|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065700 ID=TCONS_00065700|Name=TCONS_00065700|organism=Clytia hemisphaerica|type=transcript|length=1049bp
CAAAACATATCCCATTAGGCTTTGCGCGACTTGTTTTGCAAACAGAAAAT
ATGGAGTAATGGCGGCCGATACTAATGAtgtgatttttggtacaaatttA
ACACCAAAAAAGAGCTTAACTGAGCTGAATCAGCCGCAGACTGAAAAACC
ACTACACTATACGTATTTGAAAGAATTTCGTGTTGAGCAGTGCCAACTAT
TTCTTCAACACAAATGCACTCAACATAGACCGTTCACTTGCTTCTCTTGG
CATTTCCtcaatcaaaaaagaagaaggccaagaaagaagaaagaaggaAC
TTTCAACTACAGTCCTGACGTTTATTGTCAACATTATAATGAAACGACTG
GTGAATGCCTTAGTGGAGATGACTGTCCTTTTCTGCATCGTGTAGCTGGG
GACGTTGAGCGTAGATACCATTTGCGATATTACAAGACATCACCTTGTGT
TTACGAGACAGACCAAAGGGGATATTGTGTTAAGAACGGCCCACATTGTG
CTTTTGCACACGGTCCACACGATTTAAGACAACCAGTATACGATGTAAGA
GAATTACAACTAATGGAGAACGAAGAAAAAGATGAGAGCGGGAAACAAAT
TGTACCGGAAGACCCGAGATGGAATGAAACAAATTATGTACTAGCAAATT
ACAAGACAGAACCATGTAAAAAGCCTCCAAGATTGTGCAGGCAGGGATAT
GCTTGTCCACAATACCACAATAACAGGGATAGGAGGAGGAGCCCAAAGAA
ATATAAATATAGGTCTACACCATGCCCGAATGTAAAACACAGTGATGAAT
GGGGTGACCCTGCAGCATGTGAAAATGGTGATAGTTGTGGTTATTGCCAT
ACAAGGACTGAACAACAGTTCCATCCTGAAatttacaAATCAACGAAATG
TAACGATATGCAACAGACTGGACAATGCCCTAGAGGCCCCTTCTGCGCTT
TTGCTCATATTGAGCGTAAGActacaattttaaattttcatttcaatgca
CAATTTTTCTTGTCAGATCAATGAATAGTCATTTTTCTGGATCTTTTAC Run BLAST on NCBI protein sequence of TCONS_00065700-protein >TCONS_00065700-protein ID=TCONS_00065700-protein|Name=TCONS_00065700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
KTYPIRLCATCFANRKYGVMAADTNDVIFGTNLTPKKSLTELNQPQTEKP
LHYTYLKEFRVEQCQLFLQHKCTQHRPFTCFSWHFLNQKRRRPRKKKEGT
FNYSPDVYCQHYNETTGECLSGDDCPFLHRVAGDVERRYHLRYYKTSPCV
YETDQRGYCVKNGPHCAFAHGPHDLRQPVYDVRELQLMENEEKDESGKQI
VPEDPRWNETNYVLANYKTEPCKKPPRLCRQGYACPQYHNNRDRRRSPKK
YKYRSTPCPNVKHSDEWGDPAACENGDSCGYCHTRTEQQFHPEIYKSTKC
NDMQQTGQCPRGPFCAFAHIERKTTILNFHFNAQFFLSDQ Run BLAST on NCBI transcript from alignment at scaffold_443:295624..307814+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065700 ID=TCONS_00065700|Name=TCONS_00065700|organism=Clytia hemisphaerica|type=transcript|length=12191bp|location=Sequence derived from alignment at scaffold_443:295624..307814+ (Clytia hemisphaerica)
CAAAACATATCCCATTAGGCTTTGCGCGACTTGTTTTGCAAACAGAAAAT
ATGGAGTAATGGCGGCCGATACTAATGAtgtgatttttggtacaaatttA
ACACCAAAAAAGAGCTTAACTGAGCTGAATCAGCCGCAGACTGAAAAACC
ACTACACTATACGTAAGTTTGTTTAgtcatttatcattttttaaactttc
tttttgCCAATTCACTAAGGAAAGTTGACATTAAAACTTTGGAATTGACA
AGCCAATAAAAATGTTTtagctaaaaaaattttttttaaagctattattT
CCAACTTCTCTTAGAATTTGTACTTATATAAGTTTGATTCGCACTAAAAC
TTCACTCATTGCTTTACTTGACTTCAGAAGATCCAGTAAATCCACAGTTA
GGAATAAATTTTATGATGGTTTTCACAAAATAAAATCTAAGTTAGCCTAG
AGCCAGGGTGTCAAACGTTATGTAACCTCCGctcaacgagttttcactac
aCTTAATTAAATACCTGATTACAAACAACTCTCTTTGCGGCTCATTTTAT
TGCATccaatcagatttttgtattttctctcACAATTCAtgaatcaaaac
aacaatttcaGTGAAGTATATTAGTCAAGtttgaaatagacctttttgcc
tttccatcagccatattgaattgtttgcaaaaattatggtagccaaattg
ccgtggtgaaattcccttagaaagtatgcaaaacatatgcaaaaagaaag
tattaatatataaaacttacatgcataattggcattatattaaagtgtaa
