TCONS_00065711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065711
Unique NameTCONS_00065711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065711 ID=TCONS_00065711|Name=TCONS_00065711|organism=Clytia hemisphaerica|type=transcript|length=1537bp
ttttttttaggaGGTGCTCAAAAGGATTTGATTTAGCAATATCCCGTGAT
TCCGATCAAAACATCCAAAAGGATAGCCGAGCAGTGAATCCtgaattttt
ctcaatttttttcttgaatttattTCTCATTTGCTTCAATCATTCATTAG
CGATGCTTAAACCAAAGGTTTTGTCAGAAGTTTTGGGACAAGCAAACTCA
GATGGTGTCATCAGTACAATGCTTTTAAACAATGAAGGATCTTTGTTGGC
GTATGCTGGCTCTAATGTGAACAAGGACTCAAAGATTACAGCTGCTGTTG
CTTCCAATATCTGGGGTGCTTATGAGAAAGGAGGAAAAATGGCATTTAAT
AATGAAGGCTTAAGAGTTATGTTTATGGATTGTGAGGAAGGAAAAGTTGC
TGTTACGAAAATTTCTGCTGTTTTATTATGTATGTATGCTCAACCGACCG
TCGGCTTGGGGATGTTAAAGTTTAAGATGGAAAAATTGGCTGAATATCTA
CACGAACCATTGAACAACTCTTTAGCTTAACAAACCATTCATCACATTAC
AATTAGTCTCACTATTAAAAAAAGtcactCACAGCAAACACCAAACGAAA
ACCCTTTGAACCATGCACGATGAATGTTACTTACGAGATTCCACAGGCAT
CGACAATTGGCAAAACAGAACTTTGTAGTAGACATCTTTTTCCAAGAATG
GATCTTAATAGACTGATTGACTACCTACAAAATGCatttttaatattatt
tgtATGTAAGTAAAAGGCGCTTTGATGTTTTagtgttttgtttcgagagt
atTTCCTATCCTCAATTATGATGATGTATTAAGCTTCCTATTAGGTTATA
AATAATACAGTTAAACCTCCATAATTAGACTCCTcaaactcgaatgtctc
cttaactcgaacaagttttaaggacccttcagttaacaatgccttataaa
ccttactccttAGCTCGATCAAATATGCTTTCCCGTGCATTTTCGAATTG
TGGAGACTCCATTGTATACttaacaatagacgatatcggcttaacgaaat
tctccccgaatgattacccatgatgcattgcgcaaaaaaattcagtaagt
caatattgtccgtgaatttttttgcgcaatgcatcatgggtaatcattcg
gggagaattcctAAAGCAGATATCGTCTATTGCAACTATTTGATAATGGT
ATTATGCTATTGATTGCTATTACTTTGGGGTCATTCCATCGTGACCAACC
AATTTTTGGACCAATATACTATCGGAAAGTATTCGAATTCCCCTCTCaaa
ttaaaaccttatttttGACAAATAAACATACCTTTTATTCAAGATACGAC
ATCCTCTTGTTTGTGTTCAGGAAGAAACAATATTTGATATATTCTAATgg
ctataaattttgaaaaagtatttttcaagaattttttttaattaattaat
tttatagtTATTTCATTTCTTAGAAATTGTTAATTGTCTTCATCagttca
tttgtttttcaaTACGATACATAATATAATTTATAAC
Run BLAST on NCBI

protein sequence of TCONS_00065711-protein

>TCONS_00065711-protein ID=TCONS_00065711-protein|Name=TCONS_00065711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
FFRRCSKGFDLAISRDSDQNIQKDSRAVNPEFFSIFFLNLFLICFNHSLA
MLKPKVLSEVLGQANSDGVISTMLLNNEGSLLAYAGSNVNKDSKITAAVA
SNIWGAYEKGGKMAFNNEGLRVMFMDCEEGKVAVTKISAVLLCMYAQPTV
GLGMLKFKMEKLAEYLHEPLNNSLA
Run BLAST on NCBI

transcript from alignment at scaffold_443:97304..108192-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065711 ID=TCONS_00065711|Name=TCONS_00065711|organism=Clytia hemisphaerica|type=transcript|length=10889bp|location=Sequence derived from alignment at scaffold_443:97304..108192- (Clytia hemisphaerica)
