TCONS_00065766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065766
Unique NameTCONS_00065766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065766 ID=TCONS_00065766|Name=TCONS_00065766|organism=Clytia hemisphaerica|type=transcript|length=229bp
GAAGCTTGCGCCTTCAGTGGTCTCCAGTctctttttgagtttcaaaagac
gcggaaaaacaacaaagagtCTTCTTGAATTTTGGCGGccaacaagatgg
cggacgacTAACCTTCTGAAGTATAGCTGAATTTCTATAGCCAAGGATAA
CAGAATCCATCATCAACATCAAAGCAAATGCTGCATGCAATAACCACTGG
ATATTTATTACAAGGAGGTTTACTTTCAG
Run BLAST on NCBI

transcript from alignment at scaffold_444:158755..161467-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065766 ID=TCONS_00065766|Name=TCONS_00065766|organism=Clytia hemisphaerica|type=transcript|length=2713bp|location=Sequence derived from alignment at scaffold_444:158755..161467- (Clytia hemisphaerica)
GAAGCTTGCGCCTTCAGTGGTCTCCAGTCTCTTTTTGAGTTTCAAAAGAC
GCGGAAAAACAACAAAGAGTCTTCTTGAATTTTGGCGGCCAACAAGATGG
CGGACGACTAACCTTCTGAAGTATAGCTGAATTTCTATAGCCAAGGATAA
CAGAATCCATCATCAAGTTAAGTATAAATTTTTCTTTATTATTACTTTGT
AACTTTAGTTTGCTTTTGAAGCCAGCAGGAAGTTTTGAGAGGAATTTTAA
GTATAATTTGATAGTGGCTTTTTGACTTTAGCTGAGTGAAGTTTATTCAT
ATAAGGATATAACTTGACGAAATTAAACCGTTAGAGTATTTTTTACATTT
CTTTGATTGTTTTTTGTGTTTTTAAAGTTAAAATATTATGATGGCTCAGC
TTTAAACTTGCAACCTTTTGCATCATCAGTTAGTGTGTTATCTTAGTGCT
TTTAGTCTTACTAATATATTCATTGTACTGGCNATACACTTCTTTGATTG
TTTTTTTTGTGTTTTTAAAGTTAAAATATTATGATGGCTCAGCTTTAAAC
TTGCAACCTTTTGCATCATCAGTTAGTGTGTTATCTTAGTGCTTTTAGTC
TTACTAATATATTCATTGTACTGCCATTATAAGAGGTAAAAATTTATTGA
AAAATCTATTAAGTGGTTCATTTTTCTCGATTGTAGTCAAATAAAGTTGT
TTAATGTTCTCTTGGTTTGGTGTTTTTGTAAACATTAAGGTCTTGTTCCA
CTCAGCTTTTTNGCATTATAAGAGGTAAAAATTTATTGAAAAATCTATGA
AGTGGTTAATTTTTCTCGATTGTAGTCAAATAAAGTTGTTTAATGTTCTC
TTGGTTTGGTGTTTTTGTAAACATTAAGGTCTTGTTCCACTCAGCTTTTT
TGAGCCGCCGAACAACGCGCACAGCTTAATTATTGCATAAATTAAGCTGT
CAAAGCTATTCGCTTTGAACGCAATGAGCTTTTTTGAAAGTTGAAAATTT
TCAACTTTGTGCGCAAAGCTGTATATACAACTCTTTTATTTTTATTTTTT
GGCCAACCGATCAGAATGGATAATTTTTTTTTTGAGTGACGTTTGCAAAA
ATAATAAACAAAAGTATGAAATNCGCTTTGAAGGCAATGAGCTTTTTCGA
AGGTTGAAAATTTTCAACTTTGTGCGCAAAGCTGTATATACAGCTCTTTT
ATTTTTATTTTTTGGCCAACCGATCAGAATGGATAATTTTTTTTTTGAGT
GACGTTTGCAAAAATAATAAACAAAAGTATGAAATCAAAAAGTGCTGCAC
CTGTGACATTTCTTCTAAATGAGTGGAAGGATAAAAGCGTCCAGCGTTCA
AAGCGCAAAAGCTGAGTGGAACACGACCTTTATGAAATTCTTCGAACAGC
AAGCTTATTAAACAGAATTTTCTGAAGTCTTGTAAGTAGCTGCTACGTTA
ACGATTNTGATAAAAGCGTCCAGCGTTCAAAGCGCAAAAGCTGAGTGGAA
CACGACCTTTATGAAATTCTTCGAACAGCAAGCTTATTAAACAGAACTTT
