|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065799 ID=TCONS_00065799|Name=TCONS_00065799|organism=Clytia hemisphaerica|type=transcript|length=765bp
CCAGTCTTGGTGTGGAGCCAGTGGACAGCGACATCATGAAACGCAAGCCG
AGAAGTGTCCGCAGCCCCATGATCAACACATACCTCATACTacaagtgct
gacgtcagcaactCTCATCGTCCTCGGAACGCTGTTTATTTTCTGGAGAG
AGatggcggataaTATAGTGACACCACGTGACACCACAATGACTTTCACG
TGTTTTGTTTTCTTCGATATGTTCAACGCCATGAGTTGCAGGTCTCAGAC
AAAATCAATATTTCAAATCGGGTTTTTCACCAACAAGATGTTTCTGTACG
CTGTTTTTGGTTCATTAATTGGTCAAAGTCTGGTCGTGTATTGTCCACCA
TTGCAAGCTATATTCCAAACTGAAGCATTGAGTTTCTTCGATATTTGCAC
TTTGATAGCATTGGCGTCATCTGTCTTGGTCTTGGATGAAGTACGGAAAT
TTTTCCGACGCCGTTATCAACGATTGGAAATTCGTAATAGGAAATATGAG
CTTGATATAGTATAGTGTTTACTTCATTTTAGACCAGTTTGAACGTTGTA
GTATATTGTAAAtgttcttttgaatttttaaaaaaagtttttgtactAAA
ATTATGAGATTTTTGTGACCAACCGCGCAAAACTTTATTTAAAGAGACAC
GACTTCATAACTGCTGGAATTCTCatccaaattcaaattttaaaaactct
GTTTACGCTGTATTTGATCTCACCACAAATTCTGATGGTGTGTTGGTTTA
GGTTTTTGACGTAAG Run BLAST on NCBI protein sequence of TCONS_00065799-protein >TCONS_00065799-protein ID=TCONS_00065799-protein|Name=TCONS_00065799-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
SLGVEPVDSDIMKRKPRSVRSPMINTYLILQVLTSATLIVLGTLFIFWRE
MADNIVTPRDTTMTFTCFVFFDMFNAMSCRSQTKSIFQIGFFTNKMFLYA
VFGSLIGQSLVVYCPPLQAIFQTEALSFFDICTLIALASSVLVLDEVRKF
FRRRYQRLEIRNRKYELDIV Run BLAST on NCBI transcript from alignment at scaffold_445:144745..147126+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065799 ID=TCONS_00065799|Name=TCONS_00065799|organism=Clytia hemisphaerica|type=transcript|length=2382bp|location=Sequence derived from alignment at scaffold_445:144745..147126+ (Clytia hemisphaerica)
CCAGTCTTGGTGTGGAGCCAGTGGACAGCGACATCATGAAACGCAAGCCG
AGAAGTGTCCGCAGCCCCATGATCAACACATACCTCATACTacaagtgct
gacgtcagcaactCTCATCGTCCTCGGAACGCTGTTTATTTTCTGGAGAG
AGGTATACCAAATGTTGTCAAAATAAGGTTGTAACACCAGGGGgttgctt
tgtttttgataggctggcaaatgaaaaattgactCTAGCGAattctagat
tctaggccggcgaattcttagcaagccTGTATTGATTATACTTGAGGCGG
TGAACCGGATTTTTAGACCGGCGAATTCTGGCGAATTGTGAATTCTATCC
TATCTTGGACTGGCGAAATTCGCCGTTCACCGGGCCTAAATAAGACCCCC
CACGTGGATAGTACTTTCATTGTTAATACTTTCCACTTTATTCTATAATA
CTCTATTTACAAATTGTAATTCAAACCTCTTCTGTAATCTATATCTTTCT
GATTGCAATTCATTTACGCACAATGCTTAAATTGAAGCATTTAGCCTACT
TACTTGCTTAAGGTCGTATTGACGATTTTTCACTAATTCCTTTAAAATGT
ATGCGATAGTAGAATAACTAATGAGTTACATAAAACAGAACAATGACTCA
TACATAGAAGGCGGTCAGCCATTGAcaattgaaatcaaaaaatgatGCTA
TCAAACAGGCAATTTCTTTTTCGTTAGCAATTTATGCAATTATTACGATA
AGTTAGCTTACCATAATCCCTATTTTAATGCAATGATAAACTATTTgctt
tcaagatggcggataaTATAGTGACACCACGTGACACCACAATGACTTTC
ACGTGTTTTGTTTTCTTCGATATGTTCAACGCCATGAGTTGCAGGTCTCA
GGTATGAATTTTTCTCAATCTTATATGTTTGTTATTACTTAAGTATTTAG
AGTATTGCTCGTGTTGATATTTTCACAGGCTTTTTTCAttatcacacccc
tgtctcacagacccggtggaccccctgccccggtggaaaaataggccaaa
aaatcgtctccggtggaaaaaataccctacattttTAACCCCACTAGGAA
ATTGCCCTatgattctatccccattgaaaattgaatggaaaaaattggac
