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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065707 ID=TCONS_00065707|Name=TCONS_00065707|organism=Clytia hemisphaerica|type=transcript|length=1178bp
gaaactatggcattataattatgaaaaagatttcaatgcTACAAAATAGT
TTTCTTGTCATACTTATTATCTGCTTGACAATAGTAATAAAAGAATATTA
TTTACCAAGCTTTATATGGACAAATCAGCAGCACCCTTTGCTAAAAATCA
TCCATCGAAGTCCATTATACCcaaataaactttgtttgagcGGCTACTAT
AAAAATATTCTGCTACTTGTTAATTTTAATCATCCGTTTTACGACAATAT
CCCAATGATCAGGTCACTTTACGAGCGAGCATTTCCTAATATGGTATTCT
ACGGTAcaaaaaaatctcgaaaattcaACGTTCACAAAATCGAGTCACAC
AAAGGATATTTCAGTTATATTGCTTTGGCAGACGCAatggaaaaatatac
aaatttcACTGGCTATCTTTTAATCAACGATGACTTATTAATACACCCGT
GGTCACTTTTAAAACttgatcaaaataaaatttgggaAGGACCGAAATGG
CCAATCGCTGTTGCGAATTTGAGCGCGTTTGACCACTGGTATTGGTGGAA
CAGTCGATGGGGTTTAAAGAAATGTCTTTTAGCTCGACAATTAGCAATGA
CgaaatattcaaatttaataTCAACTTTACACGACCCTGAAAATACAACC
GATCAAAGATTAGATTGTTATCGCGGACGTGCTGATATATTTTACGTACC
TAAACACAAATGGAAAACTTTTTCCAAACTTTCAAAGATATTTCATGAAA
ATAATGTATTCTTAGAGATTGCTGTACCGACTATACTCCGAATGATTTCG
ACCAGCTCCGAAAGAGAATTCCTGGACGGGATTTACCTACCCGGGCGAGT
GAACTCTTCCGTTATCCGGGACACCCGGTATCTTTGGAGTCATTACCAGG
ATGATTTACATTTTATTCATCCGGTTAAGCTACGATACGGAGATGAAGGT
ACTTCTTTGAATCGTTTTGTTTTGGATACTTTTGTAAAGCCAAAATTtga
ttcaattttgaattgcaCAAGGAATTAAATTCTATTATTTTATCATGTTT
ATAGGTCCGTAATCTACTGCTATCTTTCCAAAAGTTccattcgaaatttt
tttatcagttCATAGGTTGCCCGGAATCTAGGCGATGAAAAGCAATCTAC
TGAATCCgttctttttgataaatttgat Run BLAST on NCBI protein sequence of TCONS_00065707-protein >TCONS_00065707-protein ID=TCONS_00065707-protein|Name=TCONS_00065707-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
NYGIIIMKKISMLQNSFLVILIICLTIVIKEYYLPSFIWTNQQHPLLKII
HRSPLYPNKLCLSGYYKNILLLVNFNHPFYDNIPMIRSLYERAFPNMVFY
GTKKSRKFNVHKIESHKGYFSYIALADAMEKYTNFTGYLLINDDLLIHPW
SLLKLDQNKIWEGPKWPIAVANLSAFDHWYWWNSRWGLKKCLLARQLAMT
KYSNLISTLHDPENTTDQRLDCYRGRADIFYVPKHKWKTFSKLSKIFHEN
NVFLEIAVPTILRMISTSSEREFLDGIYLPGRVNSSVIRDTRYLWSHYQD
DLHFIHPVKLRYGDEGTSLNRFVLDTFVKPKFDSILNCTRN Run BLAST on NCBI transcript from alignment at scaffold_443:46815..48287- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065707 ID=TCONS_00065707|Name=TCONS_00065707|organism=Clytia hemisphaerica|type=transcript|length=1473bp|location=Sequence derived from alignment at scaffold_443:46815..48287- (Clytia hemisphaerica)
GAAACTATGGCATTATAATTATGAAAAAGATTTCAATGCTACAAAATAGT
TTTCTTGTCATACTTATTATCTGCTTGACAATAGTAATAAAAGGTTTGTA
TTTCATCTATATTTTCATCTTCAAATTTCATCTAACTGTATTTTCTTCCT
