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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065746 ID=TCONS_00065746|Name=TCONS_00065746|organism=Clytia hemisphaerica|type=transcript|length=1351bp
CCATTACGTTTTGAACCCTTCTTGATTCGCGTTTCATGTAACGTGAAATC
CTGAAATAATAATACGACATGAATCCAGTCGAACTAAGTAACGGTAATAC
ATAGGCAAGCTGGAAAGTTAAATGGAAATCTAATAAATCTACATCCCATA
TCCAGTAACAGTTGTATCTGCCAGGCTCACCATGTAAAAGTGGCGATAAC
ATTTCAATTTGTACGTACGTCAATCCAACACAAATACAGATAACACCAAA
TGAGAGAGCTGAGTATTTCCTTACGGTCGTTTTTTTCGCAAACGGATGAA
CTATGTTTTTGTACCTTTCGTAAGAAATAAAAGCCACTAACCAGAAAGAT
AGATACGGAAGTGTGTAGCGCGCAAACGGCATTGCGTATACGCAAGCGAA
TTCACCAATCGGGTAACTATTTTGCCAATCGTTGTAATAGTTATACGTAA
TGAAACCACAGTAAAGAGCATCAACTAATGCTAGTAGCGTGACTAAAAAA
TGGTATGCTTTCATTTTCGAAATAGTTCTGTTCTTTATTGTATTTTTCCG
AATGAAATGCACCATGATGGATGTGTTACCAAGGATACCGAATACAGCTA
GTGCGACCAAAACTCGAAAACAATAATATTGGACATCTATCCGATATTCT
TCAAGTTTCCCGTATTCCAGGGAAACTTTCATTTGGTTGATCTGATCTTG
AGATAAATGGCCCTTTATTGTTATATTGACAAACGACATAAATTGGTCCC
ATGTTATTTTGTATTTCTCAGTGATGCTGCGATATGTCTTTACGTAGTTT
AAGTAAGAAACTTTATCATTGTATGAGTGGACTTCGTTTACAGCAGCTTC
AAATCGCTTATAATCATCAAGGTAGTTCATCATGCTTGAATTAAAGGTAA
CTCTGCCCGAGATATAGCTGTATTGAGTATGCTGCCTTATCTGTGACGCA
GGTGGTTTAGTTTTCTAATGTTTCCAGATCTTAACCAAAGGTAATGGCAA
ATGAGAAATTTTACTTAGACTGTTTCGGATCGTTTCAATCTCTTCTTAGg
gttctgctcatcctctagcgaaaagggttcttatataggaagtatatcta
atCACTAATCAATGCCCACTCGTTTTTGAGGTCCCAAGTAAAGTTCAATC
AATCACCGAATGAGTCTCTCTCACGCTCTATTAATGATTCGGCTGTGAAT
GTTTTGGAGCgtgaaccacaagcgatttgaaaGATTCTATAGCACTGGCT
CCTTTGCCAAACACAAATCTCcttgctgaaaagtgtgtctAGTTGATCCA
CTTCAAGCGAATatcaggctcggatacagagggaggctataaccaatggc
g Run BLAST on NCBI protein sequence of TCONS_00065746-protein >TCONS_00065746-protein ID=TCONS_00065746-protein|Name=TCONS_00065746-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MMNYLDDYKRFEAAVNEVHSYNDKVSYLNYVKTYRSITEKYKITWDQFMS
FVNITIKGHLSQDQINQMKVSLEYGKLEEYRIDVQYYCFRVLVALAVFGI
LGNTSIMVHFIRKNTIKNRTISKMKAYHFLVTLLALVDALYCGFITYNYY
NDWQNSYPIGEFACVYAMPFARYTLPYLSFWLVAFISYERYKNIVHPFAK
KTTVRKYSALSFGVICICVGLTYVQIEMLSPLLHGEPGRYNCYWIWDVDL
LDFHLTFQLAYVLPLLSSTGFMSYYYFRISRYMKRESRRVQNVM Run BLAST on NCBI transcript from alignment at scaffold_443:271194..272544 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065746 ID=TCONS_00065746|Name=TCONS_00065746|organism=Clytia hemisphaerica|type=transcript|length=1351bp|location=Sequence derived from alignment at scaffold_443:271194..272544 (Clytia hemisphaerica)
cgccattggttatagcctccctctgtatccgagcctgatATTCGCTTGAA
GTGGATCAACTagacacacttttcagcaagGAGATTTGTGTTTGGCAAAG
GAGCCAGTGCTATAGAATCtttcaaatcgcttgtggttcacGCTCCAAAA
CATTCACAGCCGAATCATTAATAGAGCGTGAGAGAGACTCATTCGGTGAT
TGATTGAACTTTACTTGGGACCTCAAAAACGAGTGGGCATTGATTAGTGa
ttagatatacttcctatataagaacccttttcgctagaggatgagcagaa
ccCTAAGAAGAGATTGAAACGATCCGAAACAGTCTAAGTAAAATTTCTCA
TTTGCCATTACCTTTGGTTAAGATCTGGAAACATTAGAAAACTAAACCAC
