TCONS_00065779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065779
Unique NameTCONS_00065779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065779 ID=TCONS_00065779|Name=TCONS_00065779|organism=Clytia hemisphaerica|type=transcript|length=535bp
TGCCAATGGAATAACGAACTAACAAAATTGGTGGACTATCATCTTTTTCG
AAATCTTGACGAACGCCAAAAACTCAGAAAGTTTTTCAAGCCACAACCAA
aagaaatcttctttttttaatgacaatgaATTTTATCCAATTCGAAGAAG
TCTTATTTTATTACCTTTCTGAAACTTAAGAATCTTTCACGGctcaaaat
taaaacattttgagaATCACGAGgcttatttatttaatttatttaaaaga
CAACTCATTTGAAAGAATATAgtcaattttatatattttaatttatttat
tcgtAGTAATATATTTCCCATATCAATCTCTATCAACTAATCATTCTTAA
CATTTACAAGTTATGGAGATCATTTTTGTCCTGTGCTTAAAAGATAAAAG
TCGTGACATGAATGTTCTGGTTCTTACAAAGAGTCCCTCTTGAtgtattg
tcatttttaaaaacgatgcacatttgaaaattttaatcatATTTGGTATT
TTGATAGAATGTAGTCTTTCTTTCCTACTTGTAGC
Run BLAST on NCBI

transcript from alignment at scaffold_444:152511..153045

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065779 ID=TCONS_00065779|Name=TCONS_00065779|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at scaffold_444:152511..153045 (Clytia hemisphaerica)
GCTACAAGTAGGAAAGAAAGACTACATTCTATCAAAATACCAAATatgat
taaaattttcaaatgtgcatcgtttttaaaaatgacaatacaTCAAGAGG
GACTCTTTGTAAGAACCAGAACATTCATGTCACGACTTTTATCTTTTAAG
CACAGGACAAAAATGATCTCCATAACTTGTAAATGTTAAGAATGATTAGT
TGATAGAGATTGATATGGGAAATATATTACTacgaataaataaattaaaa
tatataaaattgacTATATTCTTTCAAATGAGTTGtcttttaaataaatt
aaataaataagcCTCGTGATtctcaaaatgttttaattttgagCCGTGAA
AGATTCTTAAGTTTCAGAAAGGTAATAAAATAAGACTTCTTCGAATTGGA
TAAAATtcattgtcattaaaaaaagaagatttcttTTGGTTGTGGCTTGA
AAAACTTTCTGAGTTTTTGGCGTTCGTCAAGATTTCGAAAAAGATGATAG
TCCACCAATTTTGTTAGTTCGTTATTCCATTGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041211XLOC_041211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065779-exon-scaffold_444-1491911889:152511..153045TCONS_00065779-exon-scaffold_444-1491911889:152511..153045Clytia hemisphaericaexon
TCONS_00065779-exon-scaffold_444-1510915933:152511..153045TCONS_00065779-exon-scaffold_444-1510915933:152511..153045Clytia hemisphaericaexon
TCONS_00065779-exon-scaffold_444-1575043694:152511..153045TCONS_00065779-exon-scaffold_444-1575043694:152511..153045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:152511..153045 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.268112	0	0.146671	0.520252	0.262359	0.186162	0.412389	1.28038	0.247006	0	1.13067	0.315033	0.610499	0.356974	0.14057	0.3013	0.192165	0.246327	0.130085	1.61574	1.13912	0.270654	0.613053	0	0.678274	0	0	0	0.40435
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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