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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065767 ID=TCONS_00065767|Name=TCONS_00065767|organism=Clytia hemisphaerica|type=transcript|length=1599bp
ATCGAATACAGTATAGTCTTTCCGGAtaacctgttatacgtatatcTTGT
CAATATACCTTTTTATACTCGCGGGCGTCACACTTACTTCCCGCCCATCC
AGAAAGAAGCTTGCGCCTTCAGTGGTCTCCAGTctctttttgagtttcaa
aagacgcggaaaaacaacaaagagtCTTCTTGAATTTTGGCGGccaacaa
gatggcggacgacTAACCTTCTGAAGTATAGCTGAATTTCTATAGCCAAG
GATAACAGAATCCATCATCAAGTTAAgtataaatttttctttattattac
tTTGTAACTTTAGTTTGCTTTTGAAGCCAGCAGGAAGTTTTGAGAGGAAT
TTTAAGTATAATTTGATAGTGGCTTTTTGACTTTAGCTGAGTGAAGTTTA
TTCATATAAGGATATAACTTGACGAAATTAAACCGTTAGAGtatttttta
catttctttgattgttttttgtgtttttaaagttaaaatattATGATGGC
TCAGCTTTAAACTTGCAACCTTTTGCATCATCAGTTAGTGTGTTATCTTA
GTGCTTTTAGTCTTACTAATATATTCATTGTACTGGCNATACACttcttt
gattgttttttttgtgtttttaaagttaaaatattATGATGGCTCAGCTT
TAAACTTGCAACCTTTTGCATCATCAGTTAGTGTGTTATCTTAGTGCTTT
TAGTCTTACTAATATATTCATTGTACTGCCATTATAAGAGgtaaaaattt
attgaaaaatctaTTAAGTGGTTCATTTTTCTCGATTGTAGTCAAATAAA
GTTGTTTAATGTTCTCttggtttggtgtttttgtaaacattaaGGTCTTG
TTCCACTCAGCTTTTTNGCATTATAAGAGgtaaaaatttattgaaaaatc
taTGAAGTGGTTAATTTTTCTCGATTGTAGTCAAATAAAGTTGTTTAATG
TTCTCttggtttggtgtttttgtaaacattaaGGTCTTGTTCCACTCAGC
TTTTTTGAGCCGCCGAACAACGCGCACAgcttaattattgcataaattaa
gcTGTCAAAGCTATTCGCTTTGAACGCAAtgagcttttttgaaagttgaa
aattttcaactttgtgCGCAAAGCTGTATATACaactcttttatttttat
tttttggccaaCCGATCAgaatggataattttttttttgagtgacgtttg
caaaaataataaacaaaagtATGAAATNCGCTTTGAAGGCAATGAGCTTT
TTCgaaggttgaaaattttcaactttgtgCGCAAAGCTGTATATACagct
cttttatttttattttttggccaaCCGATCAgaatggataattttttttt
tgagtgacgtttgcaaaaataataaacaaaagtATGAAATCAAAAAGTGC
TGCACCTGTGACATTTCTTCTAAATGAGTGGAAGGATAAAAGCGTCCAGC
GTTCAAAGCGCAAAAGCTGAGTGGAACACGACCTTTATGAAATTCTTCGA
ACAGCAAGCTTATTAAACAGAATTTTCTGAAGTCTTCATCAAAGCAAATG
CTGCATGCAATAACCACTGGATATTTATTACAAGGAGGTTTACTTTCAG Run BLAST on NCBI transcript from alignment at scaffold_444:158755..161572- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065767 ID=TCONS_00065767|Name=TCONS_00065767|organism=Clytia hemisphaerica|type=transcript|length=2818bp|location=Sequence derived from alignment at scaffold_444:158755..161572- (Clytia hemisphaerica)
ATCGAATACAGTATAGTCTTTCCGGATAACCTGTTATACGTATATCTTGT
CAATATACCTTTTTATACTCGCGGGCGTCACACTTACTTCCCGCCCATCC
AGAAAGAAGCTTGCGCCTTCAGTGGTCTCCAGTCTCTTTTTGAGTTTCAA
AAGACGCGGAAAAACAACAAAGAGTCTTCTTGAATTTTGGCGGCCAACAA
GATGGCGGACGACTAACCTTCTGAAGTATAGCTGAATTTCTATAGCCAAG
GATAACAGAATCCATCATCAAGTTAAGTATAAATTTTTCTTTATTATTAC
TTTGTAACTTTAGTTTGCTTTTGAAGCCAGCAGGAAGTTTTGAGAGGAAT
TTTAAGTATAATTTGATAGTGGCTTTTTGACTTTAGCTGAGTGAAGTTTA
TTCATATAAGGATATAACTTGACGAAATTAAACCGTTAGAGTATTTTTTA
CATTTCTTTGATTGTTTTTTGTGTTTTTAAAGTTAAAATATTATGATGGC
TCAGCTTTAAACTTGCAACCTTTTGCATCATCAGTTAGTGTGTTATCTTA
GTGCTTTTAGTCTTACTAATATATTCATTGTACTGGCNATACACTTCTTT
GATTGTTTTTTTTGTGTTTTTAAAGTTAAAATATTATGATGGCTCAGCTT
TAAACTTGCAACCTTTTGCATCATCAGTTAGTGTGTTATCTTAGTGCTTT
TAGTCTTACTAATATATTCATTGTACTGCCATTATAAGAGGTAAAAATTT
ATTGAAAAATCTATTAAGTGGTTCATTTTTCTCGATTGTAGTCAAATAAA
GTTGTTTAATGTTCTCTTGGTTTGGTGTTTTTGTAAACATTAAGGTCTTG
TTCCACTCAGCTTTTTNGCATTATAAGAGGTAAAAATTTATTGAAAAATC