CTGCGTCACAGATAAGGCAGCATACTCAATACAGCTATATCTCGGGCAGA
GTTACCTTTAATTCAAGCATGATGAACTACCTTGATGATTATAAGCGATT
TGAAGCTGCTGTAAACGAAGTCCACTCATACAATGATAAAGTTTCTTACT
TAAACTACGTAAAGACATATCGCAGCATCACTGAGAAATACAAAATAACA
TGGGACCAATTTATGTCGTTTGTCAATATAACAATAAAGGGCCATTTATC
TCAAGATCAGATCAACCAAATGAAAGTTTCCCTGGAATACGGGAAACTTG
AAGAATATCGGATAGATGTCCAATATTATTGTTTTCGAGTTTTGGTCGCA
CTAGCTGTATTCGGTATCCTTGGTAACACATCCATCATGGTGCATTTCAT
TCGGAAAAATACAATAAAGAACAGAACTATTTCGAAAATGAAAGCATACC
ATTTTTTAGTCACGCTACTAGCATTAGTTGATGCTCTTTACTGTGGTTTC
ATTACGTATAACTATTACAACGATTGGCAAAATAGTTACCCGATTGGTGA
ATTCGCTTGCGTATACGCAATGCCGTTTGCGCGCTACACACTTCCGTATC
TATCTTTCTGGTTAGTGGCTTTTATTTCTTACGAAAGGTACAAAAACATA
GTTCATCCGTTTGCGAAAAAAACGACCGTAAGGAAATACTCAGCTCTCTC
ATTTGGTGTTATCTGTATTTGTGTTGGATTGACGTACGTACAAATTGAAA
TGTTATCGCCACTTTTACATGGTGAGCCTGGCAGATACAACTGTTACTGG
ATATGGGATGTAGATTTATTAGATTTCCATTTAACTTTCCAGCTTGCCTA
TGTATTACCGTTACTTAGTTCGACTGGATTCATGTCGTATTATTATTTCA
GGATTTCACGTTACATGAAACGCGAATCAAGAAGGGTTCAAAACGTAATG
G Coding sequence (CDS) from alignment at scaffold_443:271194..272544 >TCONS_00065746 ID=TCONS_00065746|Name=TCONS_00065746|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_443:271194..272544 (Clytia hemisphaerica)
ATGATGAACTACCTTGATGATTATAAGCGATTTGAAGCTGCTGTAAACGA
AGTCCACTCATACAATGATAAAGTTTCTTACTTAAACTACGTAAAGACAT
ATCGCAGCATCACTGAGAAATACAAAATAACATGGGACCAATTTATGTCG
TTTGTCAATATAACAATAAAGGGCCATTTATCTCAAGATCAGATCAACCA
AATGAAAGTTTCCCTGGAATACGGGAAACTTGAAGAATATCGGATAGATG
TCCAATATTATTGTTTTCGAGTTTTGGTCGCACTAGCTGTATTCGGTATC
CTTGGTAACACATCCATCATGGTGCATTTCATTCGGAAAAATACAATAAA
GAACAGAACTATTTCGAAAATGAAAGCATACCATTTTTTAGTCACGCTAC
TAGCATTAGTTGATGCTCTTTACTGTGGTTTCATTACGTATAACTATTAC
AACGATTGGCAAAATAGTTACCCGATTGGTGAATTCGCTTGCGTATACGC
AATGCCGTTTGCGCGCTACACACTTCCGTATCTATCTTTCTGGTTAGTGG
CTTTTATTTCTTACGAAAGGTACAAAAACATAGTTCATCCGTTTGCGAAA
AAAACGACCGTAAGGAAATACTCAGCTCTCTCATTTGGTGTTATCTGTAT
TTGTGTTGGATTGACGTACGTACAAATTGAAATGTTATCGCCACTTTTAC
ATGGTGAGCCTGGCAGATACAACTGTTACTGGATATGGGATGTAGATTTA
TTAGATTTCCATTTAACTTTCCAGCTTGCCTATGTATTACCGTTACTTAG
TTCGACTGGATTCATGTCGTATTATTATTTCAGGATTTCACGTTACATGA
AACGCGAATCAAGAAGGGTTCAAAACGTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065746-exon-scaffold_443-1491911889:271194..272544 | TCONS_00065746-exon-scaffold_443-1491911889:271194..272544 | Clytia hemisphaerica | exon |
| TCONS_00065746-exon-scaffold_443-1510915933:271194..272544 | TCONS_00065746-exon-scaffold_443-1510915933:271194..272544 | Clytia hemisphaerica | exon |
| TCONS_00065746-exon-scaffold_443-1575043694:271194..272544 | TCONS_00065746-exon-scaffold_443-1575043694:271194..272544 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_443 | supercontig | scaffold_443:271194..272544 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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