TCONS_00065785 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065785
Unique NameTCONS_00065785
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length584

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065785 ID=TCONS_00065785|Name=TCONS_00065785|organism=Clytia hemisphaerica|type=transcript|length=584bp
GAATCTTGGCGGTTAATTaatttctatttaaaaaattttgtttcgtTTCA
ATCTATTATAGTAAATTAGTTTTCTCTACCGGAAATAGTTTTCTCAATGA
CGTATCTGTCAGCGAAATAATTGCTTAACGAAAGAACAACTTAATTGCTT
CTTACTTATATACAAGGATTATATGTTGAGCTATATATACACGCGGGCTA
AtgaattcaaataaaaacaaaaaaatacttaCGACGTAAGCGTCCTTACG
TTTACTTTGACGGCTGGGTTCACAACAGTGTCGCTGAGTCTGGAGCGTCC
AATGCACGTCTTTTGTCGACAATTCTTCTTTTGTaacttcttcttctttt
gtaacttcttcttcttttgtaACTTCTTCTTCTTAATTTCTTCTTCGTAA
TTTATAATAACCCCTTTAACATCAATACACTAATTTTCTTCTGTGTAATT
TACCTCTTTAACATCGATACAACATCGATACACTAATATTAAATTTGATA
GCcctatttcatttttcttaaaacTAAACGCTGTCTGCGGGTATTTTCAT
CGGGACGTCATATGTAGACTGGGCTAACAAAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_444:166450..167033

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065785 ID=TCONS_00065785|Name=TCONS_00065785|organism=Clytia hemisphaerica|type=transcript|length=584bp|location=Sequence derived from alignment at scaffold_444:166450..167033 (Clytia hemisphaerica)
CCCTTTGTTAGCCCAGTCTACATATGACGTCCCGATGAAAATACCCGCAG
ACAGCGTTTAgttttaagaaaaatgaaataggGCTATCAAATTTAATATT
AGTGTATCGATGTTGTATCGATGTTAAAGAGGTAAATTACACAGAAGAAA
ATTAGTGTATTGATGTTAAAGGGGTTATTATAAATTACGAAGAAGAAATT
AAGAAGAAGAAGTtacaaaagaagaagaagttacaaaagaagaagaagtt
ACAAAAGAAGAATTGTCGACAAAAGACGTGCATTGGACGCTCCAGACTCA
GCGACACTGTTGTGAACCCAGCCGTCAAAGTAAACGTAAGGACGCTTACG
TCGtaagtatttttttgtttttatttgaattcaTTAGCCCGCGTGTATAT
ATAGCTCAACATATAATCCTTGTATATAAGTAAGAAGCAATTAAGTTGTT
CTTTCGTTAAGCAATTATTTCGCTGACAGATACGTCATTGAGAAAACTAT
TTCCGGTAGAGAAAACTAATTTACTATAATAGATTGAAacgaaacaaaat
tttttaaatagaaattAATTAACCGCCAAGATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041217XLOC_041217Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065785-exon-scaffold_444-1491911889:166450..167033TCONS_00065785-exon-scaffold_444-1491911889:166450..167033Clytia hemisphaericaexon
TCONS_00065785-exon-scaffold_444-1510915933:166450..167033TCONS_00065785-exon-scaffold_444-1510915933:166450..167033Clytia hemisphaericaexon
TCONS_00065785-exon-scaffold_444-1575043694:166450..167033TCONS_00065785-exon-scaffold_444-1575043694:166450..167033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:166450..167033 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.16091	0.092257	0	0	0	0.505651	0.383094	0	1.19196	0.512428	0.837425	0.457893	1.3495	0.594334	0.447847	0.56652	0.321991	0.454382	1.1755	0.767638	0.214915	0.487491	0.183966	0.358718	1.03145	0	0.473322	0	0.743193	0.286647
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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