TATGAAGTGGTTAATTTTTCTCGATTGTAGTCAAATAAAGTTGTTTAATG
TTCTCTTGGTTTGGTGTTTTTGTAAACATTAAGGTCTTGTTCCACTCAGC
TTTTTTGAGCCGCCGAACAACGCGCACAGCTTAATTATTGCATAAATTAA
GCTGTCAAAGCTATTCGCTTTGAACGCAATGAGCTTTTTTGAAAGTTGAA
AATTTTCAACTTTGTGCGCAAAGCTGTATATACAACTCTTTTATTTTTAT
TTTTTGGCCAACCGATCAGAATGGATAATTTTTTTTTTGAGTGACGTTTG
CAAAAATAATAAACAAAAGTATGAAATNCGCTTTGAAGGCAATGAGCTTT
TTCGAAGGTTGAAAATTTTCAACTTTGTGCGCAAAGCTGTATATACAGCT
CTTTTATTTTTATTTTTTGGCCAACCGATCAGAATGGATAATTTTTTTTT
TGAGTGACGTTTGCAAAAATAATAAACAAAAGTATGAAATCAAAAAGTGC
TGCACCTGTGACATTTCTTCTAAATGAGTGGAAGGATAAAAGCGTCCAGC
GTTCAAAGCGCAAAAGCTGAGTGGAACACGACCTTTATGAAATTCTTCGA
ACAGCAAGCTTATTAAACAGAATTTTCTGAAGTCTTGTAAGTAGCTGCTA
CGTTAACGATTNTGATAAAAGCGTCCAGCGTTCAAAGCGCAAAAGCTGAG
TGGAACACGACCTTTATGAAATTCTTCGAACAGCAAGCTTATTAAACAGA
ACTTTCTGAAGTCTTGTAAGTAGCTGCTACGTTAACGATTGATATTTTGT
TCTGCTTCAACACGTACATATTTTTTATGCATCCATTATCGGCCATTGGC
TATTATCTTTTAATGAATATTTGCTTCTTGATAAAAAAAATCATTTAACT
TCAAGCAAGGAAAGTTTATGAACAACTTTTCTAATATATATTATATATAT
ATATATTTGACAGTTAAACCAAAAATTTGGTTTACAGTTACTGGCCCTAT
TTTGGTTCTTTATATTTTAAACATTGTAACATCTGGCATATGTGTAGTCA
TCTAGCATGCCAAACACATATCAGCATTAGCCATTCAATTAGACTGTCAA
AATGTGGATGGTACTTTGTTTAAAAACTAAAGGACAAGCTTAAATTGTAA
TAACCGAATTGATAAAAAATCTTGATAGCACTTTTATATCAGGTGTGCAT
GCTGTTAGTCATTTTACATGCCAAAACAGCATCATCAGTCAAAACATTCT
AAACCATGTTTAAACTGTACAAATCATGATGAATTGGACTATCATTTTTT
TGTATTGTTTTGTTATTACTTTCTATAGCTCTTTCAAAAATACTACTAGC
TTGTGTACTCAACAAAATAGTTTACAAATTAATAAGATAATAAATATGTA
TTGTTTGAGAAAAGTTAACTTTTCAAAACAAAAAATAGTCGAATCCAGCT
ATCTTAAAGTTTAAATTTTTTTGTTGGTCTTAGCTATTCTGTTTTAGACA
GCTTTTGAAGTATGATCTCTCTCACAATGAAGTGGTGAGGCAAGTTTTAT
TGTCGTACTCATTTTCAAGTTTCGTAATAATATGGGTTACTTATAATAGT
CGAAGTGTTTTTCCATCAACCTTAATCATGCAACATTCCTCCTTGTGGTA
CATATTACTTCATATTGAACATTGTCTTTGAAGAGTGAGATGTAAAAATT
CAAAGTTTATTATTCATCAATGAGATCTCTTCATGTATGTCTATCTTTCT
TCAGTGCAATGACTTTTTACAATGAAATTTTCAAATCTGTCTTGAATTTT
TTTTGTCAAGCCCGATATTAGAGATGTTAAATTCCTTTTCTTCTTTTTCT
TCTAGCATCAAAGCAAATGCTGCATGCAATAACCACTGGATATTTATTAC
AAGGAGGTTTACTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065767-exon-scaffold_444-1575043694:160037..161572 | TCONS_00065767-exon-scaffold_444-1575043694:160037..161572 | Clytia hemisphaerica | exon |
| TCONS_00065767-exon-scaffold_444-1575043694:158755..158817 | TCONS_00065767-exon-scaffold_444-1575043694:158755..158817 | Clytia hemisphaerica | exon |
| TCONS_00065767-exon-scaffold_444-1510915933:160037..161572 | TCONS_00065767-exon-scaffold_444-1510915933:160037..161572 | Clytia hemisphaerica | exon |
| TCONS_00065767-exon-scaffold_444-1510915933:158755..158817 | TCONS_00065767-exon-scaffold_444-1510915933:158755..158817 | Clytia hemisphaerica | exon |
| TCONS_00065767-exon-scaffold_444-1491911889:160037..161572 | TCONS_00065767-exon-scaffold_444-1491911889:160037..161572 | Clytia hemisphaerica | exon |
| TCONS_00065767-exon-scaffold_444-1491911889:158755..158817 | TCONS_00065767-exon-scaffold_444-1491911889:158755..158817 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_444 | supercontig | scaffold_444:158755..161572 - |
Blast
The following BLAST results are available for this feature:
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