TTTTTTTTAGGAGGTGCTCAAAAGGATTTGATTTAGCAATATCCCGTGAT
TCCGATCAAAACATCCAAAAGGATAGCCGAGCAGTGAATCCTGAATTTTT
CTCAATTTTTTTCTTGAATTTATTTCTCATTTGCTTCAATCATTCATTAG
CGATGCTTAAACCAAAGGTTTTGTCAGAAGTTTTGGGACAAGCAAACTCA
GATGGTGTCATCAGTACAATGTGAGTATTTCAGCTTTTAAATGTTCACCA
CCACAAAGCCAAAGAGCAAAAGCTATTCAAAAAAAAGTTTTGCTGAATTT
TGTTTTTTGGAGGTGCGTGTTGGCTTGACACTCGGATGTATGGCCTGAAC
TTTTTCAGGTCACTTGGAAATTTTGAACTTAAAAAAGTCCCAAACATGAC
CTGAACTTGGCTTGCACATATTTGGGGCATGTTTTTGCTTTGGGACACAG
GCAGGCAGTCAGGCACATCCTGGCAAATGAACGGGGTATTTTTCACTTGA
TTGGTGGCAAATGCAAGGGGTCAAAAACAAAAGTGATGTAATAGCACTGA
ATACCCCACGCAATTGAACCGGGTTGGAAATATTTTGCTTCATTTCAAAG
AACTGCATAGATGAAATTTTTTTTCCATGGGTCAATTTTTTATTCGAAGA
TTGAAGAAACTTTTAATGAAAAAATAAAGTTCCCAGTTTTCTTCCTTTTT
TCCCATTTTCAGTTTGAAGTTCATTTTTATTCATTTTCACGCTTTTAGCC
TGAGACGTCCTATCTCATATCATTTACACTGGGTGACGAATACCCCATGC
AAATGCTCACCCCGTTCATTTGCCAGAATGTGCCTGACTGGCAGGCTAGC
TCTAAAGCTCTACAACAGCATCTAATAACATGAAAACCAGAATATGAGTC
TTGCTTCAATGGGAATCAAAACTTTAAATTGCACTTACAAACATCAATAT
GTCAGATCTAACAAAATTAATAACGGCACTGTCATCATTGACAGTTTTCT
GTCAAGAGCCTTGTAAACATATTCCAACAACTTCCATCAAAATGATCTAT
CACAGCTAAGTCTACCATTTTTAGCGCAGTCCGAGGATTGAGCCGAGAAC
GTTTGCAGAACGCCTGCTAGCTCCCGTACGGGTGAAAAACTTTAATCCGT
CAATCATTTTCTCAAGCAAAGAGTACGCAAAGCGATTATAGCTTTACGAC
AGAGGGGGGGTCAACATTTATAATACCAACCCATAGCCCAAAAACCCGAC
TTTTGACCTTTTGAGCTAAGTTAACACCACCACCCCAAAATTGGTATCGA
TACCAACTTGAAAATCATAATTTTCAGAAAAAGGGGGGACCCACCCCCTT
AATTTGGTATCGATACCAACATGATTTTTTGAATTTGACAGTGGAGGCTA
ACATGCATAGCCCTCAAATGAATGACCTGGCAGGTCATTAAAATACAACT
ACGCAGCCCTGCTCGCATATTTACTCTACCATTTTATTTTTAATTTAACT
TTGTATTTTAATGACCAGCCAGGTCTTTCATTTGAGGGCTATGCATGTTA
GCCTCCACTGATGCAAGTTACCCAATCTCACGGTACCAATACCAATCTGA
CAAATTTGAGTTTAAAAGCTGTTTAAAGGGGACCCATCCCCTCCCACACA
AACAGGGTACTAAGAGAAACTTCAAAAAAACTCATTTTTGAAATACTCTT
TCTTCAACACAACACAAAAAATGTCATTATACTAAAATAGAAAATGACTG
AAAACTGACAATATGATAAAAACAAACCCAATGAAACTTTTGAATGTTTT
AAAATTTCGAATATTTTTTTCGAAAATTCGAATGTCTTTCAAATGTACTT
TGCACATTCGAAATTCGAATTTTCACAAAAAAGAAAAAAGAAAAATAAGA
TTTATTTACTCTGGTTTGTTTGATACTTATACTACATCCTACTTGATCAA
GTTTGTTTTGGTGTTAGAGTTTTACCTTTATACAAAAACGACCAAGATGA
TAAAGAAATACAGACTGTTTAATTTTTTCGGGGTATTTTCTAGCTATAAG
GGCAATAATTAGGAAAGTTTTGCTGTCATTTTGATATGGATACCAACTTT
CTGAATCATATTATTTAAAAAAAGGGGTACCCACCCCTATTTTGGTATCA
ATGCCAACCGAGGATAACTCTTTTTTTCTAAAAAAGGGGGACCCACCCCC
ATCAATACCAACTTGACTTTTCAGACTTTTAAAGGAAAAAAAGACACCAC
CACCCGGCTATTGGTCTGGTGGTTATCATTATACTTTTATTTTGATTCCT
