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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065791 ID=TCONS_00065791|Name=TCONS_00065791|organism=Clytia hemisphaerica|type=transcript|length=1045bp
ACCAGGTATCCATCAATTTGAACAAAACAAACGCATATCAAAATGATCTA
TTGGAAAGGATTGATACCTTCGCCACATATTCCGTTGAATGCAATATTCC
ACAAGGTGTGAATGTAACACATGAAAATGGAGTGAATATTACCAAAACAG
CAGATTTGGTTGAAGGTGTATCAAGTTCGACTGACGAATTCACTGTCTCG
ATAAATCTCCATAAATCatcaaatttcaatgaaagtctTACATATCCTGC
AGTTATTGATAGATTGGGACGTTTTAATTTGGAACTTGAAATTGACACTG
TTGCAAATTTGTATATTATTCCACGAGATTGTCATGGTACTTCTACATCT
GATCGAGATGACGTCATTCGGGAAGCTATTGTCACTGACGGATGTCCCAA
TACTGACCACGTTTTCAAGGAAGAGTCTACCGCTGACAATGGAAAGAAAT
TCCGATTTTCATTGAACGTATTCCGATTCAAAAACTCGAACGGTATGGTC
TACATTCATTGCTCTGCTCACGTCTGTTTGGAAGGAAGTAATACCACAGA
ATGTCAATTCGGTTGTGAACAAAACAGCAGACGACGAAGACGTTCAGTGG
AGGAGAATGCATTGACACTAAATGATGATCTTTCCAAAGATTATGACATT
CGAACTGGATTGATTATCGTAACAGAAAATTCTAAAAATGACGACTCATT
CCAACAAGACACCCAAGAATCACCCAACAATACTCAATTCTTTCAAACCA
CGACCAATATCATTCTCATTGCAATCATCTTGGTAATGTTGACTTTAGTA
TGTTCTCTCTTGGTTTTTGTTGGCTTACGTCGCCGTCGAAGTGGTTCAAA
AAGATATAGTGTCCCTGGATCTCCTTCGAAGATGGAAATGCATTAAATTG
AAGTGACAGTACTATGCCATGCagttaaattttcaataatttttcagttg
AAGTTGCTCTTCGCTTTGTATTAagctaaaaatatatataaaaatggatt
ttaaaaattgtaaattaaatcataaatatgaaaaagattttaaac Run BLAST on NCBI protein sequence of TCONS_00065791-protein >TCONS_00065791-protein ID=TCONS_00065791-protein|Name=TCONS_00065791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
QVSINLNKTNAYQNDLLERIDTFATYSVECNIPQGVNVTHENGVNITKTA
DLVEGVSSSTDEFTVSINLHKSSNFNESLTYPAVIDRLGRFNLELEIDTV
ANLYIIPRDCHGTSTSDRDDVIREAIVTDGCPNTDHVFKEESTADNGKKF
RFSLNVFRFKNSNGMVYIHCSAHVCLEGSNTTECQFGCEQNSRRRRRSVE
ENALTLNDDLSKDYDIRTGLIIVTENSKNDDSFQQDTQESPNNTQFFQTT
TNIILIAIILVMLTLVCSLLVFVGLRRRRSGSKRYSVPGSPSKMEMH Run BLAST on NCBI transcript from alignment at scaffold_445:18635..20634+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065791 ID=TCONS_00065791|Name=TCONS_00065791|organism=Clytia hemisphaerica|type=transcript|length=2000bp|location=Sequence derived from alignment at scaffold_445:18635..20634+ (Clytia hemisphaerica)
ACCAGGTATCCATCAATTTGAACAAAACAAACGCATATCAAAATGATCTA
TTGGAAAGGATTGATACCTTCGCCACATATTCCGTTGAATGCAATATTCC
ACAAGGTGTGAATGTAACACATGAAAATGGAGTGAATATTACCAAAACAG
CAGATTTGGTTGAAGGTGTATCAAGTAAGTTAAAGATATCAGCAATTAAA
AATTTCTATGAAACAACTTACATGGGACATAACGCAGCATGCCACATAAA
TCATATTAGTGGAGAAATCTTATAATTTTCTCATTTTACTGAGAACTTAA
GAACAAATTGAGATTAGTTTCAGACTCAAATCTCGGAAATAGCCAAAAGA
ATACTGAAGCAAGTAAGTTTAtagactaaaaatattttcgatatAAAGCC
CACTttggtttttgaaaattaagGTTGGTCGAANtagactaaaaatattt
