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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065808 ID=TCONS_00065808|Name=TCONS_00065808|organism=Clytia hemisphaerica|type=transcript|length=393bp
AATaatcatttaaaaattatgGAAAGATTGACTGAACGATCTAAGCACCT
ACCTTGTTTAATCTCATACAATTGGTTGCTCTGATTAACACCTGCACATA
TCTGTGCTTTGCAAGAGCTCTTTGACAAATTACAGaatttgtattcatca
ttgACGCAGCTTTAGCACACCGACAAAGTAATTCTTGAAGATATCCATAT
TGCCAATTGTCCCAGCTAATCTCAGTACCTGACCATCCTATGTCCGTTCG
ATCGCGGTCATTGAAAATGTATTTGGTCATTCGTGGATTCTTTCTTGAAT
CAAAATCATTCCAACATCCAAGATTTTTGTAGAATGGACACATCATTGCT
GGTAAGAAGGAAAACACTGTTACCACCATAAGTCAAAATACAA Run BLAST on NCBI transcript from alignment at scaffold_445:160679..162720+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065808 ID=TCONS_00065808|Name=TCONS_00065808|organism=Clytia hemisphaerica|type=transcript|length=2042bp|location=Sequence derived from alignment at scaffold_445:160679..162720+ (Clytia hemisphaerica)
AATaatcatttaaaaattatgGAAAGATTGACTGAACGATCTAAGCACCT
ACCTTGTTTAATCTCATACAATTGGTTGCTCTGATTAACACCTGCACATA
TCTGTGCTTTGCAAGAGCTCTTTGACAAATTACAGaatttgtattcatca
ttgACGCAGGTATGTGCTTCCCCATCTGCTTTCGCTTTTGGTTCGTCATT
GGTGATCCAACATTCAGCTGAAAGAAGAATATTAATTGGTGTTGATTTCT
TTAGATTGTCTGCCTTAGAAAGTAAGATTGGTTGCaggaccgtagtgcag
tggtagagcatccggctgtGCAAGGTCGTGGACTCAATCCTCGACCGCGT
CTTACCTGTACTTTGTACTTAGTATAAAACGCTAAAAATGGTGCTtgatt
cttcttttttgatgctcagtaactaagagaaggatcaagaaTGCTCACCG
TTCACGAAAGGTTTGTATCACGTCTATCAGTACAATCAAAAACAGGTGCA
AGTGGTTCTGGGGGACAAGATTGTTATTATCAcccttcatgtttttattt
cacAACAGTAAGCCATGAACATCGAAAGGACTTGTCTATATAGCCTTACG
AAAGCAAGATagatatattcttttatttgaaattatcaatattttctCTT
CTAGAAGAatctaccttattacacgaaaataagtagacatgtaattatcg
gcgatccaaaaaatatccgcaatctgattggttaaaaagagtacaatata
tcttgtattttacatgtaaaaatataaattgacgaaaagatgttgttgcg
ttgtagcggtagcagcaatctaacgttaCTTTGCTACACAattgccctgc
gcttttttccgacacaaaaagtgcattttttgggtcaccgataaggctcg
gaaaatattgtacggaaaaatctcggaactcgtaaaatatttctcatatt
gtactcgcaactgtccgataactattacttaacACGAATTAAGAAATTAC
TTGTTAATTAAAACCcctttaattaaaaccagccgtggtgtccttgaaaa
agcaaatcaaattcgtgttaattttttgcgtgtgaatttcaaggccgttg
aatacttgccttgtaatattcgtgtaataatgTATATTCAGCTTTTGGAT
GTATATTTAAATTCTGTCTCTGTTTCCAAATTAGTGTGCTAAAGAGTGTA
GCAGTGTGAGTTAAGAAGATCATGGACAGTAGACACAAGTTACACATCAA
TTTTTTAAGTTATTCGTTTTAAAAATCATATACTCACCATAATATTGGAT
CGAGAAATATTTCATTCCGTTTTCTTTTGCAGCTTTAGCACACCGACAAA
GTAATTCTTGAAGATATCCATATTGCCAATTGTCCCAGCTAATCTCAGTA
CCTGACCATCCTATGTCCGTTCGATCGCGGTCATTGAAAATGTATTTGGT
CATTCGTGGATTCTTTCTTGAATCAAAATCATTCCAACATCCAAGATTTT
TGTAGAATGGACACATCATTGCTGGTAAGAAGGAAAAGTATGTTGCATAT
TATTACAAAGTCATTTTCTTGATTGAGAATTAAGCCTGGATTACACGGCG
TATTTATATCACCCACCACTGAATCAAAGTTCTGTTTCAGAGATTCTTCA
AGTTTTTCGTATGAGACAGTAGATtctccttaacttgaacaatCAAAGGG
AACACAGATTTGTTCGAGTttaagaaaatttagtttttcagTAAGGTtta
ttatgaattttttttcgagttGAGGAGACTTTCGAGTCAAAAGGTTCGAG
TTAAACAAACTCCATTGGAGTAATTTATAAGGCCGACAAACTGGGCGCAT
CCTAACCTGGCTTAATACTTAATTTTGCTGACATAATTTCTTTCAAGATT
CTACAAGCCATAGGTAAAATACTCGTCAATACCCaaatgaaatttgttta
ttggcTAAAAGGTTCACGTGAATTAAACAATCAACTTACATTTCTCGCAA
TTTTTCTTTGTAGCACTGTTACCACCATAAGTCAAAATACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065808-exon-scaffold_445-1491911889:160679..160837 | TCONS_00065808-exon-scaffold_445-1491911889:160679..160837 | Clytia hemisphaerica | exon |
| TCONS_00065808-exon-scaffold_445-1510915933:160679..160837 | TCONS_00065808-exon-scaffold_445-1510915933:160679..160837 | Clytia hemisphaerica | exon |
| TCONS_00065808-exon-scaffold_445-1575043694:160679..160837 | TCONS_00065808-exon-scaffold_445-1575043694:160679..160837 | Clytia hemisphaerica | exon |
| TCONS_00065808-exon-scaffold_445-1491911889:162011..162215 | TCONS_00065808-exon-scaffold_445-1491911889:162011..162215 | Clytia hemisphaerica | exon |
| TCONS_00065808-exon-scaffold_445-1510915933:162011..162215 | TCONS_00065808-exon-scaffold_445-1510915933:162011..162215 | Clytia hemisphaerica | exon |
| TCONS_00065808-exon-scaffold_445-1575043694:162011..162215 | TCONS_00065808-exon-scaffold_445-1575043694:162011..162215 | Clytia hemisphaerica | exon |
| TCONS_00065808-exon-scaffold_445-1491911889:162692..162720 | TCONS_00065808-exon-scaffold_445-1491911889:162692..162720 | Clytia hemisphaerica | exon |
| TCONS_00065808-exon-scaffold_445-1510915933:162692..162720 | TCONS_00065808-exon-scaffold_445-1510915933:162692..162720 | Clytia hemisphaerica | exon |
| TCONS_00065808-exon-scaffold_445-1575043694:162692..162720 | TCONS_00065808-exon-scaffold_445-1575043694:162692..162720 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_445 | supercontig | scaffold_445:160679..162720 + |
Blast
The following BLAST results are available for this feature:
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