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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065754 ID=TCONS_00065754|Name=TCONS_00065754|organism=Clytia hemisphaerica|type=transcript|length=1986bp
ttctgtTCTTCTCAGCTTATAAGAAATATAAATTCAAACGGAATTCCAAA
CTGAATCGTTTTCCATtgatttttacaaataaaaatttatcataaaTTTT
CATTATTGCTCGACAAAGTAGCAGACTCTTCACAAGTTATGTCCTCATGG
AAATCGGATAGACTGCGACTCGACCTTgatttcaacatctggaatCAACC
CTTCATTTTGAATACTGCTCACGGATGAAGAAGCTGATTGTTTTGATGGT
TCTACATAAGATGCATACTGGTACGTTTTAGGTTGTAATTTTGTTGCATT
TGAACATGTCCCTTCTTGCTCAGTAGTATTAGAAGTTTGTTTCTCAGTTT
GTAGCgaagtttttttgtgttttattttttgtgatAGCCGCTTCGATTTC
TTTGTGGTTGTTGCAATATTtgtagaaacatgaaatttcgtTTTAGAAAG
TAATTTGCGTTTTTCACCAATAATTTCGCGATTTGTTTTAGAAGGTTTTT
CAGGTTTGCTGATAGTTGGTacattcttgaaatttttattttgtaaatgg
TTTGAAGTTCTTGACGTTTTTGAACTATCATCTTCTTTCCTTAGTTTTTG
TTCTTGAAGCCAAGCACGAATCTTCTCATTTTCAGATGGTATGCTATTCA
ACTTTTCAATTTGCTGTGAAGCTTTATTCTTATCTGAAATGTTTGTCACG
GGTAATACCCTTCCGCCAAAAATTGGAGTCATAGGTGATACCCTTGCGCC
AATAATTGGAGTCAAACTAGGTAACTTGGAAGTCGTATTTGGTAACATTT
TAAGTTGTGTTTCCTGAGAAAGTATTGTTTCGGCTTTCCTCTTTGATTGT
ATTTGTGGTACCTGGTGATGAGCGGATGATTTCTCGTTACTCGAAAAATG
AACGTCCTCCCTTACTTCATTCTCATCTAACTGTTTCGATTCATTTTGGA
AATCAATCGGTGAGTCTTTCAATGCAAATATTTCTGCAGTTGaatttgat
gaaacaatttccGATGGAAGAATATTGCCTTTTGATAAGCTTTTTGATTT
ATTCCGAACGCATGATAAATCGATTTGAAAACAAGGACTTGCACGATACA
ATGGACTTAAGGAAGAATACCGAGCATTTGTTTCTTTGAAGATTCTCAGA
AAATGAGCGCAAGGCATTCTGTtaaatttccaattttcacAATTGCATGA
TGGGAAAGTTCTCTGGTTTCCCAGGGTAACTGTATGTCCGGtattgtttg
attttgttgtttggGAATTGTCCATTATGCTTGCGCAATGAGACATCATG
AATAATGGTAGACCAAAGTTTTTTTCGAATGACGAATAGCGAGTTGCTGC
ACTCATGGCATCTTTGAACAACATTTCATTCTTCAAGACAtaactaaaaa
aattgaataaacgaGATTCTTTACGACAACTTCTAAACTCCTAAAAAAGG
CTCAATACTATTTCCCTGATTAGAAATTTTTACCCCTGATGACAGTTATG
TCAATATTAGTTTGAAACGAACTGTCATTATCATTCAGAGGCCAAACTGC
TTTATTCCGAtgagaaataatgaaaatagaTAGACAAGATGTACTTTAAA
CCACTAAAGTCTGGGTGCATAGCTCCTGTGAATTTTGGCTGTTTTCAACG
gaattatcaaaaattgttaatttttagAAGAACTTCATTCCTTTTTTGAG
AAGAGAGCAATCTATTTGAAAGGTCATAGATAAACGATATTAAATTTCTG
ATTCAAAGTGGTGAAATAGCTGAAGAATTGTTTCTTTTATTAGGAACAAG
GATACCTGTCCGAGTAGCGAGACTTTGGTTTCTCGTCCGTTAATTTCGCC
ATCAACATCATCAACCCTTTGGTGTCCTTCTTTGAGTAGGATTCGAGGAT
GTTTCTATAAAAGTGAACAGCAGAGCGAAGCCAGTCGTCTCGTAGAAAGA
ATATCAAATCCTTTGGTAAGCAACATTTCATCCATT Run BLAST on NCBI transcript from alignment at scaffold_444:188296..190314+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065754 ID=TCONS_00065754|Name=TCONS_00065754|organism=Clytia hemisphaerica|type=transcript|length=2019bp|location=Sequence derived from alignment at scaffold_444:188296..190314+ (Clytia hemisphaerica)
ttctgtTCTTCTCAGCTTATAAGAAATATAAATTCAAACGGAATTCCAAA
CTGAATCGTTTTCCATtgatttttacaaataaaaatttatcataaaTTTT
CATTATTGCTCGACAAAGTAGCAGACTCTTCACAAGTTATGTCCTCATGG
AAATCGGATAGACTGCGACTCGACCTTgatttcaacatctggaatCAACC
CTTCATTTTGAATACTGCTCACGGATGAAGAAGCTGATTGTTTTGATGGT
TCTACATAAGATGCATACTGGTACGTTTTAGGTTGTAATTTTGTTGCATT
TGAACATGTCCCTTCTTGCTCAGTAGTATTAGAAGTTTGTTTCTCAGTTT