tcgatatAAAGCCCCCTTTAGctttagtttttgaaaattaaggTTGGTCG
AATTTCTCCATAATTTTGTGTACAGGTTGATGCATTCTGAAAATGATGGT
ATTTTACTATATCTACTTTATCTTTCTAGGTTCGACTGACGAATTCACTG
TCTCGATAAATCTCCATAAATCatcaaatttcaatgaaagtctTACATAT
CCTGCAGTTATTGATAGATTGGGACGTTTTAATTTGGAACTTGAAATTGA
CACTGTTGCAAATTTGTATATTATTCCACGAGATTGTCATGGTACTTCTA
CATCTGATCGAGATGACGTCATTCGGGAAGCTATTGTCACTGACGGGTAA
TTCTTTTTGATTACATTTTCATTCTCAATCTTTAAATTCTGCTCTATTGA
ATAATGCAGGTTCCATATGATTTGACCATGATTGATAAAAAATCACTCGC
CGTATTGAACATTTCATCAAAACTTGTCATTTATACCCTAATAAGCGATA
GGGAGATATGTGGTGAAAAATTAGGTAGCTAGATTTCAGCATATGGCTTG
AATCTTTACCCGTAACattaatacaattttttgccatttcttactttcta
aataaacaaacttGACAATTTCAACACTGTTTTAGATGTCCCAATACTGA
CCACGTTTTCAAGGAAGAGTCTACCGCTGACAATGGAAAGAAATTCCGAT
TTTCATTGAACGTATTCCGATTCAAAAACTCGAACGGTATGGTCTACATT
CATTGCTCTGCTCACGTCTGTTTGGAAGGAAGTAATACCACAGAATGTCA
ATTCGGTTGTGAACAAAACAGCAGACGACGAAGACGTTCAGTGGAGGAGA
ATGCATTGACACTAAATGATGATCTTTCCAAAGATTATGACATTCGAACT
GGATTGATTATCGTAACAGAAAATTCTAAAAGTAAGTTCCTGAAAATTTA
TGCTAGAAGTACTTTGGATAAGCAATGCTAAGCTGtctctttttaacaat
ttccaTAAAACTTTAGAAAACAGATTGTATCTACTTATTATGATCGAGTT
GTGGAAATTATTACGGTATAAACATGAATGGTACAAAATTATAATAATTC
TAGGCtcaatataaaaacattttcattaggaaatttaaaataaaagagCT
ATCGTCAGTTACCACATTTCCAAATTTGTATTATCTTTCTAGATGACGAC
TCATTCCAACAAGACACCCAAGAATCACCCAACAATACTCAATTCTTTCA
AACCACGACCAATATCATTCTCATTGCAATCATCTTGGTAATGTTGACTT
TAGTATGTTCTCTCTTGGTTTTTGTTGGCTTACGTCGCCGTCGAAGTGGT
TCAAAAAGATATAGTGTCCCTGGATCTCCTTCGAAGATGGAAATGCATTA
AATTGAAGTGACAGTACTATGCCATGCagttaaattttcaataatttttc
agttgAAGTTGCTCTTCGCTTTGTATTAagctaaaaatatatataaaaat
ggattttaaaaattgtaaattaaatcataaatatgaaaaagattttaaac
Coding sequence (CDS) from alignment at scaffold_445:18635..20634+ >TCONS_00065791 ID=TCONS_00065791|Name=TCONS_00065791|organism=Clytia hemisphaerica|type=CDS|length=3576bp|location=Sequence derived from alignment at scaffold_445:18635..20634+ (Clytia hemisphaerica)
CAGGTATCCATCAATTTGAACAAAACAAACGCATATCAAAATGATCTATT
GGAAAGGATTGATACCTTCGCCACATATTCCGTTGAATGCAATATTCCAC
AAGGTGTGAATGTAACACATGAAAATGGAGTGAATATTACCAAAACAGCA
GATTTGGTTGAAGGTGTATCAAGTTCGACTGACGAATTCACTGTCTCGAT
AAATCTCCATAAATCatcaaatttcaatgaaagtctTACATATCCTGCAG
TTATTGATAGATTGGGACGTTTTAATTTGGAACTTGAAATTGACACTGTT
GCAAATTTGTATATTATTCCACGAGATTGTCATGGTACTTCTACATCTGA
TCGAGATGACGTCATTCGGGAAGCTATTGTCACTGACGGATGTCCCAATA
CTGACCACGTTTTCAAGGAAGAGTCTACCGCTGACAATGGAAAGAAATTC
CGATTTTCATTGAACGTATTCCGATTCAAAAACTCGAACGGTATGGTCTA
CATTCATTGCTCTGCTCACGTCTGTTTGGAAGGAAGTAATACCACAGAAT
GTCAATTCGGTTGTGAACAAAACAGCAGACGACGAAGACGTTCAGTGGAG
GAGAATGCATTGACACTAAATGATGATCTTTCCAAAGATTATGACATTCG
