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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065756 ID=TCONS_00065756|Name=TCONS_00065756|organism=Clytia hemisphaerica|type=transcript|length=1253bp
GGTACGATCGGAGGAACACGTTGGCATCAAGGGGTGATCACTGAAGTGCG
ACAAGATGAATACGGAAGAATACTATATGATGGAAAACACACAAAGTCCG
CACAAGATGGGAAATGGGTTACTTATAGAGGTTATTCTCCCAACTTCTAT
GGCGTTGAAAGAGAAGATTTGAGAGTGGGTCCAAACATGTTTGAAGTTCT
GAACAGTCAATCAATACAACCAGTTCATGAATCGACACAGCCATCTGCAC
CACCTTACTCCACCGAAGCACCGCCCTCTTATGATGAAGTGGTTGAAAGG
TCATCCGGTGGCACTTTTTCATCTCCGCCACTTAGTGACCCAGTTCCGCC
CTATAGTCCACCTTCTATGTCAGGGTCTAGTAATGTAAGCCAGCTTTTAA
AAGATATCGATCCGTTTGTTGGCCTGATTGAGCGCTGCGTCAATCGAACA
GAAAACAATGCAATAAACGCAGATATATTCATATCATACATTTGGAATGA
TTCTTTGGCTGCTAAAGAGCTTGAACAAGTAACGAACTTTAAAGGCACTG
CATGGTCCGATCCTAGATGTCTAGCCCGTGATTTAGCCTCAGATAAACAC
AAGATATGGTTGGACATAGATAGTATTACAAATTCCACGCAAACTATATT
TGAGCAACACGCTAAAGCGATACGTAATTGCAAAATATTCATACCATTTA
TCAGTGACGATTATTCGGCCAGCATGTTTTGTAGGATGCAGTTCCAATTC
GCTTGTGGTTTTCAAGACAAAAGGATAATTCCTATCATTGTTGGTGAAGG
AAGTGATTGGAAATCTTCGGTGATTGGAATTTCATTGGAGAATAATGGCG
AACGATTTAAACCAATAATAAACATGCAAAACGTTCACAATGAAGAAACA
TATCATAAAATCTTATATGAAATTTTATCTGCTGTTGGGTCGTAGTACGT
TTGATTGAAAGTACATCCTCTTACGAAAATGCACCTCTCAGTTTAGGCGT
ATTTTGAATCAATGAAGATATACTTTGATCATATTATTCTCATGTATCTT
TATCAAAGTGTGCAAATTACAGTGTAGAACTAccctttttcgaagatttt
atttttagaggATTTTGACCTTATTTTCTCCACATTGATTGCATGTATGT
GTTTGTATGGCATTGAACTTAATCTACAATtatagacaaaatatttgaga
cgaAGGGGATTTTTCTGCGAAATTTTAAATATCACaatgatttttaagcg
tgt Run BLAST on NCBI protein sequence of TCONS_00065756-protein >TCONS_00065756-protein ID=TCONS_00065756-protein|Name=TCONS_00065756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
GTIGGTRWHQGVITEVRQDEYGRILYDGKHTKSAQDGKWVTYRGYSPNFY
GVEREDLRVGPNMFEVLNSQSIQPVHESTQPSAPPYSTEAPPSYDEVVER
SSGGTFSSPPLSDPVPPYSPPSMSGSSNVSQLLKDIDPFVGLIERCVNRT
ENNAINADIFISYIWNDSLAAKELEQVTNFKGTAWSDPRCLARDLASDKH
KIWLDIDSITNSTQTIFEQHAKAIRNCKIFIPFISDDYSASMFCRMQFQF
ACGFQDKRIIPIIVGEGSDWKSSVIGISLENNGERFKPIINMQNVHNEET
