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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065749 ID=TCONS_00065749|Name=TCONS_00065749|organism=Clytia hemisphaerica|type=transcript|length=1789bp
CCATAATATAGGAATAGTAAATTATTGATCTGTAGATTGTAAAACTAACA
ATTCCCCGAAAATGTATCTGAATAGGTGTAGGGAATCTTTGAACGTTCAT
GAAAAGTATAAAAGGGGTATGAAAGTAAAGCCGAAATCAAAGCAAATTAT
TTACCGAGTTGTATATGGTGGCGACATACTGAAAGAAAACACTTCAAGAA
ACTAAATAAAAGCTTTACGGAGGTTAGAAGTACCTATCTTAACCAACTAC
CTGGTATATCACAAATCAAAGTTTCTTAGCTTCTGAGGAGGATGAAGGGC
TGTTTGGCAGCTTTTGCTTTTTGCTTGATTTCGGCCATTTTATCAGGCCA
ATCAGATGCTTTCGATTGGAAGAAAGCACTTGACGGTTTACGCGTGCTTG
GAGGGTTGAGGGACAATGGGGAGTTTGATCGAGGAGGTGGTAAAATGGTA
ACCTTTTCGTATAAAGAAACGATGCGTTTCGAGAAATATCTCCCACGTTT
GAAGTATCATGGTATCTGTTTTGATAAAACTACTGGCATCTTTGCTCAAT
CTTTGACCAATGGGAGAACTGGCAACGTCGACAAATGCTTGGAAGAGCTG
TTTCAAAAGTTAGCTCGCAAAGGGGAATTGTGAGCTGGCACTTTCATTTT
TCGAGATTTTCCATTTTTTTTGTAGTTTTATTGAAGTTCTCTGTATTGTA
GTGTCTTATTGAAGTTCTTTGCAAGAAAACTAAAGTGTGGCAGTAGCAGC
AAATTGATCGAGTAgacggaaaattcttattcgccttaaaaaacggattt
tcgtatattggggaaattttctttaaccaaataagaaaatatagcttttc
tcaatgttgactctttatttttttctgatttttagcacaatgatgcaaaa
tgacaatgcctaaaatgtgacagagcctcaattttcgaaaaaaagtatat
tttgacaaatttgggccaaaaactgcttaaaaatagggttttttgccgac
tttttttctttttttgttgactttttttcttttttgtcaactttttttct
ttttttgagaactttttttctttttttctttttttcaaaaaaaaggtttt
ttttttaatttaacttttcttTTCGAGACTGCTTTCTTTTAGTTGATgat
ggcaaatttttgatattatgctcctaataaagtgtagaactgacaaaaaa
gaattgacaagaaaaaaaaaaaattacggcTACGAACGGATTCAatgtga
aaagtagataaagaaaatgggcttatttgttaagtttcgaccatcTGGTC
CCGAGAAATGGTATTTTGAAGGCGAAAATGGACATTTTTGGCGTTTTCCG
ATGACGTGAGCATTTTTCTAGGAGCATATTTTAAAAGGAAAAATCTTTCT
CACAGCTGGCGGCTGGATAGCTCTAATTTATTAGTATCCATAGTTGGTAT
TGTTTGTTAACTTTCGACATGAACTTAGATCTCGACAGATATTTTAGTTT
AAGTATTGAAAATTATCGATATTTTCCGCTGAGTCAGCAGTTTTTCAGTA
TATATACACCTTAGatatgaattatctcgagatctagacactAAAACATA
CCATTTTTAAACCTAGgggtttttcgaaaaaaagaaaaaaaagtccgcaa
aaaaaagaaaaaaagttttcaaaaaaataaaaaaagttgttaaccctatt
tttatcagggggggtgttttccaccaggctggcactcttttgctaatagc
tcactgaaaattttttttaacactctgaaagtttttgac Run BLAST on NCBI transcript from alignment at scaffold_444:260..4250+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065749 ID=TCONS_00065749|Name=TCONS_00065749|organism=Clytia hemisphaerica|type=transcript|length=3991bp|location=Sequence derived from alignment at scaffold_444:260..4250+ (Clytia hemisphaerica)
CCATAATATAGGAATAGTAAATTATTGATCTGTAGATTGTAAAACTAACA
ATTCCCCGAAAATGTATCTGAATAGGTGTAGGGAATCTTTGAACGTTCAT
GAAAAGTATAAAAGGGGTATGAAAGTAAAGCCGAAATCAAAGCAAATTAT
TTACCGAGTTGTATATGGTGGCGACATACTGAAAGAAAACACTTCAAGAA
ACTAAATAAAAGCTTTACGGAGGTTAGAAGTACCTATCTTAACCAACTAC
CTGGTATATCACAAATCAAAGTTTCTTAGCTTCTGAGGAGGATGAAGGGC