CTGAAGTCTTGTAAGTAGCTGCTACGTTAACGATTGATATTTTGTTCTGC
TTCAACACGTACATATTTTTTATGCATCCATTATCGGCCATTGGCTATTA
TCTTTTAATGAATATTTGCTTCTTGATAAAAAAAATCATTTAACTTCAAG
CAAGGAAAGTTTATGAACAACTTTTCTAATATATATTATATATATATATA
TTTGACAGTTAAACCAAAAATTTGGTTTACAGTTACTGGCCCTATTTTGG
TTCTTTATATTTTAAACATTGTAACATCTGGCATATGTGTAGTCATCTAG
CATGCCAAACACATATCAGCATTAGCCATTCAATTAGACTGTCAAAATGT
GGATGGTACTTTGTTTAAAAACTAAAGGACAAGCTTAAATTGTAATAACC
GAATTGATAAAAAATCTTGATAGCACTTTTATATCAGGTGTGCATGCTGT
TAGTCATTTTACATGCCAAAACAGCATCATCAGTCAAAACATTCTAAACC
ATGTTTAAACTGTACAAATCATGATGAATTGGACTATCATTTTTTTGTAT
TGTTTTGTTATTACTTTCTATAGCTCTTTCAAAAATACTACTAGCTTGTG
TACTCAACAAAATAGTTTACAAATTAATAAGATAATAAATATGTATTGTT
TGAGAAAAGTTAACTTTTCAAAACAAAAAATAGTCGAATCCAGCTATCTT
AAAGTTTAAATTTTTTTGTTGGTCTTAGCTATTCTGTTTTAGACAGCTTT
TGAAGTATGATCTCTCTCACAATGAAGTGGTGAGGCAAGTTTTATTGTCG
TACTCATTTTCAAGTTTCGTAATAATATGGGTTACTTATAATAGTCGAAG
TGTTTTTCCATCAACCTTAATCATGCAACATTCCTCCTTGTGGTACATAT
TACTTCATATTGAACATTGTCTTTGAAGAGTGAGATGTAAAAATTCAAAG
TTTATTATTCATCAATGAGATCTCTTCATGTATGTCTATCTTTCTTCAGT
GCAATGACTTTTTACAATGAAATTTTCAAATCTGTCTTGAATTTTTTTTG
TCAAGCCCGATATTAGAGATGTTAAATTCCTTTTCTTCTTTTTCTTCTAG
CATCAAAGCAAATGCTGCATGCAATAACCACTGGATATTTATTACAAGGA
GGTTTACTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041201XLOC_041201Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065766-exon-scaffold_444-1575043694:161302..161467TCONS_00065766-exon-scaffold_444-1575043694:161302..161467Clytia hemisphaericaexon
TCONS_00065766-exon-scaffold_444-1575043694:158755..158817TCONS_00065766-exon-scaffold_444-1575043694:158755..158817Clytia hemisphaericaexon
TCONS_00065766-exon-scaffold_444-1510915933:161302..161467TCONS_00065766-exon-scaffold_444-1510915933:161302..161467Clytia hemisphaericaexon
TCONS_00065766-exon-scaffold_444-1510915933:158755..158817TCONS_00065766-exon-scaffold_444-1510915933:158755..158817Clytia hemisphaericaexon
TCONS_00065766-exon-scaffold_444-1491911889:161302..161467TCONS_00065766-exon-scaffold_444-1491911889:161302..161467Clytia hemisphaericaexon
TCONS_00065766-exon-scaffold_444-1491911889:158755..158817TCONS_00065766-exon-scaffold_444-1491911889:158755..158817Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:158755..161467 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.04661	0	0	0	0.424887	0	0	0	0	0	0	0.254272	0	0	0	0	0	0	0	0	0	0	0.476933	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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