|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065739 ID=TCONS_00065739|Name=TCONS_00065739|organism=Clytia hemisphaerica|type=transcript|length=1239bp
tgtggactcaaaaacaccctatttcttaggaaaatgatcaaaaatattca
caaaatagtgaaaataaaaacatgttaagaacatttttagactaaaatcc
gaaaagttaagaacatccgaaggcttcaaaaatgttggatgttcttataa
gaaaaatttgtaGTACTAGAAGTGAAGTGTAATTTTATAAATACTATACG
TAACTATGAATGTTCTGCAATGGTGGCCATATTTGTTCCCAGCTTTGTAG
ACATACGTTTATTGGATTGGTTTGAAGTCAAGGAAGTTGAAGACAATCTT
CTCTTACTCAAGAAAGGAAAACCGAGACcgatttctttcgaaaataaTTT
CGTTAATTCATCATCCATTGACTCTCTGTTTGGGAAAGTGAGACGCTTCA
AATCTACGTGACCAATAGGCATTTTGCTGTCTCTCCATGTGATTGGTCTT
TGGGTGGCTTGTATTGTTTTCGGCGCCTGCGTGAACAAACGTAAGTAATC
AAAATAGTACATTAACGCGATGATATATAGAAATTTCAAGAAAGAGCCGA
TAACTAGCATCACTATGACAATATAATCTGCCCACTTCTcatctaccatt
tttgtttgtcTTATCATGGCAACAATATCATAACATGAGGATGCTATCCA
GGCTATAAAACTACACACTAAAGGGAGTAGCATCATTTTTCGTTGCCCGT
TGACATGCATACTTGATGACGTCACAGGAACAGCCAATAAAGCAGAAAGA
ATCGTTAAAGCATGAACTACAATCCGTCGTATAAATGTTTCTTTATCCTC
GTCATGAAATTCTTCTAAATCCCATCCTTCAAACGGTGTATAAACAAGAG
ACACAATTGATGATATTGCACTTATGAAAGTTAATAGCGCGATTGCCATT
GTAATAAAACGGTAATTGATTCCTGCCATTTTGTGAGTTGGCAAAAAACC
TACGCTAATTGTTTCAAATTCCAGTTAAAAACGCCTACACCATTGGCAAG
GAAGGCTATTTTACATTTTCTCCAAATTACTTCTTTCCCTTGCGACAAAA
GTGTTTAAAACTCTCTGGTAGGTTATGTGCTACGAATGCTTTCTACAGCT
AAACCTCAAACACTTGATAATTTCTATTAACAGTTCTATAAGAGTCATAG
TAAAATTATCTCCGTCACACCCAAAAGTTAAAATATCTATTGCAACCAGA
AAATTTAAGTTTCCCTTTTCACCCCTACTTGTTtagtga Run BLAST on NCBI protein sequence of TCONS_00065739-protein >TCONS_00065739-protein ID=TCONS_00065739-protein|Name=TCONS_00065739-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MAGINYRFITMAIALLTFISAISSIVSLVYTPFEGWDLEEFHDEDKETFI
RRIVVHALTILSALLAVPVTSSSMHVNGQRKMMLLPLVCSFIAWIASSCY
DIVAMIRQTKMVDEKWADYIVIVMLVIGSFLKFLYIIALMYYFDYLRLFT
QAPKTIQATQRPITWRDSKMPIGHVDLKRLTFPNRESMDDELTKLFSKEI
GLGFPFLSKRRLSSTSLTSNQSNKRMSTKLGTNMATIAEHS Run BLAST on NCBI transcript from alignment at scaffold_443:180737..181975 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065739 ID=TCONS_00065739|Name=TCONS_00065739|organism=Clytia hemisphaerica|type=transcript|length=1239bp|location=Sequence derived from alignment at scaffold_443:180737..181975 (Clytia hemisphaerica)
tcactaAACAAGTAGGGGTGAAAAGGGAAACTTAAATTTTCTGGTTGCAA
TAGATATTTTAACTTTTGGGTGTGACGGAGATAATTTTACTATGACTCTT
ATAGAACTGTTAATAGAAATTATCAAGTGTTTGAGGTTTAGCTGTAGAAA
GCATTCGTAGCACATAACCTACCAGAGAGTTTTAAACACTTTTGTCGCAA
GGGAAAGAAGTAATTTGGAGAAAATGTAAAATAGCCTTCCTTGCCAATGG
TGTAGGCGTTTTTAACTGGAATTTGAAACAATTAGCGTAGGTTTTTTGCC
AACTCACAAAATGGCAGGAATCAATTACCGTTTTATTACAATGGCAATCG