TGTTTGGCAGCTTTTGCTTTTTGCTTGATTTCGGCCATTTTATCAGGTTA
GTTATTTTGTTTCGTTTTTGTTTGATAGATTTTGAATCATTTAACGTATC
TGTTACCATTTGCTTACTCAGCATCTTTAAACAAAGGAAAACTAATTTTC
ATCCCCagaaaccttgaaaaaaattctatcttTTCTTGTAATGTACTTGT
GAAGTCAGGCTTTTTATCGCAAGATTAAATCTTACAAAAACACACGAAAC
ACACGAGTGCaaattaaccctattagccccaggggggggggggggggaaT
CTACCACGCTGGTGTTCTTTTGTGTATATCACAGAGAAAAATTTTTGAAA
CGAATTGAAACTTTCTGACTTTTAATAAAATCTTATTAAGAGTACTTATG
CAAATTTTTAGGGTCATAGATCCTCTAGGTCAGGCTTTATGACTTTATTG
TGAAACATGACATAAAACAAAGCTAAAATCGCTTAAAACTTAAAATTCTA
AAATTGCGATAACTTCTGAAGTTTTGATCCAATCATATTCAAAATTTGAC
AGGTTATAGGTAATAACAATGTGATTTAAAAAAACATTAAAAAAAATGTT
GAAATTGATGACGTCAAAACCGGCAGTTATGTTAAAGAACAACCTTTTAT
CTTTCAGAATCTTTAAACAGAATCTAAATATCTTTATTGCTTCGACTGTG
AAAGACATTTTTGTAAACCATACATTTTGGCTTTTTTCCGACAGGTGGAA
ATTTTGTGATGACGTCATCGCTTTTTGAATGCCGTTATCAAAATTCTATT
TCTTCCTGGATTGTGTCATGATGGAGAACATCTGTACCAATTTTCATGGC
CATAGCTCTTCTAGATCAAAAATAATCGAGGGTGGTAGATTCTACCCCCT
GGGGCTACAAAAACCAAAAAAGGTTGGGGTTAATAGTGTACTACTTTTCA
TTAAATCTTTGGGGCGAAGAGCACTCTTATTTTTATATCATTCTATTTTT
CTCGAAGAATTCTCTGCTTTGTTAACATAGGGATGTGCGCAGTCTACCAT
TTACTTCGCGCTAAAAGTTACCGTGGCCGATTTATCATTTTTCTATTAGG
AATATTTCACGATGTTTTGAAATCAAAAATTGAAGAATTTTTCGATCAAG
GATCATCTATTCCGAACATTAACCGAGGTAATGATGTAAAAATTGAAAAA
GGAAAATTTCTAAAATAGATTTCTGTAGAAAAAATGCTTGCTTTTGGAGG
CTGATTTCCTTGAAAGCATTTTGTTTTCATTTTAGGCCAATCAGATGCTT
TCGATTGGAAGAAAGCACTTGACGGTTTACGCGTGCTTGGAGGGTTGAGG
GACAATGGGGAGGTTAGTATCATTCGGTTTAATACAGTAACAATGTTTAA
TACAGTGTGTCTGCAAGAAAAGTGACTTACAATGCTAATTTCAATCATTT
TTCAAAAACCTTTTCTAGTTAATTCGGATTAGAATATCGATTGACCGAGC
AATAATGGCGGTTTTACGCTTTTTTTCGGGAAACAATGTATTCATAAACT
TAATTACTGATTGATTACGCGTTTCAAAATCTTACAAGTAATTTTAAAAC
TACAATATGAAAGGGATGGCCCGTGCATGAAGGAAGCATTTTTCAAAAGG
TCATGTCTAGCTACCTTCATACTATACCATAGTATAGTTTTACATAAATT
TAAATAATAAGACTCGTGATTTTTAACAAGTTATTTTGCGTTTTTACGCG
ACACTTTAAGAGCCTTTTCCCTTGATGTTTCGTAAATTTGGGACCCTGTC
AGAGTCTTAATTGCTATTTTATGGTTTTTGTCACTAGGTATGACACTATA
TATAACTAGAACTTCTATAATAACATTTTGGTGTTGTAAACATTGAAATT
TGAAACCCTTACCCACCCCCATCACTGAAACTTTCTCACCAGATCACTGA
AATGAGTGTGTAGTTATAGTTAAATCTTTTATAGGTGGTGATAGATACGA
ATGTTAGCATTCCTCCTAGGTTAGGGTCGAAATATAACATAAACTTAACA
AGCCAAGATAGGGCAATTTTGTGAAATTTTTGAACATTCCTTGTGGAAAG
TAATTACAATTAATTTACTTGAAATGCTCGAATAATGGCAATTGTTCATA
TTCAAAGATGGTGATATTCTTAGCATTTTTTTGCCGTTTTACATCATGAA
TATTCTTGTAAAATTCTACAAGTTTACTTTAAAAAACATGCATGCAAAAT
TTCCATACATCTTATCTAGATGAAAAAATGACGGCATGCATGCGTGAGTT
GACCTTTTTTTGATTCTGTTTACAGTTTGATCGAGGAGGTGGTAAAATGG
TAACCTTTTCGTATAAAGAAACGATGCGTTTCGAGAAATATCTCCCACGT
TTGAAGTATCATGGTATCTGTTTTGATAAAACTACTGGCATCTTTGCTCA
ATCTTTGACCAATGGGAGAACTGGCAACGTCGACAAATGCTTGGAAGAGC
TGTTTCAAAAGTTAGCTCGCAAAGGGGAATTGTGAGCTGGCACTTTCATT
TTTCGAGATTTTCCATTTTTTTTGTAGTTTTATTGAAGTTCTCTGTATTG