AGAACTTTGGAAAAAAAAAGGAAAAATAGAAAAGTTGTATTTTTACTGCT
CTTTTCACATACTGTACTAAATAAATACGTGAAAGATCTTAAACTATGTC
GTGTCTTTTTGCAAACTTCAAAAAACTGATTTTTGCCCTGCTTTTGCGGG
ACTTTAGCTTAAGTGCTTGCGTGCAGCATAGGGTACAAAGTCCAAATATG
CGTTTCCTTACAGCATTGAGCTTAAAGCCCAAAGTGCTAGAGTAGAATCT
CTAACCTTTCTCAGGCAAGAAAGAGTGTTTTTAAAAGCCAATTATTTCCC
ATCAAGAATGTGCCTAGAATGCACCGCAATCATTACGATGGATTGTATAT
CTAGCAGTTCATTTGTTTTTTGAGGACTGCATTTTTAAAGTTACTTCATC
TCCCATCCAAGAGTCTCAAGTCTAGCCCTCCAGGCTTTGAAGTCAATTTC
TTACAGATACTCAACATGGATTTTGCAAAAAGATATCATGCAAGACTCTT
CAAACAATTTGATTCATTAACAAAATCCTTCACTTTTGTTCGATTGGATT
AAGGTTACAGATAGGGCTCCTTTGAAGAAAATCTTTTTTTTACATCAAAA
AATTTTTTTCTGCTGTAAAAGATTCAACATTTTACAGACCATCGAATGAT
GCATCTCCCTAAACCTAAAAATGTATCAAAATTGCAAAAAATGCTAAAAA
CATTATCGATGTATAATCCCTATTGATTGAGCCTTTTATTCGAATTGTAA
AAGAAAACTGTAAAGGGAAGCGACGATTATTTCGATATCCCTATTATAAA
GTCTTACAATGGAATAATGCAGGGCTGCAAATAAATATTTTTAGTCAATC
GAATAGGCTAAGTAAGAGACAAGGGTGTAAGAGATTTATTTTCAACTCTC
AAGTTAATGGTTTATTCCTTTTTTCATTCGGACATCACGACCGACACAAA
AGATTTTCAGTCGGTCAAATAGCTTTATCAGTCGGACATTGACCGATGAC
CGACGCTTATTTGCAGCCCTGATAATGGTCTTTTTACTTTTCAATAAAAG
AGGGGGAATTTTTCGGTAAAGATGAAAATATTTTAAATTTTGAAATAACT
CAGAATCACAATTTCTTCAAAAATCCAGTGTACATACCAACTTTGAAAGG
TTACTCTACAAGATCTGGTTGGTCGATATTTCAGAAACCTATGTCATTCT
ATTCAGAAAAGATTGAATAGCAAAACCCTGCCTCCGATTGTTAATTCGAG
GTTTTGTTGTGGAGAAAATCGCTTTAAACGTGAAAAACCTGTTTTTTAAC
ATCGCATAACATGAAAAGTAAATATCTTTTGAATANAACGTGAAAAACCT
GTTTTTTAACATCGCATAACATGAAAAGTTAAATATCTTTTGAATAGGGC
GTGTAAATGATAAAGCGGAGCATGGTTTTGTAGGGGAGAACAAGGGCTTT
CGAATACAAAAGGTTTCATTGAAAAATATTCAGTAGATTTGAAGAGTAAC
TCGTCAAAGTTCAAAGTTTGTCTTTTGAAATTGCGTCATAATTCCAAATT
AGAAAAATATGTCGAAAAAGTAATTACATATTTAGAAAGCCATTGAATTG
CACTTTAACCACTCCAGTCCAATTTCATCAAAGAAAGGATGCTAAACAAT
TAATGATTAAAAATAATTTAAAAAATGATTTAAAAATAATCAAATTGACC
TATCTGTAACCTTAAATTTTTCTTCAATTAAAGAAAACTAAGGCAACCTT
TTTTCGTAGCATTATATACTGGGTGTGATTTGATATTGCAGGCAGTAGCA
GAAGAATTTGTTTCGGAATTATTCAGAGGAAAGCCTAACTTAAAATTTGG
TGTATTACTTATTAATTTTTCTTCATTGGTTCAAATATTATTATGTTCAA
AAACCTAAAATGTCAATTTTAAAAAATGTCAAAAAAGGCTAAAAACAAAG
GTATCACTTTATGAGAGAAACGACTTTTCTTTTACCAAAACATTAAAGTA
CAATGTCTTGCTCCTTGTAACACTCTTTATTTTTTCTTTATCTCTTGTCT
TTTTTTACTTCTGTTTTTCCCTTGGGCATAAACAAGATGCCGAATGCTTC
AAACCCCACAGAATTTTCAACATCTTCCCAAGAGTTTCCAAAAGTTTTTC
TGTGTGTGCACCATCGTTGAGAAAGGTGGAGATTTTTGAGAAAAATGCTT
CATTTGAACTATTGCAGCTCATCTCGACTCACAGATGATGGAATGTATTT
ACAGGGATGCATAATCTTGTAAATAAGTGCTTTTTACATAATGAAAATAC
ATTTTGTGATGCATAAAATCATTTTGGGCCATTTATCACAATCAATTTAA