CGCTATTAACTTTCATAAGTGCAATATCATCAATTGTGTCTCTTGTTTAT
ACACCGTTTGAAGGATGGGATTTAGAAGAATTTCATGACGAGGATAAAGA
AACATTTATACGACGGATTGTAGTTCATGCTTTAACGATTCTTTCTGCTT
TATTGGCTGTTCCTGTGACGTCATCAAGTATGCATGTCAACGGGCAACGA
AAAATGATGCTACTCCCTTTAGTGTGTAGTTTTATAGCCTGGATAGCATC
CTCATGTTATGATATTGTTGCCATGATAAgacaaacaaaaatggtagatg
AGAAGTGGGCAGATTATATTGTCATAGTGATGCTAGTTATCGGCTCTTTC
TTGAAATTTCTATATATCATCGCGTTAATGTACTATTTTGATTACTTACG
TTTGTTCACGCAGGCGCCGAAAACAATACAAGCCACCCAAAGACCAATCA
CATGGAGAGACAGCAAAATGCCTATTGGTCACGTAGATTTGAAGCGTCTC
ACTTTCCCAAACAGAGAGTCAATGGATGATGAATTAACGAAAttattttc
gaaagaaatcgGTCTCGGTTTTCCTTTCTTGAGTAAGAGAAGATTGTCTT
CAACTTCCTTGACTTCAAACCAATCCAATAAACGTATGTCTACAAAGCTG
GGAACAAATATGGCCACCATTGCAGAACATTCATAGTTACGTATAGTATT
TATAAAATTACACTTCACTTCTAGTACtacaaatttttcttataagaaca
tccaacatttttgaagccttcggatgttcttaacttttcggattttagtc
taaaaatgttcttaacatgtttttattttcactattttgtgaatattttt
gatcattttcctaagaaatagggtgtttttgagtccaca Coding sequence (CDS) from alignment at scaffold_443:180737..181975 >TCONS_00065739 ID=TCONS_00065739|Name=TCONS_00065739|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_443:180737..181975 (Clytia hemisphaerica)
ATGGCAGGAATCAATTACCGTTTTATTACAATGGCAATCGCGCTATTAAC
TTTCATAAGTGCAATATCATCAATTGTGTCTCTTGTTTATACACCGTTTG
AAGGATGGGATTTAGAAGAATTTCATGACGAGGATAAAGAAACATTTATA
CGACGGATTGTAGTTCATGCTTTAACGATTCTTTCTGCTTTATTGGCTGT
TCCTGTGACGTCATCAAGTATGCATGTCAACGGGCAACGAAAAATGATGC
TACTCCCTTTAGTGTGTAGTTTTATAGCCTGGATAGCATCCTCATGTTAT
GATATTGTTGCCATGATAAgacaaacaaaaatggtagatgAGAAGTGGGC
AGATTATATTGTCATAGTGATGCTAGTTATCGGCTCTTTCTTGAAATTTC
TATATATCATCGCGTTAATGTACTATTTTGATTACTTACGTTTGTTCACG
CAGGCGCCGAAAACAATACAAGCCACCCAAAGACCAATCACATGGAGAGA
CAGCAAAATGCCTATTGGTCACGTAGATTTGAAGCGTCTCACTTTCCCAA
ACAGAGAGTCAATGGATGATGAATTAACGAAAttattttcgaaagaaatc
gGTCTCGGTTTTCCTTTCTTGAGTAAGAGAAGATTGTCTTCAACTTCCTT
GACTTCAAACCAATCCAATAAACGTATGTCTACAAAGCTGGGAACAAATA
TGGCCACCATTGCAGAACATTCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065739-exon-scaffold_443-1491911889:180737..181975 | TCONS_00065739-exon-scaffold_443-1491911889:180737..181975 | Clytia hemisphaerica | exon |
| TCONS_00065739-exon-scaffold_443-1510915933:180737..181975 | TCONS_00065739-exon-scaffold_443-1510915933:180737..181975 | Clytia hemisphaerica | exon |
| TCONS_00065739-exon-scaffold_443-1575043694:180737..181975 | TCONS_00065739-exon-scaffold_443-1575043694:180737..181975 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_443 | supercontig | scaffold_443:180737..181975 . |
Blast
The following BLAST results are available for this feature:
|
