TCONS_00065782 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065782
Unique NameTCONS_00065782
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065782 ID=TCONS_00065782|Name=TCONS_00065782|organism=Clytia hemisphaerica|type=transcript|length=379bp
agttaCGCATTGAACGTGTCTTGAAACGGCCGGATAAGAACTATCGTCAC
GCTGGACAACCATACGTTTACGAACAAAGAGAGACGGGCCACAACCAGCA
CCCTTGTtttcgtgggtcaaaattcaGGGCTTATAGACGTCCTTATTTTA
CCCAGATACTATCTCACTTAAAAGAATTTTATATAGAATTTTCTTCAGTT
TGCTATGGTTTTCATCAAAGTATAGCTTGAAATGACTGTGGTTTaacgtt
ctttttttttttttaactgtgACACTTTTGCGCCTCTAACTTCTTTTGCA
GTATGATGAATTTTTTCGGAATTTcgttgaaaaatctttaatttgtataa
ttttctTCCAACTTCTTGCCAAATTCGCG
Run BLAST on NCBI

transcript from alignment at scaffold_444:157928..158306

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065782 ID=TCONS_00065782|Name=TCONS_00065782|organism=Clytia hemisphaerica|type=transcript|length=379bp|location=Sequence derived from alignment at scaffold_444:157928..158306 (Clytia hemisphaerica)
CGCGAATTTGGCAAGAAGTTGGAagaaaattatacaaattaaagattttt
caacgAAATTCCGAAAAAATTCATCATACTGCAAAAGAAGTTAGAGGCGC
AAAAGTGTcacagttaaaaaaaaaaaaagaacgttAAACCACAGTCATTT
CAAGCTATACTTTGATGAAAACCATAGCAAACTGAAGAAAATTCTATATA
AAATTCTTTTAAGTGAGATAGTATCTGGGTAAAATAAGGACGTCTATAAG
CCCtgaattttgacccacgaaaACAAGGGTGCTGGTTGTGGCCCGTCTCT
CTTTGTTCGTAAACGTATGGTTGTCCAGCGTGACGATAGTTCTTATCCGG
CCGTTTCAAGACACGTTCAATGCGtaact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041214XLOC_041214Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065782-exon-scaffold_444-1491911889:157928..158306TCONS_00065782-exon-scaffold_444-1491911889:157928..158306Clytia hemisphaericaexon
TCONS_00065782-exon-scaffold_444-1510915933:157928..158306TCONS_00065782-exon-scaffold_444-1510915933:157928..158306Clytia hemisphaericaexon
TCONS_00065782-exon-scaffold_444-1575043694:157928..158306TCONS_00065782-exon-scaffold_444-1575043694:157928..158306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:157928..158306 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.58413	2.27357	0.600412	0.506842	5.69799	3.37728	2.53162	2.7706	4.71552	2.83673	1.60171	3.83221	1.30559	0.731616	4.73836	1.83923	1.87179	3.05887	0	0.566441	7.21665	6.13095	4.48083	0.994254	0	0	0	1.88913	3.32132	8.59775
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065782 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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