TCONS_00065802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065802
Unique NameTCONS_00065802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065802 ID=TCONS_00065802|Name=TCONS_00065802|organism=Clytia hemisphaerica|type=transcript|length=645bp
CCTAAATaatcatttaaaaattatgGAAAGATTGACTGAACGATCTAAGC
ACCTACCTTGTTTAATCTCATACAATTGGTTGCTCTGATTAACACCTGCA
CATATCTGTGCTTTGCAAGAGCTCTTTGACAAATTACAGaatttgtattc
atcattgACGCAGCACACCGACAAAGTAATTCTTGAAGATATCCATATTG
CCAATTGTCCCAGCTAATCTCAGTACCTGACCATCCTATGTCCGTTCGAT
CGCGGTCATTGAAAATGTATTTGGTCATTCGTGGATTCTTTCTTGAATCA
AAATCATTCCAACATCCAAGATTTTTGTAGAATGGACACATCATTGCTGA
TCCTGAACATCCACGGTAGAATTCACCATCCATGATAATCTGTTTTCCTG
CTTGTCCTTGGAAAGTCAAACCGTCTTGGTTTGTTATGGTCATTTCAGAA
CCACCAATGTCATATTTTCCTTGCATCTCTGGACATGTTCCTGGTTTATA
CAATGaCAAACATGGTTCCACTTTGTCCAGTATGAACTTGACATTGGTTA
TTTTGTTTCTTCAGATACGCAAAAAGACCTTACCTAACTCTTGGATCTTG
TACCCGCTGACTTTTGTATCAATAGCATCAACCAGGGTTCCCAAA
Run BLAST on NCBI

transcript from alignment at scaffold_445:160675..166603+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065802 ID=TCONS_00065802|Name=TCONS_00065802|organism=Clytia hemisphaerica|type=transcript|length=5929bp|location=Sequence derived from alignment at scaffold_445:160675..166603+ (Clytia hemisphaerica)
CCTAAATaatcatttaaaaattatgGAAAGATTGACTGAACGATCTAAGC
ACCTACCTTGTTTAATCTCATACAATTGGTTGCTCTGATTAACACCTGCA
CATATCTGTGCTTTGCAAGAGCTCTTTGACAAATTACAGaatttgtattc
atcattgACGCAGGTATGTGCTTCCCCATCTGCTTTCGCTTTTGGTTCGT
CATTGGTGATCCAACATTCAGCTGAAAGAAGAATATTAATTGGTGTTGAT
TTCTTTAGATTGTCTGCCTTAGAAAGTAAGATTGGTTGCaggaccgtagt
gcagtggtagagcatccggctgtGCAAGGTCGTGGACTCAATCCTCGACC
GCGTCTTACCTGTACTTTGTACTTAGTATAAAACGCTAAAAATGGTGCTt
gattcttcttttttgatgctcagtaactaagagaaggatcaagaaTGCTC
ACCGTTCACGAAAGGTTTGTATCACGTCTATCAGTACAATCAAAAACAGG
TGCAAGTGGTTCTGGGGGACAAGATTGTTATTATCAcccttcatgttttt
atttcacAACAGTAAGCCATGAACATCGAAAGGACTTGTCTATATAGCCT
TACGAAAGCAAGATagatatattcttttatttgaaattatcaatattttc
tCTTCTAGAAGAatctaccttattacacgaaaataagtagacatgtaatt
atcggcgatccaaaaaatatccgcaatctgattggttaaaaagagtacaa
tatatcttgtattttacatgtaaaaatataaattgacgaaaagatgttgt
tgcgttgtagcggtagcagcaatctaacgttaCTTTGCTACACAattgcc
ctgcgcttttttccgacacaaaaagtgcattttttgggtcaccgataagg
ctcggaaaatattgtacggaaaaatctcggaactcgtaaaatatttctca
tattgtactcgcaactgtccgataactattacttaacACGAATTAAGAAA
