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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065788 ID=TCONS_00065788|Name=TCONS_00065788|organism=Clytia hemisphaerica|type=transcript|length=906bp
GGTGAAAGATGGAAAATTCACGAATATCTAATTGATGGATACACAGTTGT
AAACCACACCAATACTGAGAATAATACAGGACGTGGTATCGTCATCCTAG
GACATACCAGTGTAGACCACCTTACAGTTGACATTGAATGTCCTGTAGCA
CTGGAGGAGGCGTGCATCATTGAAGTACGTCTGGCTGGAAAAGATATGCT
TTGCTTTGCATGCGTCTACCGCAGTCCAACGAATCAATCAAATTCTGGAG
AAAATAATGCCAATCTTAACCAGCTCTTACAAATTATATCAGAAGATAAG
AGATACACGCATCGTTGCATCATTGGCGACTTCAATTTTCCAACTATAAA
TTGGAAGAACTGGACAAGCCCACATGTAGAGGAAATTCCTGGAAGCATTA
CGTGATTCATTCCTTTTCCAACATACGAATGAACCTACCAGATGTCGAGG
TACTGACGAGCCTTCACTGTTTGACCTCATCTTGACAGATGAAAGAGATC
AGGTTCAAGATCTAAAGCTCCTAAGCCCTTTAGGAAAAAGTGATCATAGC
GTTCTCTCTTTTAGCTTTAAATGTTATATTGAACTTAAAGCACCAACCAA
AAGATACACCTACCACTTGGCAGACTTTAAGTCGATGAAAAGTCATCTGC
AAAGAATCAACTGGGCGAGAGAATTCATAGATACCTCACATGAGTCGATC
GAGGAGCTctggtcaaaattcaaaacaaaacttcttcaACTCAGAGATAA
ATTTGTCCCAAGAAAAGAGTTAGGAGCGCCTCACTGgaaaaagaaaggga
aaattCCAATTAATACTGAACTACGTAATGACATCAAAGAAAAGAGGCGA
CTTCACAGGATCtggttaaaatcaaaatcatcaccCACAAACAGACGTCA
AGCAAG Run BLAST on NCBI protein sequence of TCONS_00065788-protein >TCONS_00065788-protein ID=TCONS_00065788-protein|Name=TCONS_00065788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
GERWKIHEYLIDGYTVVNHTNTENNTGRGIVILGHTSVDHLTVDIECPVA
LEEACIIEVRLAGKDMLCFACVYRSPTNQSNSGENNANLNQLLQIISEDK
RYTHRCIIGDFNFPTINWKNWTSPHVEEIPGSIT Run BLAST on NCBI transcript from alignment at scaffold_444:171811..172716 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065788 ID=TCONS_00065788|Name=TCONS_00065788|organism=Clytia hemisphaerica|type=transcript|length=906bp|location=Sequence derived from alignment at scaffold_444:171811..172716 (Clytia hemisphaerica)
CTTGCTTGACGTCTGTTTGTGggtgatgattttgattttaaccaGATCCT
GTGAAGTCGCCTCTTTTCTTTGATGTCATTACGTAGTTCAGTATTAATTG
GaattttccctttctttttcCAGTGAGGCGCTCCTAACTCTTTTCTTGGG
ACAAATTTATCTCTGAGTtgaagaagttttgttttgaattttgaccagAG
CTCCTCGATCGACTCATGTGAGGTATCTATGAATTCTCTCGCCCAGTTGA
TTCTTTGCAGATGACTTTTCATCGACTTAAAGTCTGCCAAGTGGTAGGTG
TATCTTTTGGTTGGTGCTTTAAGTTCAATATAACATTTAAAGCTAAAAGA
GAGAACGCTATGATCACTTTTTCCTAAAGGGCTTAGGAGCTTTAGATCTT
GAACCTGATCTCTTTCATCTGTCAAGATGAGGTCAAACAGTGAAGGCTCG
TCAGTACCTCGACATCTGGTAGGTTCATTCGTATGTTGGAAAAGGAATGA
ATCACGTAATGCTTCCAGGAATTTCCTCTACATGTGGGCTTGTCCAGTTC
TTCCAATTTATAGTTGGAAAATTGAAGTCGCCAATGATGCAACGATGCGT
GTATCTCTTATCTTCTGATATAATTTGTAAGAGCTGGTTAAGATTGGCAT
TATTTTCTCCAGAATTTGATTGATTCGTTGGACTGCGGTAGACGCATGCA
AAGCAAAGCATATCTTTTCCAGCCAGACGTACTTCAATGATGCACGCCTC
CTCCAGTGCTACAGGACATTCAATGTCAACTGTAAGGTGGTCTACACTGG
TATGTCCTAGGATGACGATACCACGTCCTGTATTATTCTCAGTATTGGTG
TGGTTTACAACTGTGTATCCATCAATTAGATATTCGTGAATTTTCCATCT
TTCACC Coding sequence (CDS) from alignment at scaffold_444:171811..172716 >TCONS_00065788 ID=TCONS_00065788|Name=TCONS_00065788|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_444:171811..172716 (Clytia hemisphaerica)
TCACGTAATGCTTCCAGGAATTTCCTCTACATGTGGGCTTGTCCAGTTCT
TCCAATTTATAGTTGGAAAATTGAAGTCGCCAATGATGCAACGATGCGTG
TATCTCTTATCTTCTGATATAATTTGTAAGAGCTGGTTAAGATTGGCATT
ATTTTCTCCAGAATTTGATTGATTCGTTGGACTGCGGTAGACGCATGCAA
AGCAAAGCATATCTTTTCCAGCCAGACGTACTTCAATGATGCACGCCTCC
TCCAGTGCTACAGGACATTCAATGTCAACTGTAAGGTGGTCTACACTGGT
ATGTCCTAGGATGACGATACCACGTCCTGTATTATTCTCAGTATTGGTGT
GGTTTACAACTGTGTATCCATCAATTAGATATTCGTGAATTTTCCATCTT
TCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065788-exon-scaffold_444-1491911889:171811..172716 | TCONS_00065788-exon-scaffold_444-1491911889:171811..172716 | Clytia hemisphaerica | exon |
| TCONS_00065788-exon-scaffold_444-1510915933:171811..172716 | TCONS_00065788-exon-scaffold_444-1510915933:171811..172716 | Clytia hemisphaerica | exon |
| TCONS_00065788-exon-scaffold_444-1575043694:171811..172716 | TCONS_00065788-exon-scaffold_444-1575043694:171811..172716 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_444 | supercontig | scaffold_444:171811..172716 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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