tccaaaaccatccccactggaatttttgagctggaaacaatagattttct
atccccattgggatttcgatagacatttttatccccactgagggaaaagg
ttccaccggggcactgagacaggggtgtattatctAAAGCAAAACATAGC
TTTTATTTGACAAACCAGCCTTCAGAAACAAATTTAAATCAAATCGAACG
ACCCAATTGGTCAATATGTGGTTTTACCAAAatttacattctggtctgta
aaataccaattaGACAGGTGGTCGAACCAAAATTTTACACATCATTTCCA
ATTATCCATAtccaaaattgaaagttcatagcTCAATGATTCCTTCCATG
GTCCCTATAGTAAGACCACCGAATATTTTTAAGACAAAACATTCTGAAGG
AGATggcaatttaaaatttctcacgttgaaattctattgttttcaagcag
aaaCTAAAAATTACAAACCTTAATATCTTGAATATCTGAAGCAAGTAGCC
AGTAAAACTTAtttatctggttatccctttaaaagAATGACTCACAGTAA
TTCCTGTTTTGCTAAATTACAAAATTAGAAACCCTATGTAGATGTACTTA
GGTGTAAAAGTACTTGGGTGTGCTTGTTTTGAATAGTTTAATCTGGTGAT
ACGATGGCTTTAAAGTGTTCACAGACCTTTAAAGAATGGATCTTTCTTCA
ATTCATTCCTTTCAGACAAAATCAATATTTCAAATCGGGTTTTTCACCAA
CAAGATGTTTCTGTACGCTGTTTTTGGTTCATTAATTGGTCAAAGTCTGG
TCGTGTATTGTCCACCATTGCAAGCTATATTCCAAACTGAAGCATTGAGT
TTCTTCGATATTTGCACTTTGATAGCATTGGCGTCATCTGTCTTGGTCTT
GGATGAAGTACGGAAATTTTTCCGACGCCGTTATCAACGATTGGAAATTC
GTAATAGGAAATATGAGCTTGATATAGTATAGTGTTTACTTCATTTTAGA
CCAGTTTGAACGTTGTAGTATATTGTAAAtgttcttttgaatttttaaaa
aaagtttttgtactAAAATTATGAGATTTTTGTGACCAACCGCGCAAAAC
TTTATTTAAAGAGACACGACTTCATAACTGCTGGAATTCTCatccaaatt
caaattttaaaaactctGTTTACGCTGTATTTGATCTCACCACAAATTCT
GATGGTGTGTTGGTTTAGGTTTTTGACGTAAG Coding sequence (CDS) from alignment at scaffold_445:144745..147126+ >TCONS_00065799 ID=TCONS_00065799|Name=TCONS_00065799|organism=Clytia hemisphaerica|type=CDS|length=1539bp|location=Sequence derived from alignment at scaffold_445:144745..147126+ (Clytia hemisphaerica)
AGTCTTGGTGTGGAGCCAGTGGACAGCGACATCATGAAACGCAAGCCGAG
AAGTGTCCGCAGCCCCATGATCAACACATACCTCATACTacaagtgctga
cgtcagcaactCTCATCGTCCTCGGAACGCTGTTTATTTTCTGGAGAGAG
atggcggataaTATAGTGACACCACGTGACACCACAATGACTTTCACGTG
TTTTGTTTTCTTCGATATGTTCAACGCCATGAGTTGCAGGTCTCAGACAA
AATCAATATTTCAAATCGGGTTTTTCACCAACAAGATGTTTCTGTACGCT
GTTTTTGGTTCATTAATTGGTCAAAGTCTGGTCGTGTATTGTCCACCATT
GCAAGCTATATTCCAAACTGAAGCATTGAGTTTCTTCGATATTTGCACTT
TGATAGCATTGGCGTCATCTGTCTTGGTCTTGGATGAAGTACGGAAATTT
TTCCGACGCCGTTATCAACGATTGGAAATTCGTAATAGGAAATATGAGCT
TGATATAGTATAGAGTCTTGGTGTGGAGCCAGTGGACAGCGACATCATGA
AACGCAAGCCGAGAAGTGTCCGCAGCCCCATGATCAACACATACCTCATA
CTacaagtgctgacgtcagcaactCTCATCGTCCTCGGAACGCTGTTTAT
TTTCTGGAGAGAGatggcggataaTATAGTGACACCACGTGACACCACAA
TGACTTTCACGTGTTTTGTTTTCTTCGATATGTTCAACGCCATGAGTTGC
AGGTCTCAGACAAAATCAATATTTCAAATCGGGTTTTTCACCAACAAGAT
GTTTCTGTACGCTGTTTTTGGTTCATTAATTGGTCAAAGTCTGGTCGTGT
ATTGTCCACCATTGCAAGCTATATTCCAAACTGAAGCATTGAGTTTCTTC
GATATTTGCACTTTGATAGCATTGGCGTCATCTGTCTTGGTCTTGGATGA
AGTACGGAAATTTTTCCGACGCCGTTATCAACGATTGGAAATTCGTAATA
GGAAATATGAGCTTGATATAGTATAGAGTCTTGGTGTGGAGCCAGTGGAC
AGCGACATCATGAAACGCAAGCCGAGAAGTGTCCGCAGCCCCATGATCAA
CACATACCTCATACTacaagtgctgacgtcagcaactCTCATCGTCCTCG
GAACGCTGTTTATTTTCTGGAGAGAGatggcggataaTATAGTGACACCA
CGTGACACCACAATGACTTTCACGTGTTTTGTTTTCTTCGATATGTTCAA
