACCGTGCATGTAAGAAAATTATGAACAGCTGTTATCAGGTTATC
TCCCTGTTGCTTGCAAACCAACacccttcaaaaaagcagtgGCTAGCTCA
ATGATTTCTTTTGGTTAACAACACAAACTGGCTTGCATGATCATTTACAG
AACAAGATTATGTTGGttattttttcctcattttttttgtaatcacAGTA
gttagagtctctttaactcaaacTTCTATAACTGGAACAAGTTTCGTTCC
GTTTTTGCGTGGTCTTCTCATACTGCAAAGGAGAAATTCCCTGGATCGTT
TTTAGACTGTTGTAATTACATTTTTGAGCTTAAATCAAACTAGCCTGGAA
ATCCAAGCGTTACACTTTTtccacagtctagtttatgatatgtttgctgc
ttgtttaacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065809-exon-scaffold_445-1491911889:188312..188777 | TCONS_00065809-exon-scaffold_445-1491911889:188312..188777 | Clytia hemisphaerica | exon |
| TCONS_00065809-exon-scaffold_445-1510915933:188312..188777 | TCONS_00065809-exon-scaffold_445-1510915933:188312..188777 | Clytia hemisphaerica | exon |
| TCONS_00065809-exon-scaffold_445-1575043694:188312..188777 | TCONS_00065809-exon-scaffold_445-1575043694:188312..188777 | Clytia hemisphaerica | exon |
| TCONS_00065809-exon-scaffold_445-1491911889:188903..188975 | TCONS_00065809-exon-scaffold_445-1491911889:188903..188975 | Clytia hemisphaerica | exon |
| TCONS_00065809-exon-scaffold_445-1510915933:188903..188975 | TCONS_00065809-exon-scaffold_445-1510915933:188903..188975 | Clytia hemisphaerica | exon |
| TCONS_00065809-exon-scaffold_445-1575043694:188903..188975 | TCONS_00065809-exon-scaffold_445-1575043694:188903..188975 | Clytia hemisphaerica | exon |
| TCONS_00065809-exon-scaffold_445-1491911889:189107..190521 | TCONS_00065809-exon-scaffold_445-1491911889:189107..190521 | Clytia hemisphaerica | exon |
| TCONS_00065809-exon-scaffold_445-1510915933:189107..190521 | TCONS_00065809-exon-scaffold_445-1510915933:189107..190521 | Clytia hemisphaerica | exon |
| TCONS_00065809-exon-scaffold_445-1575043694:189107..190521 | TCONS_00065809-exon-scaffold_445-1575043694:189107..190521 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_445 | supercontig | scaffold_445:188312..190521 + |
Blast
The following BLAST results are available for this feature:
|