TACTCTCGCTTTTCGCCTTTTTCTGCCATTTTTTAAAATTGATATTTTAG
GTTTTTGAACATAACTTTTGAACTAATGAAGTAAAATTAAAAAGTAACAC
ACCAAATTTTAAGTTAGGCTTAACTTTCCTCTGAATGATTCCGAAATAAT
CTTTGAGAAATCTCTTTTCTACTGCCTACAATATCAAATCAAAGAGGGTA
ACTTATTAGTGGTAAACCCGGTAGAATCTCTTGAAAAGTAAGTTTTTAGG
CAAGAGGTAACTCTGAACGTGATGTATCCCAAATATTTCAAGATAGATTG
TATCTTTTTATCATTTTGAGCATGGTATTTCCAACCACTGAAGTAAGGTT
TAAAAAATCTTTGAGAAAGTACCAAAATAAATATTCCAAGGATGAAGACA
GACAGTCCTTAATAAAGAAGAACCTAACCTAACCTTAGTTAATCTATGCT
AACACTCATCCCTATGACTCAATTTTTAACTTAACATCATCTCATTGAAT
GATTTTATCAAGTGCTCCTCAGCTGCTACAATGGAAACTATTATTAAAGA
TGAATCAAGAACTTCAAAATCTCTCAATGTAGAAGTCAAAACCTGAAACT
TGTAGCTTGAAATATGAAAAAAATACTTTAGAAGTTGAGATATTGTTTTT
AGAAAAAATGTGACTCTGTTGCACACATTCTGTTTTACTTTGATTGACTT
CAGCTGTTTGACATATTACTTTCTTGTGTTCTGATCACTTCTTTTGTAAT
ATTATTATCCAAAGCTCTCACCTGATTCAATTCATTTATTGATTTTAATA
TTATAAAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATCGGTAAAATCTCGG
AACGAGTAAAATATCGAGTATTGCACGAGAAGTCATGTGATAACTAATTT
ATTGTCGACTCAAAAAAAATGTCCTCTTTTTGTTTCAAAACTTACTTCCG
CCTTCTTCTGCTTCTGTGTAGTTTGGAATGTTTTTATTCGAAATTCTAAT
TCGAACGTTAGATTCAAACAAAAACATTTGATAACTTCCCGCTGAAAATA
TTCACACAAAAACAAAACTTTTCGATCATTTTCGATCCAGAAGTTTTGTT
TTGAAAAGTTGCAGATTTTTCAGAGATGTATTTGAAAGTTTCTAGATTGA
TAATTCAAAATGCAGATGATGTACAGTATTGTTTCGATGGAGAAGAAACC
CTCCATCATTGGATTAATCAGATTGATAACATTCAGTCTTTTTCTATTTT
TTTGTTTCGATGACATATGGCTATGGGAAAGAATAGCAGAGGAAAGGAGT
CCCACGATGGAAATGTATGCTTGTAATAATGGTTAAAGAACAACATTTTT
TCAACAGCAAAACAATTTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAAT
CACTCGTCATTTGGTTTAATACAAGACATTACACTTCCCTTGTTATGTTA
TGAGAAATTTTATTGGCCAACATTCAAGAATCTCAAGTTATTTTGTGTGC
ATTGATAAAAAACTTTTTGGTTATCACACGGACAAATTTGCCAAAAGTTG
AAAATATTTGGGTGGTGTCAAGTAGTTTTATAATTTCTTAGTTCATCAGA
TTTGATTTTAGTGTCTTTTATGGAAGAACTCCAAAGTAAAAGTTAATCTG
AACATATTTTTGTTGCGTTTTAACATAATTTGTTGACATAATTTTGGCTT
GTACTTAATTTGGCAGATGGCCAAAATATGATTTTTGGCGGGTATTTAAT
TTGGCAATGATAGAATTTGTATAATTTGGTCGGAATTTTGTTTGCAAGAT
GGGGAAATTTTAGGCACTTGTAAATCAAAACTTATTGGTATTTTAACATT
TTTTACTTCAAAATGCTTTCATAGAATTTCTATCTTAAAAAGATTTTTTT
TTCAAATTTGGGGGTATTCAATTTGGCTGATTTACCAAAAACCGCCAAAC
CTGCCAGATTTAATCCCCACCAAAATTAATACACTTAAAGTTTTTAAATA
ATATTGATATTAGTGATCGAGGCTAAGGTACCAGTTTATATATTCAAAAT
ATATATTATATTCTTTTTGTTAGGCTTTTAAACAATGAAGGATCTTTGTT
GGCGTATGCTGGCTCTAATGTGAACAAGGACTCAAAGATTACAGCTGCTG
TTGCTTCCAATATCTGGGGTGCTTATGAGAAAGGAGGAAAAATGGCATTT
AATAATGAAGGCTTAAGAGTTATGTTTATGGATTGTGAGGTTTGTTTTTC
TACTTTTGATACAAGTTTTTGAGGTTTGGTTCACTTATATACATTCCCAG
GATGCAGAGGATATTTTCCCATAATCTACCCAGGACATTTCTATCTTTCA
