|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065712 ID=TCONS_00065712|Name=TCONS_00065712|organism=Clytia hemisphaerica|type=transcript|length=2990bpRun BLAST on NCBI transcript from alignment at scaffold_443:109482..165657- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065712 ID=TCONS_00065712|Name=TCONS_00065712|organism=Clytia hemisphaerica|type=transcript|length=56176bp|location=Sequence derived from alignment at scaffold_443:109482..165657- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065712 vs. Swiss-Prot (Human)
Match: ENASE (Cytosolic endo-beta-N-acetylglucosaminidase OS=Homo sapiens GN=ENGASE PE=1 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 3.524e-83 Identity = 136/469 (29.00%), Postives = 213/469 (45.42%), Query Frame = 3
Query: 600 LVKHLTDEMHKSNNDAQVIWYDSVIKSGQLRWQNKLCADNRLFFDVCDGIFLNYNWSPIHLTESLAQAKQRKHDVYVGVDIFGRGCPGGGGWNTNKALKIIREHDLSAAIFAFGWVYEKLGESVYHINNEMFWELLSDDLYPHYINRLPMVTTFNRGYGHSLFKNGKKISNRPISNLSLTDMQPTFPTNRYQVISGCPIITELAYKTDDAYNGNGCLFFSGTFEDAEQTNDVMFRLFKTDLRLTKKEASQLTILLTYKNNSEYHAQPKLVLCRGDGDKMVLDSYDTISVQN-----------------RWQIQEHRHKLNQDI-HIKEIQLH------------LQSTNNGRGRFQFLLGEFKIIDASERNLDAEKPPTTQLTIEHKALNKNANDEN-----IEIEIQLSWQ-VDENARSYNIFCLNASACCAIQDITGKTHKIDSSKTDFFIGRAFASHYQIGHFLIK 1898
+++LT ++H+ V+WYDSV++SGQL+WQ++L NR+FFD CDG F NYNW HL L QA +R+ DVYVGVD+F RG GG ++T+K+L++IR+H S A+FA GWVYE L + + N + FW L L H I LP VT+F G G G++ + P +LS ++QP F +R + T +DA++G L G + +V RLF + K + + + YK L L GD + ++ + RW + R + H E+ L + F LGE +++DA+ +L A P +TI H +A++ +++ L W + R + I C + D G+ ++ + F+G AFA+ Y+I L++
Sbjct: 251 FLRYLTTQLHRQVPGGLVLWYDSVVQSGQLKWQDELNQHNRVFFDSCDGFFTNYNWREEHLERMLGQAGERRADVYVGVDVFARGNVVGGRFDTDKSLELIRKHGFSVALFAPGWVYECLEKKDFFQNQDKFWGRLERYLPTHSICSLPFVTSFCLGMGARRVCYGQEEAVGPWYHLSAQEIQPLFGEHRLGGDGRGWVRTHCCL--EDAWHGGSSLLVRGVI--PPEVGNVAVRLFSLQAPVPPK----IYLSMVYKLEGPTDVTVALELTTGDAGSCHIGGISVLNAETSSRHSLRPLRVPPTKLARWVGRCGRQLSGGWVQHCYEVSLRGCLLLDLLVCFSRPPGSREEESFTCRLGEIQVVDAA--SLLAPLPQVQAVTISHIRWQPSASEREGPPALLQLSCTLHWSFLLSQVRCFRIHCWGGMS----DDSPGR--ELPRPEMPMFLGLAFATQYRIVDLLVE 703 HSP 2 Score: 135.961 bits (341), Expect = 3.524e-83 Identity = 63/117 (53.85%), Postives = 78/117 (66.67%), Query Frame = 1
Query: 145 NRPKTLLCHDMRGGYLQDRFDQGYPSTDCYSFYHWHLVDVFCYFSHHFVTIPPVQWINAAHKNGVKMIGTIITEWDEGRKNLQKVLKSKE-AVEVFVKCLVGIATKMKFEGWLVNIE 492
RP+TLLCHDM GGYL DRF QG Y+FYHW +DVF YFSHH VTIPPV W N AH++GV ++GT ITEW+EG + + L E + + LV I +F+GWL+NIE
Sbjct: 121 QRPRTLLCHDMMGGYLDDRFIQGSVVQTPYAFYHWQCIDVFVYFSHHTVTIPPVGWTNTAHRHGVCVLGTFITEWNEGGRLCEAFLAGDERSYQAVADRLVQITQFFRFDGWLINIE 237 The following BLAST results are available for this feature:
BLAST of TCONS_00065712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.