TCONS_00065776 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065776
Unique NameTCONS_00065776
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065776 ID=TCONS_00065776|Name=TCONS_00065776|organism=Clytia hemisphaerica|type=transcript|length=348bp
cttaagacttaagaccttagatTCTCAGAATCTACAAAATCTAATTTGCT
TCAATTAGGCTTGGAATGCAGCCTAGAAGTCACCAAACTGATTCAATAAT
GAAGTATCCAATGAAAGAAAGAGGAAGTACTAAAAAAACAATTCCCACCC
GAACTTTTGAATTCTGAAAACGttgaaatacactaaaatctcaatatatt
tcgaccatgattgtagatatcattttttagatattgtttttgaatgaaaa
gtaTGTAAATTTTATATCATCCTTGATTTTTGtgtaaattatttaaaaaa
tgttataattaagattgtaaatttattttgagGTAATTAAAAGGTTAA
Run BLAST on NCBI

transcript from alignment at scaffold_444:54370..54717

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065776 ID=TCONS_00065776|Name=TCONS_00065776|organism=Clytia hemisphaerica|type=transcript|length=348bp|location=Sequence derived from alignment at scaffold_444:54370..54717 (Clytia hemisphaerica)
TTAACCTTTTAATTACctcaaaataaatttacaatcttaattataacatt
ttttaaataatttacaCAAAAATCAAGGATGATATAAAATTTACAtactt
ttcattcaaaaacaatatctaaaaaatgatatctacaatcatggtcgaaa
tatattgagattttagtgtatttcaaCGTTTTCAGAATTCAAAAGTTCGG
GTGGGAATTGTTTTTTTAGTACTTCCTCTTTCTTTCATTGGATACTTCAT
TATTGAATCAGTTTGGTGACTTCTAGGCTGCATTCCAAGCCTAATTGAAG
CAAATTAGATTTTGTAGATTCTGAGAatctaaggtcttaagtcttaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041208XLOC_041208Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065776-exon-scaffold_444-1491911889:54370..54717TCONS_00065776-exon-scaffold_444-1491911889:54370..54717Clytia hemisphaericaexon
TCONS_00065776-exon-scaffold_444-1510915933:54370..54717TCONS_00065776-exon-scaffold_444-1510915933:54370..54717Clytia hemisphaericaexon
TCONS_00065776-exon-scaffold_444-1575043694:54370..54717TCONS_00065776-exon-scaffold_444-1575043694:54370..54717Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:54370..54717 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.381415	0	2.68264	1.90393	1.78479	0.704514	0.442194	0.79924	0.517175	0	0.3465	0.359479	0.307912	0.316716	0	0.196388	0.860415	0	0	1.08332	0.305043	0	0.284602	0.244569	0	0.575563	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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