TTACTTGTTAATTAAAACCcctttaattaaaaccagccgtggtgtccttg
aaaaagcaaatcaaattcgtgttaattttttgcgtgtgaatttcaaggcc
gttgaatacttgccttgtaatattcgtgtaataatgTATATTCAGCTTTT
GGATGTATATTTAAATTCTGTCTCTGTTTCCAAATTAGTGTGCTAAAGAG
TGTAGCAGTGTGAGTTAAGAAGATCATGGACAGTAGACACAAGTTACACA
TCAATTTTTTAAGTTATTCGTTTTAAAAATCATATACTCACCATAATATT
GGATCGAGAAATATTTCATTCCGTTTTCTTTTGCAGCTTTAGCACACCGA
CAAAGTAATTCTTGAAGATATCCATATTGCCAATTGTCCCAGCTAATCTC
AGTACCTGACCATCCTATGTCCGTTCGATCGCGGTCATTGAAAATGTATT
TGGTCATTCGTGGATTCTTTCTTGAATCAAAATCATTCCAACATCCAAGA
TTTTTGTAGAATGGACACATCATTGCTGGTAAGAAGGAAAAGTATGTTGC
ATATTATTACAAAGTCATTTTCTTGATTGAGAATTAAGCCTGGATTACAC
GGCGTATTTATATCACCCACCACTGAATCAAAGTTCTGTTTCAGAGATTC
TTCAAGTTTTTCGTATGAGACAGTAGATtctccttaacttgaacaatCAA
AGGGAACACAGATTTGTTCGAGTttaagaaaatttagtttttcagTAAGG
TttattatgaattttttttcgagttGAGGAGACTTTCGAGTCAAAAGGTT
CGAGTTAAACAAACTCCATTGGAGTAATTTATAAGGCCGACAAACTGGGC
GCATCCTAACCTGGCTTAATACTTAATTTTGCTGACATAATTTCTTTCAA
GATTCTACAAGCCATAGGTAAAATACTCGTCAATACCCaaatgaaatttg
tttattggcTAAAAGGTTCACGTGAATTAAACAATCAACTTACATTTCTC
GCAATTTTTCTTTGTAGCACTGTTACCACCATAAGTCAAAATACAAGTTT
CTGGTGCATAATGAAATGACATTGATTGTCCATTGTATTTGACAGATCCT
GAACATCCACGGTAGAATTCACCATCCATGATAATCTGTTTTCCTGCTTG
TCCTTGGAAAGTCAAACCGTCTTGGTTTGTTATGGTCATTTCAGAACCAC
CAATGTCATATTTTCCTTGCATCTCTGGACATGTTCCTGGTTTATACAAT
GGTTAGTATGATCATAATTATTTCTTGATTTTATTGTTCTGTAGATAAGT
GAAAATGGGATTGTTTCGTCggaatatttttcttgtaaatgAATAAACGA
TTCGCCTTTTGCTAAATCATGATCATTTTGTTAGGCAGTAGTTTGGTTGC
AGCAACTCCAACACCCCGTCCCCCAGAAGACGGAAGACAAAGGGCAAAAA
AGACTTGAAAATGCTCTgcttttttaaataatgaaaaagatattCTGCGT
TGATTTTATAAGATAAAATAAAAGCCCCATAATTTAATACAAACCTTTAA
ATACTCACTgtaatgtttttgtattttgtagaCAAACATGGTTCCACTTT
GTCCAGTATGAACTTGACATTGGTTATTTTGTTTCTTCAGATACGGTGAG
TAGCTACCAGATACACAACTTTGCGTTTCGTCGTGCATTTTAAAGTCAGG
ATTCTCTTTCAGGTAATCACCCCAACATTCAGCTATTAAGAGATTTGAAA
TTGATACTTTAAGTCTTACAGTGACCGCAGCAGAAAGGGTAGCGAGTACC
TCACTAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaatgtataac
atgccatagttttgttggttacatcagtcagaaaacacattttaaacacg
gcaattatgaaaaattcactatggtcagagcccttaaacaaAGAAAGGGA
AGGAACAAGTTAAATTGAAAAATCCAAGGAAAAGGGGTCGCCTTCCCCTA
TCTTCAGGTAGAAGCTTTACAAAAAGGGAGCCTTCAGGTCATATATACGA
AGAAATACTAACCGTAATATTGAATTCCGATGACTGCTGAATTCgcgttc
ttttttttcaagattttcttcCCGCatctgaaaaagtcaaaaatagaTGA
ACTCATCATAGACCAATGATTTCTGGATTCTAACACTGTATGGAACACCT
