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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065737 ID=TCONS_00065737|Name=TCONS_00065737|organism=Clytia hemisphaerica|type=transcript|length=1998bp
GAAAATACTCCCATTGCTGTCCGTCTCATCAAGTTTTAATGAGTTTCACT
GGGCTCCTCTGAAGGTCACCTGGCTAGAGTTTAGTAGTATAAAGTAACAT
GCAATTGCAGTCGAGGTTGACTGGAAAGCTCCCTTTTCCTTTAAGTGGTA
CTCCtttgtttaaaaatgataaaagttcaaaccttcaaacatttttatgt
tgatttttatttttcagatggACGCCAACGCGATCCGTTCAGCCTGTCAA
CATTTTGGTACTCTCTTACAATTCAAAGCTGTGCCTGGTATGGCATGTGC
CCAATACGAAACAGTGTCGATTGCAAAACAAGCCGCCATGGCGATGACTA
ATCCACAAATTACCGCCTTTCAAAGTAACGAACAAGAATGTATGAGTGTC
ATTGAATCGCAAAATATTCAACCCGTACAACCACCACCACCCGCCGCCCA
ACCTAGTTTCTCATCTATGGGTGGTCTTTGGGGAACGCCCGCTCACCCCA
CACAAGCTCCACCTGTGGCGCCGTTTGTCCAACAAAGTTTCGCGCCACCT
TCGTTCGGTGGCCAAGTAGCGCCAGGACCGGCTCCAACAAGCATAGGTAT
GAACGGAGCATTTAATCACTGGGGACTCCCAGCCACCGCTCAACCTCCCA
TGGTACAATCAAGCCAATTATGGGGACCAGGACCTGGACCCCAACAACCG
ACAGCAAACGCGTTCCCGGGTTACAACCCGACTGGCTGGCTTCAACAATC
GAAACCTGTTGAGCCAATAGTGCCACCGAGTACGGGATTCGGGCAAAATG
TTGATCATTGTTTACCAAGCGAGTTGTTGAATAATTTCACACGAGAACAG
GGTTCTTAGAAATTCGTCATCGCTTGTTCGGAGGAGTGTTCTTTTTTTGT
ATAATATACTCATTACTACCCCCCGATGTCATTCTACTTACaccttttta
aagaaattgatGAACACAGTGTTGTGTCAACGAGttaagtttttttatta
tattttttgtggatctttgaaaaataatggaTGGATTATTGGAATTTTGG
ATTGTTCGAACTAGCAAAAGCAACGGACAATTGTTTTCTCCCCTTTTTTA
TTGATATATCATTTGGACGAATTGATGAAATGGAATTGGAtggttatttt
cttttattttgtgatcgtgttgatttttttgtttttatttctcaGGAATT
GTTCACCTTAAAACCATGAAGTGCAGTAAACCCTGAAACACGGGCTACCT
GTTTTCGTTACGGATTTTTTCGGTGGCAATTTCCTAAATGAACAATACTT
ACGGACTTGAAAGGACAAACCCTGAAATATGGGTATGTTCACACTATATA
GATCATTATTACTTTTTAAGTAAAGGATAATGGATTGTTTACACTTGGCA
CGGAACTCATTAAGTTTCGGTCaggtttttatttgtttatgtttatggct
atattttttatttaaatgtaAGTGTTCGTCACAAATCtctatcatttttt
ttaatcaaaaaaagtCGTTCAGTTAAAATGTACAGATTGTATCCAGTGTA
GTGTAAACCAAGCCCTGAAATATGGGTCTGTTTACATTATGTTGGTTTAT
TTTAGAACGACTATCGTTTGTCACAAATAAGTTGCTTTTTATATGTTACT
CCAACCAAAAATCGTCcattaaattatatttttctctcGTCTGCCCTCTC
TCTCTCACTAGCAATCATTATATATTGttagatttttctttgtttaattt
tcattgtggtgaaaatgaaaaagaattatCAATATTATTAAAGGAAAATA
TTTAGTCCGATTTTTTCCACTGCAttgggcttttttccaaggCTGCTGGC
ATTCACTAACGGGTTCATGTTCCTTATACTACCCATgggtttacacgttt
ttttataagaacaaactatacaagaacattaGGCTttgatggtcaaaatg
