TCONS_00065783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065783
Unique NameTCONS_00065783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065783 ID=TCONS_00065783|Name=TCONS_00065783|organism=Clytia hemisphaerica|type=transcript|length=407bp
TGAATATTTGcttcttgataaaaaaaatcatttaacttCAAGCAAGGAAA
GTTTATGAACAACTTTtctaatatatattatatatatatatatttgacAG
TTAAACCAAAAATTTGGTTTACAGTTACTGGCCCTATTTTGGTTCTTTAT
ATTTTAAACATTGTAACATCTGGCATATGTGTAGTCATCTAGCATGCCAA
ACACATATCAGCATTAGCCATTCAATTAGACTGTCAAAATGTGGATGGTA
CTTTGTTTAAAAACTAAAGGACAAGCTTAAATTGTAATAACCGAATTGAT
AAAAAATCTTGATAGCACTTTTATATCAGGTGTGCATGCTGTTAGTCATT
TTACATGCCAAAACAGCATCATCAGTCAAAACATTCTAAACCATGTTTAA
ACTGTAC
Run BLAST on NCBI

transcript from alignment at scaffold_444:159403..159809

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065783 ID=TCONS_00065783|Name=TCONS_00065783|organism=Clytia hemisphaerica|type=transcript|length=407bp|location=Sequence derived from alignment at scaffold_444:159403..159809 (Clytia hemisphaerica)
GTACAGTTTAAACATGGTTTAGAATGTTTTGACTGATGATGCTGTTTTGG
CATGTAAAATGACTAACAGCATGCACACCTGATATAAAAGTGCTATCAAG
ATTTTTTATCAATTCGGTTATTACAATTTAAGCTTGTCCTTTAGTTTTTA
AACAAAGTACCATCCACATTTTGACAGTCTAATTGAATGGCTAATGCTGA
TATGTGTTTGGCATGCTAGATGACTACACATATGCCAGATGTTACAATGT
TTAAAATATAAAGAACCAAAATAGGGCCAGTAACTGTAAACCAAATTTTT
GGTTTAACTgtcaaatatatatatatataatatatattagaAAAGTTGTT
CATAAACTTTCCTTGCTTGaagttaaatgattttttttatcaagaagCAA
ATATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041215XLOC_041215Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065783-exon-scaffold_444-1491911889:159403..159809TCONS_00065783-exon-scaffold_444-1491911889:159403..159809Clytia hemisphaericaexon
TCONS_00065783-exon-scaffold_444-1510915933:159403..159809TCONS_00065783-exon-scaffold_444-1510915933:159403..159809Clytia hemisphaericaexon
TCONS_00065783-exon-scaffold_444-1575043694:159403..159809TCONS_00065783-exon-scaffold_444-1575043694:159403..159809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:159403..159809 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.69978	2.07044	0.811509	0.932809	5.87752	4.37779	0.601542	1.37676	3.80491	1.47265	3.67934	5.02899	1.78496	0.855378	5.04307	3.5191	6.11074	7.44659	0.761891	1.59453	7.4592	4.28217	3.96393	5.5567	0	0.494789	4.06761	0.624791	0.994382	0.405247
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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