AACTGGATTGATTATCGTAACAGAAAATTCTAAAAATGACGACTCATTCC
AACAAGACACCCAAGAATCACCCAACAATACTCAATTCTTTCAAACCACG
ACCAATATCATTCTCATTGCAATCATCTTGGTAATGTTGACTTTAGTATG
TTCTCTCTTGGTTTTTGTTGGCTTACGTCGCCGTCGAAGTGGTTCAAAAA
GATATAGTGTCCCTGGATCTCCTTCGAAGATGGAAATGCATTAACAGGTA
TCCATCAATTTGAACAAAACAAACGCATATCAAAATGATCTATTGGAAAG
GATTGATACCTTCGCCACATATTCCGTTGAATGCAATATTCCACAAGGTG
TGAATGTAACACATGAAAATGGAGTGAATATTACCAAAACAGCAGATTTG
GTTGAAGGTGTATCAAGTTCGACTGACGAATTCACTGTCTCGATAAATCT
CCATAAATCatcaaatttcaatgaaagtctTACATATCCTGCAGTTATTG
ATAGATTGGGACGTTTTAATTTGGAACTTGAAATTGACACTGTTGCAAAT
TTGTATATTATTCCACGAGATTGTCATGGTACTTCTACATCTGATCGAGA
TGACGTCATTCGGGAAGCTATTGTCACTGACGGATGTCCCAATACTGACC
ACGTTTTCAAGGAAGAGTCTACCGCTGACAATGGAAAGAAATTCCGATTT
TCATTGAACGTATTCCGATTCAAAAACTCGAACGGTATGGTCTACATTCA
TTGCTCTGCTCACGTCTGTTTGGAAGGAAGTAATACCACAGAATGTCAAT
TCGGTTGTGAACAAAACAGCAGACGACGAAGACGTTCAGTGGAGGAGAAT
GCATTGACACTAAATGATGATCTTTCCAAAGATTATGACATTCGAACTGG
ATTGATTATCGTAACAGAAAATTCTAAAAATGACGACTCATTCCAACAAG
ACACCCAAGAATCACCCAACAATACTCAATTCTTTCAAACCACGACCAAT
ATCATTCTCATTGCAATCATCTTGGTAATGTTGACTTTAGTATGTTCTCT
CTTGGTTTTTGTTGGCTTACGTCGCCGTCGAAGTGGTTCAAAAAGATATA
GTGTCCCTGGATCTCCTTCGAAGATGGAAATGCATTAACAGGTATCCATC
AATTTGAACAAAACAAACGCATATCAAAATGATCTATTGGAAAGGATTGA
TACCTTCGCCACATATTCCGTTGAATGCAATATTCCACAAGGTGTGAATG
TAACACATGAAAATGGAGTGAATATTACCAAAACAGCAGATTTGGTTGAA
GGTGTATCAAGTTCGACTGACGAATTCACTGTCTCGATAAATCTCCATAA
ATCatcaaatttcaatgaaagtctTACATATCCTGCAGTTATTGATAGAT
TGGGACGTTTTAATTTGGAACTTGAAATTGACACTGTTGCAAATTTGTAT
ATTATTCCACGAGATTGTCATGGTACTTCTACATCTGATCGAGATGACGT
CATTCGGGAAGCTATTGTCACTGACGGATGTCCCAATACTGACCACGTTT
TCAAGGAAGAGTCTACCGCTGACAATGGAAAGAAATTCCGATTTTCATTG
AACGTATTCCGATTCAAAAACTCGAACGGTATGGTCTACATTCATTGCTC
TGCTCACGTCTGTTTGGAAGGAAGTAATACCACAGAATGTCAATTCGGTT
GTGAACAAAACAGCAGACGACGAAGACGTTCAGTGGAGGAGAATGCATTG
ACACTAAATGATGATCTTTCCAAAGATTATGACATTCGAACTGGATTGAT
TATCGTAACAGAAAATTCTAAAAATGACGACTCATTCCAACAAGACACCC
AAGAATCACCCAACAATACTCAATTCTTTCAAACCACGACCAATATCATT
CTCATTGCAATCATCTTGGTAATGTTGACTTTAGTATGTTCTCTCTTGGT
TTTTGTTGGCTTACGTCGCCGTCGAAGTGGTTCAAAAAGATATAGTGTCC
CTGGATCTCCTTCGAAGATGGAAATGCATTAACAGGTATCCATCAATTTG
AACAAAACAAACGCATATCAAAATGATCTATTGGAAAGGATTGATACCTT
CGCCACATATTCCGTTGAATGCAATATTCCACAAGGTGTGAATGTAACAC
ATGAAAATGGAGTGAATATTACCAAAACAGCAGATTTGGTTGAAGGTGTA
TCAAGTTCGACTGACGAATTCACTGTCTCGATAAATCTCCATAAATCatc
aaatttcaatgaaagtctTACATATCCTGCAGTTATTGATAGATTGGGAC
GTTTTAATTTGGAACTTGAAATTGACACTGTTGCAAATTTGTATATTATT
CCACGAGATTGTCATGGTACTTCTACATCTGATCGAGATGACGTCATTCG
GGAAGCTATTGTCACTGACGGATGTCCCAATACTGACCACGTTTTCAAGG
AAGAGTCTACCGCTGACAATGGAAAGAAATTCCGATTTTCATTGAACGTA
