TCONS_00065789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065789
Unique NameTCONS_00065789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065789 ID=TCONS_00065789|Name=TCONS_00065789|organism=Clytia hemisphaerica|type=transcript|length=767bp
NNCGTTGGCTGGAAGCAAGCCACACTTCTTTAATTGTTCAAACTTTGATG
GAGTGACGGTTAGTTCCACGCCATTTCGATCGACAAAAGTAACCATTTTG
GGAGCTAACTTTTGGctaacttttttatgatggcTGTTTTTAGCTAAGCT
TGATTCAACTTTTGATGGTTGACCTGCGTTGGCTGGAAGCAAGCCACACT
TCTTTAATTGTTCAAACTTTGATGGAGTGACTGTTAATTCCACACCATTT
CGATCCACAAAGGTGACCATCTTGGTtgcttatttttcacttttcacttT
CACTAACTTTATTACGATAACTGACAGTTTTGACAAGTAAATTCAGGATG
AGAATTACTTCTGCATGCGCTGAGaggtttttttcaaaactgaagtTGTT
TAGAATTATGAAAACTTTTGATAtgcatgatttttttatttgacgtcaaa
tatttcagcTACATTCTACTTCTACGTCACACTACAAGAAAATTAACTTT
CTCTTTCAAATTGCAGTATATTGCATAGTATAGTCGACTGTTCGAAAGGC
CTAAAGGCCCCAAAAAACGTTGGTTTCAACAACATCTTCTTACACCATTT
TTGACCTACCTGAagatcctataaattaacccatatccgtccgttcgttt
gtccgttcgtctgttacaagcttttcttgGGATTGCCTCATtggttttat
ttgattttttgcaaaatgatgcAAAAAAACTGCCCAACAATGGAGTTTTA
AGGACCCTTGTGCAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_444:176435..177201

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065789 ID=TCONS_00065789|Name=TCONS_00065789|organism=Clytia hemisphaerica|type=transcript|length=767bp|location=Sequence derived from alignment at scaffold_444:176435..177201 (Clytia hemisphaerica)
TTTTGCACAAGGGTCCTTAAAACTCCATTGTTGGGCAGTTTTTTTgcatc
attttgcaaaaaatcaaataaaaccaATGAGGCAATCCcaagaaaagctt
gtaacagacgaacggacaaacgaacggacggatatgggttaatttatagg
atctTCAGGTAGGTCAAAAATGGTGTAAGAAGATGTTGTTGAAACCAACG
TTTTTTGGGGCCTTTAGGCCTTTCGAACAGTCGACTATACTATGCAATAT
ACTGCAATTTGAAAGAGAAAGTTAATTTTCTTGTAGTGTGACGTAGAAGT
AGAATGTAgctgaaatatttgacgtcaaataaaaaaatcatgcaTATCAA
AAGTTTTCATAATTCTAAACAacttcagttttgaaaaaaacctCTCAGCG
CATGCAGAAGTAATTCTCATCCTGAATTTACTTGTCAAAACTGTCAGTTA
TCGTAATAAAGTTAGTGAaagtgaaaagtgaaaaataagcaACCAAGATG
GTCACCTTTGTGGATCGAAATGGTGTGGAATTAACAGTCACTCCATCAAA
GTTTGAACAATTAAAGAAGTGTGGCTTGCTTCCAGCCAACGCAGGTCAAC
CATCAAAAGTTGAATCAAGCTTAGCTAAAAACAgccatcataaaaaagtt
agCCAAAAGTTAGCTCCCAAAATGGTTACTTTTGTCGATCGAAATGGCGT
GGAACTAACCGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGGCT
TGCTTCCAGCCAACGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041221XLOC_041221Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065789-exon-scaffold_444-1491911889:176435..177201TCONS_00065789-exon-scaffold_444-1491911889:176435..177201Clytia hemisphaericaexon
TCONS_00065789-exon-scaffold_444-1510915933:176435..177201TCONS_00065789-exon-scaffold_444-1510915933:176435..177201Clytia hemisphaericaexon
TCONS_00065789-exon-scaffold_444-1575043694:176435..177201TCONS_00065789-exon-scaffold_444-1575043694:176435..177201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:176435..177201 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12716	0.124001	0.155692	0.281719	0	0	0	0	0.0535778	0.0663648	0	0.0846881	0	0.0439136	0	0	0.0954588	0.538132	0	0	0.0614729	0	0	0	0	0.0609233	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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