GTAAAAGTTATCGAATTTCGATGAAAACTAATTTTTACACATTTTGTTCA
CATTCCACCTAATTTTACAAAAGTTCCCTATTAATCTGCGCTATTTTTTC
ACAAGCAACTCCAATTATTAGGTCAACCCTGGGAGCTTAGCATTCTAGCT
CATTTTCTAATTATAAGCTTTTTTTGCCATACATACAGCATGCAAAGTAT
AACATTTCAATATCATTCTATGATTTTTCTCTCTTCAGAATATTATTTAC
CAAGCTTTATATGGACAAATCAGCAGCACCCTTTGCTAAAAATCATCCAT
CGAAGTCCATTATACCCAAATAAACTTTGTTTGAGCGGCTACTATAAAAA
TATTCTGCTACTTGTTAATTTTAATCATCCGTTTTACGACAATATCCCAA
TGATCAGGTCACTTTACGAGCGAGCATTTCCTAATATGGTATTCTACGGT
ACAAAAAAATCTCGAAAATTCAACGTTCACAAAATCGAGTCACACAAAGG
ATATTTCAGTTATATTGCTTTGGCAGACGCAATGGAAAAATATACAAATT
TCACTGGCTATCTTTTAATCAACGATGACTTATTAATACACCCGTGGTCA
CTTTTAAAACTTGATCAAAATAAAATTTGGGAAGGACCGAAATGGCCAAT
CGCTGTTGCGAATTTGAGCGCGTTTGACCACTGGTATTGGTGGAACAGTC
GATGGGGTTTAAAGAAATGTCTTTTAGCTCGACAATTAGCAATGACGAAA
TATTCAAATTTAATATCAACTTTACACGACCCTGAAAATACAACCGATCA
AAGATTAGATTGTTATCGCGGACGTGCTGATATATTTTACGTACCTAAAC
ACAAATGGAAAACTTTTTCCAAACTTTCAAAGATATTTCATGAAAATAAT
GTATTCTTAGAGATTGCTGTACCGACTATACTCCGAATGATTTCGACCAG
CTCCGAAAGAGAATTCCTGGACGGGATTTACCTACCCGGGCGAGTGAACT
CTTCCGTTATCCGGGACACCCGGTATCTTTGGAGTCATTACCAGGATGAT
TTACATTTTATTCATCCGGTTAAGCTACGATACGGAGATGAAGGTACTTC
TTTGAATCGTTTTGTTTTGGATACTTTTGTAAAGCCAAAATTTGATTCAA
TTTTGAATTGCACAAGGAATTAAATTCTATTATTTTATCATGTTTATAGG
TCCGTAATCTACTGCTATCTTTCCAAAAGTTCCATTCGAAATTTTTTTAT
CAGTTCATAGGTTGCCCGGAATCTAGGCGATGAAAAGCAATCTACTGAAT
CCGTTCTTTTTGATAAATTTGAT Coding sequence (CDS) from alignment at scaffold_443:46815..48287- >TCONS_00065707 ID=TCONS_00065707|Name=TCONS_00065707|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_443:46815..48287- (Clytia hemisphaerica)
AATATTATTTACCAAGCTTTATATGGACAAATCAGCAGCACCCTTTGCTA
AAAATCATCCATCGAAGTCCATTATACCCAAATAAACTTTGTTTGAGCGG
CTACTATAAAAATATTCTGCTACTTGTTAATTTTAATCATCCGTTTTACG
ACAATATCCCAATGATCAGGTCACTTTACGAGCGAGCATTTCCTAATATG
GTATTCTACGGTACAAAAAAATCTCGAAAATTCAACGTTCACAAAATCGA
GTCACACAAAGGATATTTCAGTTATATTGCTTTGGCAGACGCAATGGAAA
AATATACAAATTTCACTGGCTATCTTTTAATCAACGATGACTTATTAATA
CACCCGTGGTCACTTTTAAAACTTGATCAAAATAAAATTTGGGAAGGACC
GAAATGGCCAATCGCTGTTGCGAATTTGAGCGCGTTTGACCACTGGTATT
GGTGGAACAGTCGATGGGGTTTAAAGAAATGTCTTTTAGCTCGACAATTA
GCAATGACGAAATATTCAAATTTAATATCAACTTTACACGACCCTGAAAA
TACAACCGATCAAAGATTAGATTGTTATCGCGGACGTGCTGATATATTTT
ACGTACCTAAACACAAATGGAAAACTTTTTCCAAACTTTCAAAGATATTT
CATGAAAATAATGTATTCTTAGAGATTGCTGTACCGACTATACTCCGAAT
GATTTCGACCAGCTCCGAAAGAGAATTCCTGGACGGGATTTACCTACCCG
GGCGAGTGAACTCTTCCGTTATCCGGGACACCCGGTATCTTTGGAGTCAT