CCCGACATGTCTTTTAACCCTGGAAAAGTATCAAATGGCCCCTTAGATTA
AAAATGCTTCTGGATATTGCAAATTTACCCGGTGGATATGATGGTTTTTC
AAAGTATTTTCCCTGGACAATATATCCCCCAACTCCTATGTACGGTTTTT
TTTTTGGAATTAGCCCAATGCTGAATCAACTAATGTGTAATATTAATATT
TTTGTTTGGATTTATTTCTAGGAAGGAAAAGTTGCTGTTACGAAAATTTC
TGCTGTTTTATTATGTATGTATGCTCAACCGACCGTCGGCTTGGGGATGT
TAAAGTTTAAGGTGAGCAAACGTATTATACCCAGTCAAAGTAGCAAATCA
GTTCTTTGAGGATTCATAATACATTGAAAATTTAGCACGCTAAAGATATG
TAAGTGGATGGAAATATTGCTAGTAAAATAAATGTTTCTATCTGTTACTT
TCCTCTTGTTGGTCTCGAGATGTTGCCTCTTGGGAAAACTATTCTCTATN
TTTCCTTTTGTTGGTCTCGAGATGTTGCCTCTTGGGAAAACTATTCTCTA
TTACATCATGCATTGCAGTGTTTAAATATGCCTTACACTAACGCGTAACA
TCTGACAACATGTTGTCGTGAGTAACATCAAGAACTATTCTGATAAAAAA
AAAGTATACAATTATTACATCTATGATGCAGATGAGATGGAGTTTTTATA
AGATACTTTAACAATTGGTCATTTGAAGTAATAAAGTAGCAAAGTTGTTT
TATTACTGGTTAACGACCAACCAAATCAAATAAGAGCTTGTAAAAGCTCC
ATCTCGTCCCCTGTGATGTGACATACACGTTTTTTTATAAGAGCATCCAA
TTTTTTAAAGCCATCGGATGTTCCTAACTTTTTGAGTCTTAAGCCTAAAA
ATGTTCTTAACATGTTCTAATTTTCACCATTTTCCTAAAAATGGGGTGTT
TTAGAGTCCGCAAAGCCTTAAATGTTCTTAACTTTTTCTTAATATTTTGG
GCATCGAAGCCTTATGTTCTTATAAAAAAACATTTTTGTGAATATTCTTT
CTTCTTGATTTTCAGATGGAAAAATTGGCTGAATATCTACACGAACCATT
GAACAACTCTTTAGCTTAACAAACCATTCATCACATTACAATTAGTCTCA
CTATTAAAAAAAGGTATGTGTATGTTTCAAACTCACCAAAGATTCTGTAA
TTTTGAAATTATTGTGTGTCCCAAAAAAAAGCGGGCAAATTTCTATATAA
AGTAAAATCTTTATTTAAACTGGGTTTAGAATGATTAAAATAAGATCCCA
ATTCTCTGTTCAAACAATAGATATTCAATGCCTAAGATGATTGAATAGGT
TTTGAGATTGAAATATTAAGTAAGCAAGTCAATTTCCGCTTTTTTTTGGG
ACACATTGTACATTCTAGCCTTACTACAAGGCGGTCACAGCATCGGTCAA
AAAGTACTGATTACCCTGCTTAGTATGTTATGTGACGTCCAAAAAGGTAC
TTTACAAAGGAGGGACACCAAAATCGTAAGGTTTTATTTAATACGTAAAA
CAGCCAATCCATCCTAAAGCGATACTTTAATGGGATAAAATTTCGTGGAT
TTCGCAGATTAAGGTGTCATCCGCGAAATTAAGTCCCAATGGAAATTTGG
AAAGGCCTTTATTTTTAAACAAAACTATGAATTTCCAAATAAACTACTTT
TAAAATTACTGGTATCAAAGAAGTGCTTACAGCGCGTATTTCAACAACCA
GTATGCATGATTTGGCAGAAGAAGGCACAAAATCGTCAACATAATTGTCT
CCAAATAGGGCCATCCGTGAAATTAACTCCCCGCGAAATCTTAAAGGGCC
TATTTGTTTCACTTACTATAAATGCTGTAGATGCTATCTGCTAATAGTGC
TATGAAATTCCATGAAAACTTTGAAAATGATAGTAAATATTGCAAGTTTT
GTTGTCTGCCATCTTGATGATCCCTGGTTGTACTATGAATTTTAAAAAGT
ATATTTGGATCCATTTTTTATTCTCAGCTGTGTTGCCACTATCCCGCCAT
TATGAAAGTAACTGCTATTTTGAATCAGATATAGACCTGTGCGTGGAGCA
AGCTACAGTTTCAGCTCTTCACTTCTTTAATTTAATTAGTTCAAAATCGG
CAATCAGGCTAATAAAATATCATCCAGTCTGATTTTAGATGCAATTTTTA
CTGTGAAGAAATTGCGATTTTGCTTTGCTTGCAGAAGGTTGAAGTTTTTA
CTATTTTTGCTGAAAGGGAGTTTGCATGTTTATTTACAAGAAGTGCAACA
GATTTGGACAGAAAAAATTGAAATGAGAGCACTTACAGTAAATGTAGCAA
AAATAGTGATGAAACAAATAGGCCCAAAACTTCGCAGACGAGATTGCGAA