TTCCGATTCAAAAACTCGAACGGTATGGTCTACATTCATTGCTCTGCTCA
CGTCTGTTTGGAAGGAAGTAATACCACAGAATGTCAATTCGGTTGTGAAC
AAAACAGCAGACGACGAAGACGTTCAGTGGAGGAGAATGCATTGACACTA
AATGATGATCTTTCCAAAGATTATGACATTCGAACTGGATTGATTATCGT
AACAGAAAATTCTAAAAATGACGACTCATTCCAACAAGACACCCAAGAAT
CACCCAACAATACTCAATTCTTTCAAACCACGACCAATATCATTCTCATT
GCAATCATCTTGGTAATGTTGACTTTAGTATGTTCTCTCTTGGTTTTTGT
TGGCTTACGTCGCCGTCGAAGTGGTTCAAAAAGATATAGTGTCCCTGGAT
CTCCTTCGAAGATGGAAATGCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065791-exon-scaffold_445-1491911889:18635..18808 | TCONS_00065791-exon-scaffold_445-1491911889:18635..18808 | Clytia hemisphaerica | exon |
| TCONS_00065791-exon-scaffold_445-1510915933:18635..18808 | TCONS_00065791-exon-scaffold_445-1510915933:18635..18808 | Clytia hemisphaerica | exon |
| TCONS_00065791-exon-scaffold_445-1575043694:18635..18808 | TCONS_00065791-exon-scaffold_445-1575043694:18635..18808 | Clytia hemisphaerica | exon |
| TCONS_00065791-exon-scaffold_445-1491911889:19214..19430 | TCONS_00065791-exon-scaffold_445-1491911889:19214..19430 | Clytia hemisphaerica | exon |
| TCONS_00065791-exon-scaffold_445-1510915933:19214..19430 | TCONS_00065791-exon-scaffold_445-1510915933:19214..19430 | Clytia hemisphaerica | exon |
| TCONS_00065791-exon-scaffold_445-1575043694:19214..19430 | TCONS_00065791-exon-scaffold_445-1575043694:19214..19430 | Clytia hemisphaerica | exon |
| TCONS_00065791-exon-scaffold_445-1491911889:19720..20015 | TCONS_00065791-exon-scaffold_445-1491911889:19720..20015 | Clytia hemisphaerica | exon |
| TCONS_00065791-exon-scaffold_445-1510915933:19720..20015 | TCONS_00065791-exon-scaffold_445-1510915933:19720..20015 | Clytia hemisphaerica | exon |
| TCONS_00065791-exon-scaffold_445-1575043694:19720..20015 | TCONS_00065791-exon-scaffold_445-1575043694:19720..20015 | Clytia hemisphaerica | exon |
| TCONS_00065791-exon-scaffold_445-1491911889:20277..20634 | TCONS_00065791-exon-scaffold_445-1491911889:20277..20634 | Clytia hemisphaerica | exon |
| TCONS_00065791-exon-scaffold_445-1510915933:20277..20634 | TCONS_00065791-exon-scaffold_445-1510915933:20277..20634 | Clytia hemisphaerica | exon |
| TCONS_00065791-exon-scaffold_445-1575043694:20277..20634 | TCONS_00065791-exon-scaffold_445-1575043694:20277..20634 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_445 | supercontig | scaffold_445:18635..20634 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001507 | ZP_dom |
Blast
The following BLAST results are available for this feature:
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