YHKILYEILSAVGS Run BLAST on NCBI transcript from alignment at scaffold_444:54785..58015- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065756 ID=TCONS_00065756|Name=TCONS_00065756|organism=Clytia hemisphaerica|type=transcript|length=3231bp|location=Sequence derived from alignment at scaffold_444:54785..58015- (Clytia hemisphaerica)
GGTACGATCGGAGGAACACGTTGGCATCAAGGGGTGATCACTGAAGTGCG
ACAAGATGAATACGGAAGAATACTATATGATGGAAAACACACAAAGTCCG
CACAAGATGGGAAATGGGTTACTTATAGAGGTAGGTACTACAGATATCTT
ATTTAAAACACTAGATAAAGCTATTCTGTATTTCCCAAGCAACTGCAGGT
TAAGCAAAAAAAGCGCCAATCTTTGCTGAGAGTAGATCACAGTAGCAACC
TTTGTTTTCAATCTTGACGTTTTTTGACACTGCACAAATTTTAAGGATCA
CGCAAGCTAAATTGTGACGTCACTTCGTTTAAAATGATGGAATATTTTCC
TTTGCAGCTAGAATGGAGAAGCTCCTTCTAGGACCTTTCATGTCAAAAAA
GTCCCGAAAATCCTGAAAACACATTGTCTGAAACACTTTTTTTTGAACCT
TTTATGCTTTTTTGAGGTGTTTTTGGCAAAAACTCTTTCCCAAAAACACC
TCGCCTCTCGAGGTGATGTGACGCATTTCCTGTGTTCCTGGGATTTCCAT
AAACCAACTATCAATTTTCTCCACAAAATCCAAGCCAAATTGCATTACCT
GAAACACTGGCAAGTTTCTGAACCATTCAGTGTTTTCTCTGGTGTTCAAG
AGGATTTTGAAGCTCTTGCAGTATCCTGTCTGAACCAATCAGTTATAAAA
ATCGGGTTGAAAATCGGATTATAAAATCGGGGAAAATCCGGAAATTTAGC
CAGTCGGAACTTCTTTTAACAATCGGCTTCGACAGGACTTTCGGTGTTTT
TAAGAACTTTGAAGAGTGAACCATTCGTGCTCAAAAGTGTTTTATGCAAA
CAATGGTTCAGACTCTGAGATAAGATAGCTGTGGTGAACTCAGTGTCTTT
CTTTATGTCTTGAAATAATAGTGACAAATATCAACAATCCTTTGTCACTT
TGTGAAGTTCATACAAGGATTCAAATGATCAGCCCTTTAAAAAAAGTTCA
TTTCACTTTCACGCCACTTTCCAAACACTGTTTCAAAAAATAACAAATAA
TAATTTATTTCATTCAGAGCACTACAATCCTTGCAAAACATCATTCTAAA
GATTTAAAACTGAAAATGAAGATTAAAAATGAAGAAGAAGAAAACTTTTT
TCTCTTTAGTGCTATAAACTTCATTTTTAGTACAGAAGTACTTCGAAGCT
TCCGAATTTCAGAAATACAATTATCTTTCACAAAAAATTTATTTCGTTAA
AGGTCTTAGAGAATTGCAGGTTGGAGTTATCAAACTTCATAAAGCAGTGT
TTTTCGACTCCAGTGAGCTAAATCTTTTCGATTACTAGCTAATACAAAGG
TGTATAAAACAATATTCTAACATATNCAAAATTTTGATACTACTTTTACT
TTTTCTATTACTAATTAATACAAGGATGAGACAACATTCTAGCATATTGT
TATGTACAGGTTATTCTCCCAACTTCTATGGCGTTGAAAGAGAAGATTTG
AGAGTGGGTCCAAACATGTTTGAAGTTCTGAACAGTCAATCAATACAACC
AGTTCATGAATCGACACAGCCATCTGCACCACCTTACTCCACCGAAGCAC
CGCCCTCTTATGATGAAGTGGTTGAAAGGTCATCCGGTGGCACTTTTTCA
TCTCCGCCACTTAGTGACCCAGTTCCGCCCTATAGTCCACCTTCTATGTC
AGGGTCTAGTAATGTAAGCCAGCTTTTAAAAGATATCGATCCGTTTGTTG
GCCTGATTGAGCGCTGCGTCAATCGAACAGAAAACAATGCAATAAACGCA