ATTTAATTCCCGTGAAATGTATAGCACTTTTAGGTCGGCAAAAGCCAAAG
TTACCGAATGCCGACGCGAATTAGAATGGCTGCTTATTGTGTCTTACTTA
TGATTTTATTAAATTTTGTTTTTAAGTCACTCACAGCAAACACCAAACGA
AAACCCTTTGAACCATGCACGATGAATGTTACTTACGAGATTCCACAGGC
ATCGACAATTGGCAAAACAGAACTTTGTAGTAGACATCTTTTTCCAAGAA
TGGATCTTAATAGACTGATTGACTACCTACAAAATGCATTTTTAATATTA
TTTGTATGTAAGTAAAAGGCGCTTTGATGTTTTAGTGTTTTGTTTCGAGA
GTATTTCCTATCCTCAATTATGATGATGTATTAAGCTTCCTATTAGGTTA
TAAATAATACAGTTAAACCTCCATAATTAGACTCCTCAAACTCGAATGTC
TCCTTAACTCGAACAAGTTTTAAGGACCCTTCAGTTAACAATGCCTTATA
AACCTTACTCCTTAGCTCGATCAAATATGCTTTCCCGTGCATTTTCGAAT
TGTGGAGACTCCATTGTATACTTAACAATAGACGATATCGGCTTAACGAA
ATTCTCCCCGAATGATTACCCATGATGCATTGCGCAAAAAAATTCAGTAA
GTCAATATTGTCCGTGAATTTTTTTGCGCAATGCATCATGGGTAATCATT
CGGGGAGAATTCCTAAAGCAGATATCGTCTATTGCAACTATTTGATAATG
GTATTATGCTATTGATTGCTATTACTTTGGGGTCATTCCATCGTGACCAA
CCAATTTTTGGACCAATATACTATCGGAAAGTATTCGAATTCCCCTCTCA
AATTAAAACCTTATTTTTGACAAATAAACATACCTTTTATTCAAGATACG
ACATCCTCTTGTTTGTGTTCAGGAAGAAACAATATTTGATATATTCTAAT
GGCTATAAATTTTGAAAAAGTATTTTTCAAGAATTTTTTTTAATTAATTA
ATTTTATAGTTATTTCATTTCTTAGAAATTGTTAATTGTCTTCATCAGTT
CATTTGTTTTTCAATACGATACATAATATAATTTATAAC

Coding sequence (CDS) from alignment at scaffold_443:97304..108192-

>TCONS_00065711 ID=TCONS_00065711|Name=TCONS_00065711|organism=Clytia hemisphaerica|type=CDS|length=2112bp|location=Sequence derived from alignment at scaffold_443:97304..108192- (Clytia hemisphaerica)
ATGGAAAAATTGGCTGAATATCTACACGAACCATTGAACAACTCTTTAGC
TTAAGAAGGAAAAGTTGCTGTTACGAAAATTTCTGCTGTTTTATTATGTA
TGTATGCTCAACCGACCGTCGGCTTGGGGATGTTAAAGTTTAAGGCTTTT
AAACAATGAAGGATCTTTGTTGGCGTATGCTGGCTCTAATGTGAACAAGG
ACTCAAAGATTACAGCTGCTGTTGCTTCCAATATCTGGGGTGCTTATGAG
AAAGGAGGAAAAATGGCATTTAATAATGAAGGCTTAAGAGTTATGTTTAT
GGATTGTGAGTTTTTTAGGAGGTGCTCAAAAGGATTTGATTTAGCAATAT
CCCGTGATTCCGATCAAAACATCCAAAAGGATAGCCGAGCAGTGAATCCT
GAATTTTTCTCAATTTTTTTCTTGAATTTATTTCTCATTTGCTTCAATCA
TTCATTAGCGATGCTTAAACCAAAGGTTTTGTCAGAAGTTTTGGGACAAG
CAAACTCAGATGGTGTCATCAGTACAATATGGAAAAATTGGCTGAATATC
TACACGAACCATTGAACAACTCTTTAGCTTAAGAAGGAAAAGTTGCTGTT
ACGAAAATTTCTGCTGTTTTATTATGTATGTATGCTCAACCGACCGTCGG
CTTGGGGATGTTAAAGTTTAAGGCTTTTAAACAATGAAGGATCTTTGTTG
GCGTATGCTGGCTCTAATGTGAACAAGGACTCAAAGATTACAGCTGCTGT
TGCTTCCAATATCTGGGGTGCTTATGAGAAAGGAGGAAAAATGGCATTTA
ATAATGAAGGCTTAAGAGTTATGTTTATGGATTGTGAGTTTTTTAGGAGG
TGCTCAAAAGGATTTGATTTAGCAATATCCCGTGATTCCGATCAAAACAT
CCAAAAGGATAGCCGAGCAGTGAATCCTGAATTTTTCTCAATTTTTTTCT
TGAATTTATTTCTCATTTGCTTCAATCATTCATTAGCGATGCTTAAACCA
