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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065784 ID=TCONS_00065784|Name=TCONS_00065784|organism=Clytia hemisphaerica|type=transcript|length=1076bp
TCAAGTTTTTCGCCAGATTTTGGAACTGTACAGTTTTTGTAAACATCGGC
TGGCTTGACTTTTGCACAATTGATAAAAGGGTCTAGTAGGTTAATTGATC
TGTCGAAACTGAATAAGGACATGGAAACAAGGAGTGTTAATAGCAAATGA
CTGGTGAGACCTGGCCTGAAACTATTGATGGTCTTTTTGGAACTTAGTTG
GAAAATATCGATCTGTTTTGAATTGTTTGTGGTAATAATTGCATTCGTTT
TCGGTTGACGACGTGATACTTTTCTTAAGGCGGCTGAAGGAATTTCATCA
ATCTGGTTCGCGGTTTTTCTAGGGCCAATGTATTTTGGAATCAAACCTTT
TtgtcttatttcttttttttgttgctgGGCCAAGGAGGTCCTAGTAAGAT
CAAAATCATTAATCGAAGGCGACGCTTTTTTCGGAGGATGAGTCATTACG
GAGATAATAGGTTTTGTAACCGTATCAAGATCTATTCTCGAAGCGTGTAC
TAGCGGCCAGAGAGCCGGAATACAAAGTGGCCTGTCAGAAGGATTATGTA
AAACGACTTCCAAAACGTTCACGTTTAGTTCGTGGGTGATCGGATTAACT
AAGGTCAGTTCATACGTTTCCGACTCGATCGCTTCTAAAAAGTACTCATG
GCCATTTGAGGCCtcttcaggatttaaaagttGGCAAACAGCCATGGACT
TCGGTGGAATTGTTAGGTTCTTACCTTATTGTCTAAAATCAATTCTCCTT
CGACTAAATCAATTACTGCCTTTTTGGTAGACAAAAAATCTTGACCGAGT
ATAACGTTAAAGCTACTCGGTAGGATCAAAAATTTATGTGTTAGTACTAC
ATTATCAAACTGCATAGGAAGCGTCAATTCGCCTTTTATATTTGAGCTAG
CTTGGCCCGCAAATGTTTGAACGGAATGAAAAGAAGGCATTTGTCTAGGA
TAATTAATGGGGCAGACGTTGGCAAGAAAATCTTTATCGATGCAGGACAC
TGTCGCACCAGTGTCAATAAGGAATTTACAGTCCATGTTGAATACTTTTC
CATTTACGTACACTAAAGGGCTAGGT Run BLAST on NCBI protein sequence of TCONS_00065784-protein >TCONS_00065784-protein ID=TCONS_00065784-protein|Name=TCONS_00065784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MAVCQLLNPEEASNGHEYFLEAIESETYELTLVNPITHELNVNVLEVVLH
NPSDRPLCIPALWPLVHASRIDLDTVTKPIISVMTHPPKKASPSINDFDL
TRTSLAQQQKKEIRQKGLIPKYIGPRKTANQIDEIPSAALRKVSRRQPKT
NAIITTNNSKQIDIFQLSSKKTINSFRPGLTSHLLLTLLVSMSLFSFDRS
INLLDPFINCAKVKPADVYKNCTVPKSGEKL Run BLAST on NCBI transcript from alignment at scaffold_444:162876..163951 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065784 ID=TCONS_00065784|Name=TCONS_00065784|organism=Clytia hemisphaerica|type=transcript|length=1076bp|location=Sequence derived from alignment at scaffold_444:162876..163951 (Clytia hemisphaerica)
ACCTAGCCCTTTAGTGTACGTAAATGGAAAAGTATTCAACATGGACTGTA
AATTCCTTATTGACACTGGTGCGACAGTGTCCTGCATCGATAAAGATTTT
CTTGCCAACGTCTGCCCCATTAATTATCCTAGACAAATGCCTTCTTTTCA
TTCCGTTCAAACATTTGCGGGCCAAGCTAGCTCAAATATAAAAGGCGAAT
TGACGCTTCCTATGCAGTTTGATAATGTAGTACTAACACATAAATTTTTG
ATCCTACCGAGTAGCTTTAACGTTATACTCGGTCAAGATTTTTTGTCTAC
CAAAAAGGCAGTAATTGATTTAGTCGAAGGAGAATTGATTTTAGACAATA