GGTAAGAAAACCCAACATAAATTGCTTCACACTTCACCATAGACTCTTTT
TAATTCCAACCTGCGACATCGGAAGACCATGATTTAGGAGAAACGTATTA
TTTTCCTTTCTCGAAAGCTCCTCACTGATACTGATACTGTATAATAAATG
ATCGATACATCTATTCTTTGCAATATTTAAAACAGACAATTTGAAAGAAG
TAATGATTATTTGAATACCGTATTACTTCAAATAAACACCCGGAGCGTTT
ATTAATTTTTTTCGATTTTAGGAGGGGTGATTGTTCGAGGAGGCCATTTA
AAAGAAGGGGGCGTTTATTGAATTATTTTAGTCTAAAGTCGAATATTTAG
AGCAAATAGACCCTCTGTTTTAGTTCTTTATCAATGATTAAAATTGCATC
GAAAACTGCTCTGGTTACAAGAAATGATTAAAATCTTCCTTTTCAAACCC
AATCAACGCTGGTATTGAAGTATAAAAGTCACAAGTTTGTATTCGCAGGG
GGCGTTTATTTGAGGGGGCTTTTTTTAGATAATTTTCCTTTGAGGTAGGG
CGTTTATTCGAGGGGGCGTTTAAAATAACGGGGTGTTTATTCGAAGTAAT
ACGGTAAGTTTGTCAAAAAAAAAAGATCCAATCGTAATTTCTCCTTTTAG
ATATATTCATATCATACATTTGGAATGATTCTTTGGCTGCTAAAGAGCTT
GAACAAGTAACGAACTTTAAAGGCACTGCATGGTCCGATCCTAGATGTCT
AGCCCGTGATTTAGCCTCAGATAAACACAAGATATGGTTGGACATAGATA
GTATTACAAATTCCACGCAAACTATATTTGAGCAACACGCTAAAGCGATA
CGTAATTGCAAAATATTCATACCATTTATCAGTGACGATTATTCGGCCAG
CATGTTTTGTAGGATGCAGTTCCAATTCGCTTGTGGTTTTCAAGACAAAA
GGATAATTCCTATCATTGTTGGTGAAGGAAGTGATTGGAAATCTTCGGTG
ATTGGAATTTCATTGGAGAATAATGGCGAACGATTTAAACCAATAATAAA
CATGCAAAACGTTCACAATGAAGAAACATATCATAAAATCTTATATGAAA
TTTTATCTGCTGTTGGGTCGTAGTACGTTTGATTGAAAGTACATCCTCTT
ACGAAAATGCACCTCTCAGTTTAGGCGTATTTTGAATCAATGAAGATATA
CTTTGATCATATTATTCTCATGTATCTTTATCAAAGTGTGCAAATTACAG
TGTAGAACTACCCTTTTTCGAAGATTTTATTTTTAGAGGATTTTGACCTT
ATTTTCTCCACATTGATTGCATGTATGTGTTTGTATGGCATTGAACTTAA
TCTACAATTATAGACAAAATATTTGAGACGAAGGGGATTTTTCTGCGAAA
TTTTAAATATCACAATGATTTTTAAGCGTGT Coding sequence (CDS) from alignment at scaffold_444:54785..58015- >TCONS_00065756 ID=TCONS_00065756|Name=TCONS_00065756|organism=Clytia hemisphaerica|type=CDS|length=2835bp|location=Sequence derived from alignment at scaffold_444:54785..58015- (Clytia hemisphaerica)
ATATATTCATATCATACATTTGGAATGATTCTTTGGCTGCTAAAGAGCTT
GAACAAGTAACGAACTTTAAAGGCACTGCATGGTCCGATCCTAGATGTCT
AGCCCGTGATTTAGCCTCAGATAAACACAAGATATGGTTGGACATAGATA
GTATTACAAATTCCACGCAAACTATATTTGAGCAACACGCTAAAGCGATA
CGTAATTGCAAAATATTCATACCATTTATCAGTGACGATTATTCGGCCAG
CATGTTTTGTAGGATGCAGTTCCAATTCGCTTGTGGTTTTCAAGACAAAA
GGATAATTCCTATCATTGTTGGTGAAGGAAGTGATTGGAAATCTTCGGTG