AAGGTTTTGTCAGAAGTTTTGGGACAAGCAAACTCAGATGGTGTCATCAG
TACAATATGGAAAAATTGGCTGAATATCTACACGAACCATTGAACAACTC
TTTAGCTTAAGAAGGAAAAGTTGCTGTTACGAAAATTTCTGCTGTTTTAT
TATGTATGTATGCTCAACCGACCGTCGGCTTGGGGATGTTAAAGTTTAAG
GCTTTTAAACAATGAAGGATCTTTGTTGGCGTATGCTGGCTCTAATGTGA
ACAAGGACTCAAAGATTACAGCTGCTGTTGCTTCCAATATCTGGGGTGCT
TATGAGAAAGGAGGAAAAATGGCATTTAATAATGAAGGCTTAAGAGTTAT
GTTTATGGATTGTGAGTTTTTTAGGAGGTGCTCAAAAGGATTTGATTTAG
CAATATCCCGTGATTCCGATCAAAACATCCAAAAGGATAGCCGAGCAGTG
AATCCTGAATTTTTCTCAATTTTTTTCTTGAATTTATTTCTCATTTGCTT
CAATCATTCATTAGCGATGCTTAAACCAAAGGTTTTGTCAGAAGTTTTGG
GACAAGCAAACTCAGATGGTGTCATCAGTACAATATGGAAAAATTGGCTG
AATATCTACACGAACCATTGAACAACTCTTTAGCTTAAGAAGGAAAAGTT
GCTGTTACGAAAATTTCTGCTGTTTTATTATGTATGTATGCTCAACCGAC
CGTCGGCTTGGGGATGTTAAAGTTTAAGGCTTTTAAACAATGAAGGATCT
TTGTTGGCGTATGCTGGCTCTAATGTGAACAAGGACTCAAAGATTACAGC
TGCTGTTGCTTCCAATATCTGGGGTGCTTATGAGAAAGGAGGAAAAATGG
CATTTAATAATGAAGGCTTAAGAGTTATGTTTATGGATTGTGAGTTTTTT
AGGAGGTGCTCAAAAGGATTTGATTTAGCAATATCCCGTGATTCCGATCA
AAACATCCAAAAGGATAGCCGAGCAGTGAATCCTGAATTTTTCTCAATTT
TTTTCTTGAATTTATTTCTCATTTGCTTCAATCATTCATTAGCGATGCTT
AAACCAAAGGTTTTGTCAGAAGTTTTGGGACAAGCAAACTCAGATGGTGT
CATCAGTACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041168XLOC_041168Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065711-exon-scaffold_443-1575043694:107973..108192TCONS_00065711-exon-scaffold_443-1575043694:107973..108192Clytia hemisphaericaexon
TCONS_00065711-exon-scaffold_443-1575043694:100904..101069TCONS_00065711-exon-scaffold_443-1575043694:100904..101069Clytia hemisphaericaexon
TCONS_00065711-exon-scaffold_443-1575043694:100482..100571TCONS_00065711-exon-scaffold_443-1575043694:100482..100571Clytia hemisphaericaexon
TCONS_00065711-exon-scaffold_443-1575043694:99630..99727TCONS_00065711-exon-scaffold_443-1575043694:99630..99727Clytia hemisphaericaexon
TCONS_00065711-exon-scaffold_443-1575043694:97304..98266TCONS_00065711-exon-scaffold_443-1575043694:97304..98266Clytia hemisphaericaexon
TCONS_00065711-exon-scaffold_443-1510915933:107973..108192TCONS_00065711-exon-scaffold_443-1510915933:107973..108192Clytia hemisphaericaexon
TCONS_00065711-exon-scaffold_443-1510915933:100904..101069TCONS_00065711-exon-scaffold_443-1510915933:100904..101069Clytia hemisphaericaexon
TCONS_00065711-exon-scaffold_443-1510915933:100482..100571TCONS_00065711-exon-scaffold_443-1510915933:100482..100571Clytia hemisphaericaexon