TAGTGTCTTATTGAAGTTCTTTGCAAGAAAACTAAAGTGTGGCAGTAGCA
GCAAATTGATCGAGTAgacggaaaattcttattcgccttaaaaaacggat
tttcgtatattggggaaattttctttaaccaaataagaaaatatagcttt
tctcaatgttgactctttatttttttctgatttttagcacaatgatgcaa
aatgacaatgcctaaaatgtgacagagcctcaattttcgaaaaaaagtat
attttgacaaatttgggccaaaaactgcttaaaaatagggttttttgccg
actttttttctttttttgttgactttttttcttttttgtcaacttttttt
ctttttttgagaactttttttctttttttctttttttcaaaaaaaaggtt
ttttttttaatttaacttttcttTTCGAGACTGCTTTCTTTTAGTTGATg
atggcaaatttttgatattatgctcctaataaagtgtagaactgacaaaa
aagaattgacaagaaaaaaaaaaaattacggcTACGAACGGATTCAatgt
gaaaagtagataaagaaaatgggcttatttgttaagtttcgaccatcTGG
TCCCGAGAAATGGTATTTTGAAGGCGAAAATGGACATTTTTGGCGTTTTC
CGATGACGTGAGCATTTTTCTAGGAGCATATTTTAAAAGGAAAAATCTTT
CTCACAGCTGGCGGCTGGATAGCTCTAATTTATTAGTATCCATAGTTGGT
ATTGTTTGTTAACTTTCGACATGAACTTAGATCTCGACAGATATTTTAGT
TTAAGTATTGAAAATTATCGATATTTTCCGCTGAGTCAGCAGTTTTTCAG
TATATATACACCTTAGatatgaattatctcgagatctagacactAAAACA
TACCATTTTTAAACCTAGgggtttttcgaaaaaaagaaaaaaaagtccgc
aaaaaaaagaaaaaaagttttcaaaaaaataaaaaaagttgttaacccta
tttttatcagggggggtgttttccaccaggctggcactcttttgctaata
gctcactgaaaattttttttaacactctgaaagtttttgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065749-exon-scaffold_444-1491911889:260..605 | TCONS_00065749-exon-scaffold_444-1491911889:260..605 | Clytia hemisphaerica | exon |
| TCONS_00065749-exon-scaffold_444-1510915933:260..605 | TCONS_00065749-exon-scaffold_444-1510915933:260..605 | Clytia hemisphaerica | exon |
| TCONS_00065749-exon-scaffold_444-1575043694:260..605 | TCONS_00065749-exon-scaffold_444-1575043694:260..605 | Clytia hemisphaerica | exon |
| TCONS_00065749-exon-scaffold_444-1491911889:1845..1921 | TCONS_00065749-exon-scaffold_444-1491911889:1845..1921 | Clytia hemisphaerica | exon |
| TCONS_00065749-exon-scaffold_444-1510915933:1845..1921 | TCONS_00065749-exon-scaffold_444-1510915933:1845..1921 | Clytia hemisphaerica | exon |
| TCONS_00065749-exon-scaffold_444-1575043694:1845..1921 | TCONS_00065749-exon-scaffold_444-1575043694:1845..1921 | Clytia hemisphaerica | exon |
| TCONS_00065749-exon-scaffold_444-1491911889:2885..4250 | TCONS_00065749-exon-scaffold_444-1491911889:2885..4250 | Clytia hemisphaerica | exon |
| TCONS_00065749-exon-scaffold_444-1510915933:2885..4250 | TCONS_00065749-exon-scaffold_444-1510915933:2885..4250 | Clytia hemisphaerica | exon |
| TCONS_00065749-exon-scaffold_444-1575043694:2885..4250 | TCONS_00065749-exon-scaffold_444-1575043694:2885..4250 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_444 | supercontig | scaffold_444:260..4250 + |
Blast
The following BLAST results are available for this feature:
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