GTAGCgaagtttttttgtgttttattttttgtgatAGCCGCTTCGATTTC
TTTGTGGTTGTTGCAATATTtgtagaaacatgaaatttcgtTTTAGAAAG
TAATTTGCGTTTTTCACCAATAATTTCGCGATTTGTTTTAGAAGGTTTTT
CAGGTTTGCTGATAGTTGGTacattcttgaaatttttattttgtaaatgg
TTTGAAGTTCTTGACGTTTTTGAACTATCATCTTCTTTCCTTAGTTTTTG
TTCTTGAAGCCAAGCACGAATCTTCTCATTTTCAGATGGTATGCTATTCA
ACTTTTCAATTTGCTGTGAAGCTTTATTCTTATCTGAAATGTTTGTCACG
GGTAATACCCTTCCGCCAAAAATTGGAGTCATAGGTGATACCCTTCCGCC
AAAAATTGGAGTCATAGGTGATACCCTTGCGCCAATAATTGGAGTCAAAC
TAGGTAACTTGGAAGTCGTATTTGGTAACATTTTAAGTTGTGTTTCCTGA
GAAAGTATTGTTTCGGCTTTCCTCTTTGATTGTATTTGTGGTACCTGGTG
ATGAGCGGATGATTTCTCGTTACTCGAAAAATGAACGTCCTCCCTTACTT
CATTCTCATCTAACTGTTTCGATTCATTTTGGAAATCAATCGGTGAGTCT
TTCAATGCAAATATTTCTGCAGTTGaatttgatgaaacaatttccGATGG
AAGAATATTGCCTTTTGATAAGCTTTTTGATTTATTCCGAACGCATGATA
AATCGATTTGAAAACAAGGACTTGCACGATACAATGGACTTAAGGAAGAA
TACCGAGCATTTGTTTCTTTGAAGATTCTCAGAAAATGAGCGCAAGGCAT
TCTGTtaaatttccaattttcacAATTGCATGATGGGAAAGTTCTCTGGT
TTCCCAGGGTAACTGTATGTCCGGtattgtttgattttgttgtttggGAA
TTGTCCATTATGCTTGCGCAATGAGACATCATGAATAATGGTAGACCAAA
GTTTTTTTCGAATGACGAATAGCGAGTTGCTGCACTCATGGCATCTTTGA
ACAACATTTCATTCTTCAAGACAtaactaaaaaaattgaataaacgaGAT
TCTTTACGACAACTTCTAAACTCCTAAAAAAGGCTCAATACTATTTCCCT
GATTAGAAATTTTTACCCCTGATGACAGTTATGTCAATATTAGTTTGAAA
CGAACTGTCATTATCATTCAGAGGCCAAACTGCTTTATTCCGAtgagaaa
taatgaaaatagaTAGACAAGATGTACTTTAAACCACTAAAGTCTGGGTG
CATAGCTCCTGTGAATTTTGGCTGTTTTCAACGgaattatcaaaaattgt
taatttttagAAGAACTTCATTCCTTTTTTGAGAAGAGAGCAATCTATTT
GAAAGGTCATAGATAAACGATATTAAATTTCTGATTCAAAGTGGTGAAAT
AGCTGAAGAATTGTTTCTTTTATTAGGAACAAGGATACCTGTCCGAGTAG
CGAGACTTTGGTTTCTCGTCCGTTAATTTCGCCATCAACATCATCAACCC
TTTGGTGTCCTTCTTTGAGTAGGATTCGAGGATGTTTCTATAAAAGTGAA
CAGCAGAGCGAAGCCAGTCGTCTCGTAGAAAGAATATCAAATCCTTTGGT
AAGCAACATTTCATCCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065754-exon-scaffold_444-1491911889:188296..189029 | TCONS_00065754-exon-scaffold_444-1491911889:188296..189029 | Clytia hemisphaerica | exon |
| TCONS_00065754-exon-scaffold_444-1510915933:188296..189029 | TCONS_00065754-exon-scaffold_444-1510915933:188296..189029 | Clytia hemisphaerica | exon |
| TCONS_00065754-exon-scaffold_444-1575043694:188296..189029 | TCONS_00065754-exon-scaffold_444-1575043694:188296..189029 | Clytia hemisphaerica | exon |
| TCONS_00065754-exon-scaffold_444-1491911889:189063..190314 | TCONS_00065754-exon-scaffold_444-1491911889:189063..190314 | Clytia hemisphaerica | exon |
| TCONS_00065754-exon-scaffold_444-1510915933:189063..190314 | TCONS_00065754-exon-scaffold_444-1510915933:189063..190314 | Clytia hemisphaerica | exon |
| TCONS_00065754-exon-scaffold_444-1575043694:189063..190314 | TCONS_00065754-exon-scaffold_444-1575043694:189063..190314 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_444 | supercontig | scaffold_444:188296..190314 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007527 | Znf_SWIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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