TCONS_00065711-exon-scaffold_443-1510915933:99630..99727TCONS_00065711-exon-scaffold_443-1510915933:99630..99727Clytia hemisphaericaexon
TCONS_00065711-exon-scaffold_443-1510915933:97304..98266TCONS_00065711-exon-scaffold_443-1510915933:97304..98266Clytia hemisphaericaexon
TCONS_00065711-exon-scaffold_443-1491911889:107973..108192TCONS_00065711-exon-scaffold_443-1491911889:107973..108192Clytia hemisphaericaexon
TCONS_00065711-exon-scaffold_443-1491911889:100904..101069TCONS_00065711-exon-scaffold_443-1491911889:100904..101069Clytia hemisphaericaexon
TCONS_00065711-exon-scaffold_443-1491911889:100482..100571TCONS_00065711-exon-scaffold_443-1491911889:100482..100571Clytia hemisphaericaexon
TCONS_00065711-exon-scaffold_443-1491911889:99630..99727TCONS_00065711-exon-scaffold_443-1491911889:99630..99727Clytia hemisphaericaexon
TCONS_00065711-exon-scaffold_443-1491911889:97304..98266TCONS_00065711-exon-scaffold_443-1491911889:97304..98266Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065711-proteinTCONS_00065711-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_443supercontigscaffold_443:97304..108192 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.3967	61.4673	57.7932	60.515	25.3404	22.3053	34.1167	35.0797	60.9046	48.3133	43.391	43.6407	26.8196	25.5724	48.398	51.542	54.59	50.002	30.2434	39.4715	35.2005	34.0454	48.8423	47.1264	23.8405	27.7179	46.0107	35.1931	67.2316	57.7291
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004942Roadblock/LAMTOR2_dom
Blast
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BLAST of TCONS_00065711 vs. Swiss-Prot (Human)
Match: LTOR2 (Ragulator complex protein LAMTOR2 OS=Homo sapiens GN=LAMTOR2 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.997e-44
Identity = 70/120 (58.33%), Postives = 95/120 (79.17%), Query Frame = 3 
Query:  153 MLKPKVLSEVLGQANSDGVISTMLLNNEGSLLAYAGSNVNKDSKITAAVASNIWGAYEKGGKMAFNNEGLRVMFMDCEEGKVAVTKISAVLLCMYAQPTVGLGMLKFKMEKLAEYLHEPL 512
            ML+PK L++VL QAN+ GV ST+LLNNEGSLLAY+G   + D+++TAA+ASNIW AY++ G  AFN + L+ + MDC EG+VA+T+++ +LLCMYA+ TVG GMLK K + L +YL EPL
Sbjct:    1 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYG-DTDARVTAAIASNIWAAYDRNGNQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPL 119
The following BLAST results are available for this feature:
BLAST of TCONS_00065711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LTOR21.997e-4458.33Ragulator complex protein LAMTOR2 OS=Homo sapiens ... [more]
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