ttaagaacaaattaagaacattttaaggctttgcagacaaAAATGcgc Run BLAST on NCBI protein sequence of TCONS_00065737-protein >TCONS_00065737-protein ID=TCONS_00065737-protein|Name=TCONS_00065737-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MLIFIFQMDANAIRSACQHFGTLLQFKAVPGMACAQYETVSIAKQAAMAM
TNPQITAFQSNEQECMSVIESQNIQPVQPPPPAAQPSFSSMGGLWGTPAH
PTQAPPVAPFVQQSFAPPSFGGQVAPGPAPTSIGMNGAFNHWGLPATAQP
PMVQSSQLWGPGPGPQQPTANAFPGYNPTGWLQQSKPVEPIVPPSTGFGQ
NVDHCLPSELLNNFTREQGS Run BLAST on NCBI transcript from alignment at scaffold_443:50066..52063 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065737 ID=TCONS_00065737|Name=TCONS_00065737|organism=Clytia hemisphaerica|type=transcript|length=1998bp|location=Sequence derived from alignment at scaffold_443:50066..52063 (Clytia hemisphaerica)
gcgCATTTttgtctgcaaagccttaaaatgttcttaatttgttcttaaca
ttttgaccatcaaAGCCtaatgttcttgtatagtttgttcttataaaaaa
acgtgtaaacccATGGGTAGTATAAGGAACATGAACCCGTTAGTGAATGC
CAGCAGccttggaaaaaagcccaaTGCAGTGGAAAAAATCGGACTAAATA
TTTTCCTTTAATAATATTGataattctttttcattttcaccacaatgaaa
attaaacaaagaaaaatctaaCAATATATAATGATTGCTAGTGAGAGAGA
GAGGGCAGACgagagaaaaatataatttaatgGACGATTTTTGGTTGGAG
TAACATATAAAAAGCAACTTATTTGTGACAAACGATAGTCGTTCTAAAAT
AAACCAACATAATGTAAACAGACCCATATTTCAGGGCTTGGTTTACACTA
CACTGGATACAATCTGTACATTTTAACTGAACGactttttttgattaaaa
aaaatgatagaGATTTGTGACGAACACTtacatttaaataaaaaatatag
ccataaacataaacaaataaaaacctGACCGAAACTTAATGAGTTCCGTG
CCAAGTGTAAACAATCCATTATCCTTTACTTAAAAAGTAATAATGATCTA
TATAGTGTGAACATACCCATATTTCAGGGTTTGTCCTTTCAAGTCCGTAA
GTATTGTTCATTTAGGAAATTGCCACCGAAAAAATCCGTAACGAAAACAG
GTAGCCCGTGTTTCAGGGTTTACTGCACTTCATGGTTTTAAGGTGAACAA
TTCCtgagaaataaaaacaaaaaaatcaacacgatcacaaaataaaagaa
aataaccaTCCAATTCCATTTCATCAATTCGTCCAAATGATATATCAATA
AAAAAGGGGAGAAAACAATTGTCCGTTGCTTTTGCTAGTTCGAACAATCC
AAAATTCCAATAATCCAtccattatttttcaaagatccacaaaaaatata
ataaaaaaacttaaCTCGTTGACACAACACTGTGTTCatcaatttcttta
aaaaggtGTAAGTAGAATGACATCGGGGGGTAGTAATGAGTATATTATAC
AAAAAAAGAACACTCCTCCGAACAAGCGATGACGAATTTCTAAGAACCCT
GTTCTCGTGTGAAATTATTCAACAACTCGCTTGGTAAACAATGATCAACA
TTTTGCCCGAATCCCGTACTCGGTGGCACTATTGGCTCAACAGGTTTCGA
TTGTTGAAGCCAGCCAGTCGGGTTGTAACCCGGGAACGCGTTTGCTGTCG
GTTGTTGGGGTCCAGGTCCTGGTCCCCATAATTGGCTTGATTGTACCATG
GGAGGTTGAGCGGTGGCTGGGAGTCCCCAGTGATTAAATGCTCCGTTCAT