ATTGGAATTTCATTGGAGAATAATGGCGAACGATTTAAACCAATAATAAA
CATGCAAAACGTTCACAATGAAGAAACATATCATAAAATCTTATATGAAA
TTTTATCTGCTGTTGGGTCGTAGGTTATTCTCCCAACTTCTATGGCGTTG
AAAGAGAAGATTTGAGAGTGGGTCCAAACATGTTTGAAGTTCTGAACAGT
CAATCAATACAACCAGTTCATGAATCGACACAGCCATCTGCACCACCTTA
CTCCACCGAAGCACCGCCCTCTTATGATGAAGTGGTTGAAAGGTCATCCG
GTGGCACTTTTTCATCTCCGCCACTTAGTGACCCAGTTCCGCCCTATAGT
CCACCTTCTATGTCAGGGTCTAGTAATGTAAGCCAGCTTTTAAAAGATAT
CGATCCGTTTGTTGGCCTGATTGAGCGCTGCGTCAATCGAACAGAAAACA
ATGCAATAAACGCAGGGTACGATCGGAGGAACACGTTGGCATCAAGGGGT
GATCACTGAAGTGCGACAAGATGAATACGGAAGAATACTATATGATGGAA
AACACACAAAGTCCGCACAAGATGGGAAATGGGTTACTTATAGAGATATA
TTCATATCATACATTTGGAATGATTCTTTGGCTGCTAAAGAGCTTGAACA
AGTAACGAACTTTAAAGGCACTGCATGGTCCGATCCTAGATGTCTAGCCC
GTGATTTAGCCTCAGATAAACACAAGATATGGTTGGACATAGATAGTATT
ACAAATTCCACGCAAACTATATTTGAGCAACACGCTAAAGCGATACGTAA
TTGCAAAATATTCATACCATTTATCAGTGACGATTATTCGGCCAGCATGT
TTTGTAGGATGCAGTTCCAATTCGCTTGTGGTTTTCAAGACAAAAGGATA
ATTCCTATCATTGTTGGTGAAGGAAGTGATTGGAAATCTTCGGTGATTGG
AATTTCATTGGAGAATAATGGCGAACGATTTAAACCAATAATAAACATGC
AAAACGTTCACAATGAAGAAACATATCATAAAATCTTATATGAAATTTTA
TCTGCTGTTGGGTCGTAGGTTATTCTCCCAACTTCTATGGCGTTGAAAGA
GAAGATTTGAGAGTGGGTCCAAACATGTTTGAAGTTCTGAACAGTCAATC
AATACAACCAGTTCATGAATCGACACAGCCATCTGCACCACCTTACTCCA
CCGAAGCACCGCCCTCTTATGATGAAGTGGTTGAAAGGTCATCCGGTGGC
ACTTTTTCATCTCCGCCACTTAGTGACCCAGTTCCGCCCTATAGTCCACC
TTCTATGTCAGGGTCTAGTAATGTAAGCCAGCTTTTAAAAGATATCGATC
CGTTTGTTGGCCTGATTGAGCGCTGCGTCAATCGAACAGAAAACAATGCA
ATAAACGCAGGGTACGATCGGAGGAACACGTTGGCATCAAGGGGTGATCA
CTGAAGTGCGACAAGATGAATACGGAAGAATACTATATGATGGAAAACAC
ACAAAGTCCGCACAAGATGGGAAATGGGTTACTTATAGAGATATATTCAT
ATCATACATTTGGAATGATTCTTTGGCTGCTAAAGAGCTTGAACAAGTAA
CGAACTTTAAAGGCACTGCATGGTCCGATCCTAGATGTCTAGCCCGTGAT
TTAGCCTCAGATAAACACAAGATATGGTTGGACATAGATAGTATTACAAA
TTCCACGCAAACTATATTTGAGCAACACGCTAAAGCGATACGTAATTGCA
AAATATTCATACCATTTATCAGTGACGATTATTCGGCCAGCATGTTTTGT
AGGATGCAGTTCCAATTCGCTTGTGGTTTTCAAGACAAAAGGATAATTCC
TATCATTGTTGGTGAAGGAAGTGATTGGAAATCTTCGGTGATTGGAATTT
CATTGGAGAATAATGGCGAACGATTTAAACCAATAATAAACATGCAAAAC
GTTCACAATGAAGAAACATATCATAAAATCTTATATGAAATTTTATCTGC
TGTTGGGTCGTAGGTTATTCTCCCAACTTCTATGGCGTTGAAAGAGAAGA