TACCAGGATGATTTACATTTTATTCATCCGGTTAAGCTACGATACGGAGA
TGAAGGTACTTCTTTGAATCGTTTTGTTTTGGATACTTTTGTAAAGCCAA
AATTTGATTCAATTTTGAATTGCACAAGGAATTAAAACTATGGCATTATA
ATTATGAAAAAGATTTCAATGCTACAAAATAGTTTTCTTGTCATACTTAT
TATCTGCTTGACAATAGTAATAAAAGAATATTATTTACCAAGCTTTATAT
GGACAAATCAGCAGCACCCTTTGCTAAAAATCATCCATCGAAGTCCATTA
TACCCAAATAAACTTTGTTTGAGCGGCTACTATAAAAATATTCTGCTACT
TGTTAATTTTAATCATCCGTTTTACGACAATATCCCAATGATCAGGTCAC
TTTACGAGCGAGCATTTCCTAATATGGTATTCTACGGTACAAAAAAATCT
CGAAAATTCAACGTTCACAAAATCGAGTCACACAAAGGATATTTCAGTTA
TATTGCTTTGGCAGACGCAATGGAAAAATATACAAATTTCACTGGCTATC
TTTTAATCAACGATGACTTATTAATACACCCGTGGTCACTTTTAAAACTT
GATCAAAATAAAATTTGGGAAGGACCGAAATGGCCAATCGCTGTTGCGAA
TTTGAGCGCGTTTGACCACTGGTATTGGTGGAACAGTCGATGGGGTTTAA
AGAAATGTCTTTTAGCTCGACAATTAGCAATGACGAAATATTCAAATTTA
ATATCAACTTTACACGACCCTGAAAATACAACCGATCAAAGATTAGATTG
TTATCGCGGACGTGCTGATATATTTTACGTACCTAAACACAAATGGAAAA
CTTTTTCCAAACTTTCAAAGATATTTCATGAAAATAATGTATTCTTAGAG
ATTGCTGTACCGACTATACTCCGAATGATTTCGACCAGCTCCGAAAGAGA
ATTCCTGGACGGGATTTACCTACCCGGGCGAGTGAACTCTTCCGTTATCC
GGGACACCCGGTATCTTTGGAGTCATTACCAGGATGATTTACATTTTATT
CATCCGGTTAAGCTACGATACGGAGATGAAGGTACTTCTTTGAATCGTTT
TGTTTTGGATACTTTTGTAAAGCCAAAATTTGATTCAATTTTGAATTGCA
CAAGGAATTAAAACTATGGCATTATAATTATGAAAAAGATTTCAATGCTA
CAAAATAGTTTTCTTGTCATACTTATTATCTGCTTGACAATAGTAATAAA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065707-exon-scaffold_443-1575043694:48195..48287 | TCONS_00065707-exon-scaffold_443-1575043694:48195..48287 | Clytia hemisphaerica | exon |
| TCONS_00065707-exon-scaffold_443-1575043694:46815..47899 | TCONS_00065707-exon-scaffold_443-1575043694:46815..47899 | Clytia hemisphaerica | exon |
| TCONS_00065707-exon-scaffold_443-1510915933:48195..48287 | TCONS_00065707-exon-scaffold_443-1510915933:48195..48287 | Clytia hemisphaerica | exon |
| TCONS_00065707-exon-scaffold_443-1510915933:46815..47899 | TCONS_00065707-exon-scaffold_443-1510915933:46815..47899 | Clytia hemisphaerica | exon |
| TCONS_00065707-exon-scaffold_443-1491911889:48195..48287 | TCONS_00065707-exon-scaffold_443-1491911889:48195..48287 | Clytia hemisphaerica | exon |
| TCONS_00065707-exon-scaffold_443-1491911889:46815..47899 | TCONS_00065707-exon-scaffold_443-1491911889:46815..47899 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_443 | supercontig | scaffold_443:46815..48287 - |
Blast
The following BLAST results are available for this feature:
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