TGGCTTTTCAGAACTTGTTTGTCAAAAGGTTTCAAGTTACTTTGGTGAAT
TCCGTTAGTGAGACAGATTTTTAACTCGACGTAAATTCGCATTGTACAAA
AAGTCGTAAAAGTGGATATGaattaaattaataaaaatgtCGGAGTTCTA
TTTAGtctgggtttttttttcgtcggggagaaatttcgtcacctagagga
attttcgtcactttcccccgacatttatTTCCTCGATAAGGCAGAATTTT
GATCCACTCAgccgaaaactttttacaaagatAAGAAAGGGCGTTCTGAA
ATCCCAAAATGTTCACTTACTCGCAAATAAAGTTGGATAAGAAAGCATTG
TATTTTCCCCAGTTGATGATTGGGTTGAAAGCTGCATTGGATGTCGGATC
ACGGCTATTCATGATCTGTGAAAGAAtgagtttatttttcattaaagGTA
AGATTCTATTACGGAGAATTAGGAAAGTTAGTGTCTTGACGATTTACCAC
AGAGAGGAATTAAAAAATGCCTGAAAATGTTGACACATGtaaactctcgc
taattcgaactcgaattATATATAGAaggtttgaattatagaaagtattt
tgtgAGGGTTTCCACTTGACGGGAACTGGTACTTAGTTCGaatttataga
aagattcgaataatagaataaTAGAAATTCGCAGGGCCCAcgcccccccc
cacttttttgcaaggTAAAAATTTTTGGTTGCGCCACCTTAGACTCTTTA
TTCATTACCCCCCCCCtcccattttcaatttcatggaGTGGGCCCTGATT
CTAATCAGTAAGAGCATCAAGACGAAGTTTATCGAAAGCTCCCAGGGGGG
TACTTAGACAAAATGGTTGCAGAGAATGTGCAAGCCATATAAGGGTTCCT
TTTTCCGCCCTCGAAAGTCATTTAAGgcggtacaaaaaccattaaaaagc
aaatagAGTCTCCGTTAGGGTCCAAAATTCACGATAATCGAAATTTCCTT
TCTCAAAGGGTCATGATTTTCAAAGATTTGGACAAAAATCGaatgaaaat
cgacaaaaaaatgaaaatagtcTCTTTAATGGGCccaaaaaaacgtcaat
ttttctctttttaagggtcgattttcgatttttggctccgACATATCCAT
TACCTAGTAAACATATTACCCTCCCCCGGGGTTCAAAGCTTATAGCGAAT
ATAAAAGAATAAAGGAGAATTCAATTTGTTCATACCTGATCAGGAAAAGC
TCTGTTTTTTCGTTCATCTTTCCAACATCCAAGTGCTTCAACTTGTAAAG
GGCATTGTACTAAAAGGAAACAGTTGAATCTTGTTTAAATTTTATGCTCA
TTGTAAAGCCTAAATGTGACATAGTGGTGAGCTGTTAATTCAGTCAATCT
CTGTGGGAAGGGTTAGCTGGACAAGTTTGGATGATGGTTACCTAAGCTTC
TAAGAACGCAAAAGTTAGATAATACTGGATAATATCCAAAGACATTATga
tatttcgaatttttcctCATACAAATTCAAGCGAATTTTGCTTTGCTAGA
TATTCGCTGTTTTTTCGACGTAAAATGTCCTTAAGATGTTTACTTTTTTC
ACCTGACAGTTTCTAAGGCTTTGTTCTTCAGGTTTTTCCAAACTcgagcc
tcatgttcttatatcgtacaacttttaccaaaaaaagtcTATTAGCATTT
GCTTCTACATTATGTTCATTTATCTCACGCCAGctcaattttcatcattt
aAGCAAAAAGACCTTACCTAACTCTTGGATCTTGTACCCGCTGACTTTTG
TATCAATAGCATCAACCAGGGTTCCCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041228XLOC_041228Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065802-exon-scaffold_445-1491911889:160675..160837TCONS_00065802-exon-scaffold_445-1491911889:160675..160837Clytia hemisphaericaexon
TCONS_00065802-exon-scaffold_445-1510915933:160675..160837TCONS_00065802-exon-scaffold_445-1510915933:160675..160837Clytia hemisphaericaexon