TTTGAGAGTGGGTCCAAACATGTTTGAAGTTCTGAACAGTCAATCAATAC
AACCAGTTCATGAATCGACACAGCCATCTGCACCACCTTACTCCACCGAA
GCACCGCCCTCTTATGATGAAGTGGTTGAAAGGTCATCCGGTGGCACTTT
TTCATCTCCGCCACTTAGTGACCCAGTTCCGCCCTATAGTCCACCTTCTA
TGTCAGGGTCTAGTAATGTAAGCCAGCTTTTAAAAGATATCGATCCGTTT
GTTGGCCTGATTGAGCGCTGCGTCAATCGAACAGAAAACAATGCAATAAA
CGCAGGGTACGATCGGAGGAACACGTTGGCATCAAGGGGTGATCACTGAA
GTGCGACAAGATGAATACGGAAGAATACTATATGATGGAAAACACACAAA
GTCCGCACAAGATGGGAAATGGGTTACTTATAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065756-exon-scaffold_444-1575043694:57886..58015 | TCONS_00065756-exon-scaffold_444-1575043694:57886..58015 | Clytia hemisphaerica | exon |
| TCONS_00065756-exon-scaffold_444-1575043694:56215..56556 | TCONS_00065756-exon-scaffold_444-1575043694:56215..56556 | Clytia hemisphaerica | exon |
| TCONS_00065756-exon-scaffold_444-1575043694:54785..55565 | TCONS_00065756-exon-scaffold_444-1575043694:54785..55565 | Clytia hemisphaerica | exon |
| TCONS_00065756-exon-scaffold_444-1510915933:57886..58015 | TCONS_00065756-exon-scaffold_444-1510915933:57886..58015 | Clytia hemisphaerica | exon |
| TCONS_00065756-exon-scaffold_444-1510915933:56215..56556 | TCONS_00065756-exon-scaffold_444-1510915933:56215..56556 | Clytia hemisphaerica | exon |
| TCONS_00065756-exon-scaffold_444-1510915933:54785..55565 | TCONS_00065756-exon-scaffold_444-1510915933:54785..55565 | Clytia hemisphaerica | exon |
| TCONS_00065756-exon-scaffold_444-1491911889:57886..58015 | TCONS_00065756-exon-scaffold_444-1491911889:57886..58015 | Clytia hemisphaerica | exon |
| TCONS_00065756-exon-scaffold_444-1491911889:56215..56556 | TCONS_00065756-exon-scaffold_444-1491911889:56215..56556 | Clytia hemisphaerica | exon |
| TCONS_00065756-exon-scaffold_444-1491911889:54785..55565 | TCONS_00065756-exon-scaffold_444-1491911889:54785..55565 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_444 | supercontig | scaffold_444:54785..58015 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000157 | TIR_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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