ACCTATGCTTGTTGGAGCCGGTCCTGGCGCTACTTGGCCACCGAACGAAG
GTGGCGCGAAACTTTGTTGGACAAACGGCGCCACAGGTGGAGCTTGTGTG
GGGTGAGCGGGCGTTCCCCAAAGACCACCCATAGATGAGAAACTAGGTTG
GGCGGCGGGTGGTGGTGGTTGTACGGGTTGAATATTTTGCGATTCAATGA
CACTCATACATTCTTGTTCGTTACTTTGAAAGGCGGTAATTTGTGGATTA
GTCATCGCCATGGCGGCTTGTTTTGCAATCGACACTGTTTCGTATTGGGC
ACATGCCATACCAGGCACAGCTTTGAATTGTAAGAGAGTACCAAAATGTT
GACAGGCTGAACGGATCGCGTTGGCGTccatctgaaaaataaaaatcaac
ataaaaatgtttgaaggtttgaacttttatcatttttaaacaaaGGAGTA
CCACTTAAAGGAAAAGGGAGCTTTCCAGTCAACCTCGACTGCAATTGCAT
GTTACTTTATACTACTAAACTCTAGCCAGGTGACCTTCAGAGGAGCCCAG
TGAAACTCATTAAAACTTGATGAGACGGACAGCAATGGGAGTATTTTC Coding sequence (CDS) from alignment at scaffold_443:50066..52063 >TCONS_00065737 ID=TCONS_00065737|Name=TCONS_00065737|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_443:50066..52063 (Clytia hemisphaerica)
CTAAGAACCCTGTTCTCGTGTGAAATTATTCAACAACTCGCTTGGTAAAC
AATGATCAACATTTTGCCCGAATCCCGTACTCGGTGGCACTATTGGCTCA
ACAGGTTTCGATTGTTGAAGCCAGCCAGTCGGGTTGTAACCCGGGAACGC
GTTTGCTGTCGGTTGTTGGGGTCCAGGTCCTGGTCCCCATAATTGGCTTG
ATTGTACCATGGGAGGTTGAGCGGTGGCTGGGAGTCCCCAGTGATTAAAT
GCTCCGTTCATACCTATGCTTGTTGGAGCCGGTCCTGGCGCTACTTGGCC
ACCGAACGAAGGTGGCGCGAAACTTTGTTGGACAAACGGCGCCACAGGTG
GAGCTTGTGTGGGGTGAGCGGGCGTTCCCCAAAGACCACCCATAGATGAG
AAACTAGGTTGGGCGGCGGGTGGTGGTGGTTGTACGGGTTGAATATTTTG
CGATTCAATGACACTCATACATTCTTGTTCGTTACTTTGAAAGGCGGTAA
TTTGTGGATTAGTCATCGCCATGGCGGCTTGTTTTGCAATCGACACTGTT
TCGTATTGGGCACATGCCATACCAGGCACAGCTTTGAATTGTAAGAGAGT
ACCAAAATGTTGACAGGCTGAACGGATCGCGTTGGCGTccatctgaaaaa
taaaaatcaacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065737-exon-scaffold_443-1491911889:50066..52063 | TCONS_00065737-exon-scaffold_443-1491911889:50066..52063 | Clytia hemisphaerica | exon |
| TCONS_00065737-exon-scaffold_443-1510915933:50066..52063 | TCONS_00065737-exon-scaffold_443-1510915933:50066..52063 | Clytia hemisphaerica | exon |
| TCONS_00065737-exon-scaffold_443-1575043694:50066..52063 | TCONS_00065737-exon-scaffold_443-1575043694:50066..52063 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_443 | supercontig | scaffold_443:50066..52063 . |
Blast
The following BLAST results are available for this feature:
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