TCONS_00065802-exon-scaffold_445-1575043694:160675..160837TCONS_00065802-exon-scaffold_445-1575043694:160675..160837Clytia hemisphaericaexon
TCONS_00065802-exon-scaffold_445-1491911889:162017..162202TCONS_00065802-exon-scaffold_445-1491911889:162017..162202Clytia hemisphaericaexon
TCONS_00065802-exon-scaffold_445-1510915933:162017..162202TCONS_00065802-exon-scaffold_445-1510915933:162017..162202Clytia hemisphaericaexon
TCONS_00065802-exon-scaffold_445-1575043694:162017..162202TCONS_00065802-exon-scaffold_445-1575043694:162017..162202Clytia hemisphaericaexon
TCONS_00065802-exon-scaffold_445-1491911889:162770..162925TCONS_00065802-exon-scaffold_445-1491911889:162770..162925Clytia hemisphaericaexon
TCONS_00065802-exon-scaffold_445-1510915933:162770..162925TCONS_00065802-exon-scaffold_445-1510915933:162770..162925Clytia hemisphaericaexon
TCONS_00065802-exon-scaffold_445-1575043694:162770..162925TCONS_00065802-exon-scaffold_445-1575043694:162770..162925Clytia hemisphaericaexon
TCONS_00065802-exon-scaffold_445-1491911889:163256..163319TCONS_00065802-exon-scaffold_445-1491911889:163256..163319Clytia hemisphaericaexon
TCONS_00065802-exon-scaffold_445-1510915933:163256..163319TCONS_00065802-exon-scaffold_445-1510915933:163256..163319Clytia hemisphaericaexon
TCONS_00065802-exon-scaffold_445-1575043694:163256..163319TCONS_00065802-exon-scaffold_445-1575043694:163256..163319Clytia hemisphaericaexon
TCONS_00065802-exon-scaffold_445-1491911889:166528..166603TCONS_00065802-exon-scaffold_445-1491911889:166528..166603Clytia hemisphaericaexon
TCONS_00065802-exon-scaffold_445-1510915933:166528..166603TCONS_00065802-exon-scaffold_445-1510915933:166528..166603Clytia hemisphaericaexon
TCONS_00065802-exon-scaffold_445-1575043694:166528..166603TCONS_00065802-exon-scaffold_445-1575043694:166528..166603Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_445supercontigscaffold_445:160675..166603 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.99601	2.34169	0.414265	0.20498	0	0	0.163903	0.410306	1.36526	1.39308	0.662196	5.39013	0.290139	0.183306	0.568259	1.11088	0.921114	1.4803	0	0	0.445558	0	1.98864	3.53697	0.223329	0.381385	0.00785875	0	1.33311	0.908873
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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