AGGTAAGAACCTAACAATTCCACCGAAGTCCATGGCTGTTTGCCaacttt
taaatcctgaagaGGCCTCAAATGGCCATGAGTACTTTTTAGAAGCGATC
GAGTCGGAAACGTATGAACTGACCTTAGTTAATCCGATCACCCACGAACT
AAACGTGAACGTTTTGGAAGTCGTTTTACATAATCCTTCTGACAGGCCAC
TTTGTATTCCGGCTCTCTGGCCGCTAGTACACGCTTCGAGAATAGATCTT
GATACGGTTACAAAACCTATTATCTCCGTAATGACTCATCCTCCGAAAAA
AGCGTCGCCTTCGATTAATGATTTTGATCTTACTAGGACCTCCTTGGCCc
agcaacaaaaaaaagaaataagacaAAAAGGTTTGATTCCAAAATACATT
GGCCCTAGAAAAACCGCGAACCAGATTGATGAAATTCCTTCAGCCGCCTT
AAGAAAAGTATCACGTCGTCAACCGAAAACGAATGCAATTATTACCACAA
ACAATTCAAAACAGATCGATATTTTCCAACTAAGTTCCAAAAAGACCATC
AATAGTTTCAGGCCAGGTCTCACCAGTCATTTGCTATTAACACTCCTTGT
TTCCATGTCCTTATTCAGTTTCGACAGATCAATTAACCTACTAGACCCTT
TTATCAATTGTGCAAAAGTCAAGCCAGCCGATGTTTACAAAAACTGTACA
GTTCCAAAATCTGGCGAAAAACTTGA Coding sequence (CDS) from alignment at scaffold_444:162876..163951 >TCONS_00065784 ID=TCONS_00065784|Name=TCONS_00065784|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at scaffold_444:162876..163951 (Clytia hemisphaerica)
ATGGCTGTTTGCCaacttttaaatcctgaagaGGCCTCAAATGGCCATGA
GTACTTTTTAGAAGCGATCGAGTCGGAAACGTATGAACTGACCTTAGTTA
ATCCGATCACCCACGAACTAAACGTGAACGTTTTGGAAGTCGTTTTACAT
AATCCTTCTGACAGGCCACTTTGTATTCCGGCTCTCTGGCCGCTAGTACA
CGCTTCGAGAATAGATCTTGATACGGTTACAAAACCTATTATCTCCGTAA
TGACTCATCCTCCGAAAAAAGCGTCGCCTTCGATTAATGATTTTGATCTT
ACTAGGACCTCCTTGGCCcagcaacaaaaaaaagaaataagacaAAAAGG
TTTGATTCCAAAATACATTGGCCCTAGAAAAACCGCGAACCAGATTGATG
AAATTCCTTCAGCCGCCTTAAGAAAAGTATCACGTCGTCAACCGAAAACG
AATGCAATTATTACCACAAACAATTCAAAACAGATCGATATTTTCCAACT
AAGTTCCAAAAAGACCATCAATAGTTTCAGGCCAGGTCTCACCAGTCATT
TGCTATTAACACTCCTTGTTTCCATGTCCTTATTCAGTTTCGACAGATCA
ATTAACCTACTAGACCCTTTTATCAATTGTGCAAAAGTCAAGCCAGCCGA
TGTTTACAAAAACTGTACAGTTCCAAAATCTGGCGAAAAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065784-exon-scaffold_444-1491911889:162876..163951 | TCONS_00065784-exon-scaffold_444-1491911889:162876..163951 | Clytia hemisphaerica | exon |
| TCONS_00065784-exon-scaffold_444-1510915933:162876..163951 | TCONS_00065784-exon-scaffold_444-1510915933:162876..163951 | Clytia hemisphaerica | exon |
| TCONS_00065784-exon-scaffold_444-1575043694:162876..163951 | TCONS_00065784-exon-scaffold_444-1575043694:162876..163951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_444 | supercontig | scaffold_444:162876..163951 . |
Blast
The following BLAST results are available for this feature:
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