CGCCATGAGTTGCAGGTCTCAGACAAAATCAATATTTCAAATCGGGTTTT
TCACCAACAAGATGTTTCTGTACGCTGTTTTTGGTTCATTAATTGGTCAA
AGTCTGGTCGTGTATTGTCCACCATTGCAAGCTATATTCCAAACTGAAGC
ATTGAGTTTCTTCGATATTTGCACTTTGATAGCATTGGCGTCATCTGTCT
TGGTCTTGGATGAAGTACGGAAATTTTTCCGACGCCGTTATCAACGATTG
GAAATTCGTAATAGGAAATATGAGCTTGATATAGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065799-exon-scaffold_445-1491911889:144745..144896 | TCONS_00065799-exon-scaffold_445-1491911889:144745..144896 | Clytia hemisphaerica | exon |
| TCONS_00065799-exon-scaffold_445-1510915933:144745..144896 | TCONS_00065799-exon-scaffold_445-1510915933:144745..144896 | Clytia hemisphaerica | exon |
| TCONS_00065799-exon-scaffold_445-1575043694:144745..144896 | TCONS_00065799-exon-scaffold_445-1575043694:144745..144896 | Clytia hemisphaerica | exon |
| TCONS_00065799-exon-scaffold_445-1491911889:145550..145645 | TCONS_00065799-exon-scaffold_445-1491911889:145550..145645 | Clytia hemisphaerica | exon |
| TCONS_00065799-exon-scaffold_445-1510915933:145550..145645 | TCONS_00065799-exon-scaffold_445-1510915933:145550..145645 | Clytia hemisphaerica | exon |
| TCONS_00065799-exon-scaffold_445-1575043694:145550..145645 | TCONS_00065799-exon-scaffold_445-1575043694:145550..145645 | Clytia hemisphaerica | exon |
| TCONS_00065799-exon-scaffold_445-1491911889:146610..147126 | TCONS_00065799-exon-scaffold_445-1491911889:146610..147126 | Clytia hemisphaerica | exon |
| TCONS_00065799-exon-scaffold_445-1510915933:146610..147126 | TCONS_00065799-exon-scaffold_445-1510915933:146610..147126 | Clytia hemisphaerica | exon |
| TCONS_00065799-exon-scaffold_445-1575043694:146610..147126 | TCONS_00065799-exon-scaffold_445-1575043694:146610..147126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_445 | supercontig | scaffold_445:144745..147126 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006068 | ATPase_P-typ_cation-transptr_C |
| IPR023298 | ATPase_P-typ_TM_dom |
Blast
BLAST of TCONS_00065799 vs. Swiss-Prot (Human)
Match: AT2C1 (Calcium-transporting ATPase type 2C member 1 OS=Homo sapiens GN=ATP2C1 PE=1 SV=3) HSP 1 Score: 190.66 bits (483), Expect = 7.366e-55 Identity = 90/159 (56.60%), Postives = 125/159 (78.62%), Query Frame = 3
Query: 3 SLGVEPVDSDIMKRKPRSVRSPMINTYLILQVLTSATLIVLGTLFIFWREMADNIVTPRDTTMTFTCFVFFDMFNAMSCRSQTKSIFQIGFFTNKMFLYAVFGSLIGQSLVVYCPPLQAIFQTEALSFFDICTLIALASSVLVLDEVRKFFRRRYQRLE 479
SLGVEPVD D++++ PR+ + ++ LIL++L S+ +IV GTLF+FWRE+ DN++TPRDTTMTFTCFVFFDMFNA+S RSQTKS+F+IG +N+MF YAV GS++GQ LV+Y PPLQ +FQTE+LS D+ L+ L SSV ++ E+ K R ++++
Sbjct: 748 SLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSSIIIVCGTLFVFWRELRDNVITPRDTTMTFTCFVFFDMFNALSSRSQTKSVFEIGLCSNRMFCYAVLGSIMGQLLVIYFPPLQKVFQTESLSILDLLFLLGLTSSVCIVAEIIKKVERSREKIQ 906
The following BLAST results are available for this feature:
|