tcttgtagaagaaagattaaatttgcttcttttgaaaactagaaataatc
aaatttgcccgtctcttagaacaagcagtgaggctggaactgcgattttt
gaggattacgattttaccagctttttagccatttttgcctcgctaaccca
aatctagcaacctctttaccttaaaggatgatcgaaattagagtttttca
gcgttccgaaagaaacgcaaagcagaaattttttcatcttcacaggatcg
attgtcaacaacaaaatacatcttttggtctttgggtttgtttgacgttt
ttccttcaaagaatatctatcactttccttttccccttgagcgcgcgaga
aaaaaatgattagctcgcattctcgcgcgggcgaataaagatgaggcggc
aatcttgcactgagggtgctacttagtttccgcccttttgcgcccacgat
agaatggtccaaatacgggggtattccaaatgataaacggtgtcgttctg
taagtgtttattttctgatagatacaaatagtatattgaatattatcaac
ttactctcgggtacctaatagccgtccccccccgctaattaatttttcga
aaattttccacccaggacattcttattccaacccccccgcttattaagtt
ttgggaaaatgtttttgaaagttcccttttttgtcttaattctgctatat
tagcctccttttcaaacattttccacccaggacatttttattccaacccc
cccgcttattaaattttgagattNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttgagcccaaatt
taaatatctggttaaataaaaaacaaatgacagcagttctgtttttcttc
aaacccccgggaaaagtttttttgccgacttttttgctattttacaaatt
tcggaaaagaactcccataggaattccgattcaTAACCGGATTGGTTCAT
TTCgaaacggcttcaagaaagtcataatggcagataattttaaaagtttc
tctgagtaaatgtgtgttatttatcgatgttgatggcttgttgattcttt
aaagaaaaaagataacaggtatagctttttctaatcctggaatatcgagg
ttccagctacactgacaagcacttcaaaaaaccataacattagacataaa
ctcaagctgaaaaacaCCCAcaaaggtacaaaaataatccttattcggct
gacggtaaattattctcctgggaatagaaccgccaaacgatcaaatcaaa
acatcgatctgaattactgctttcagtttgcgtgttttgaaagttgatgt
gtgtactccgtcttcgtggaattttttaatggcatgaaaacagaatatgc
tatgtctttaagaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNtttgcatattttccaactaaatccaacca
cggctttttcgttcctatatttttgcatacaattcaagatggcggatgga
aaggcaaaaaggtctattattttctattagaaaaatggttaaaagcagtc
aaaacgcaacGCACCTTTCCCGcaattcaaacttctcagaaatggcctgg
gaaaatgtgcgctccaccgttgtgtataaaattgttagGGAGGTAAAAag
aaacgcgtttttgcctgcgacaCAGATGTTACGTGAGGTAATCGTCACAA
GCCAAAATCTATGTTTAacagattttgaaaacaaaagtgtaAAGAATAAA
CATTGTTTGTTTAAAACGCGGGTAAAAAGTCCTGGGCTGAGTCCCTTGTT
TGCTCATTTATAGCGACTCCTGAAGTCACGCAACtctcgttgacgtcaaa
ccaaatgtttcatttttccatgaactttgaaccctttgagctttttttct
atgtatgctaaagcgttccggattttactaaaagaaagcccgtgatctta
gctttccagcggtatataacactatGGACTTTTTGAATTGTCTTCTGACG
GGAGAAAAAGAATTTGCAACTATCGACGAACAAATGTTTCTGAAAACAGA
GGAAAATGTTGTTGAAGGCTgtaactttgtatgtttatcagaaaaagggt
gatgaattcaaaaatcacattcgctaattttaattctttcattttcatgt
agtttttttctcacttttttgcttctttaacataggaatgtcccaaaaaa
aagtttatatttctgccgaaatggattttcttttcatttggggtttctcc
tttcataaaaacttattctttacttataactttttgttcctccatttcca
gaggccccttgaaaatgggtcctaccaccttttttgactcatttcaacct
tttccaagctacttttcttcaaaaacaaaataaaacaatacaatgtcttc
ttttttcaaaaaaagatatatctttcgttattttcataaatatacttaat
attttacaaatatttttatataatagtattctaacaccatcaattagtta
agtattcccaaagttattccattttcaaaacacaaaaaatcaccttttca
aagaatcacctccttacaccacgccagcaagaaataatttttgaaagcaC
CAAAATcacgccaaaaatggcggatgaaatctagtcttccgtgtggcgag
gtgtggggagttttgccgATGCGGTCTGAAAGTCGGCCcaatgactgtta
aactttagcttattgcaaatgagctggaaatgatagctaaaaacaaattt
caccactagaaagctgaagctgaaatcctcagctttcagatggtgtatgg
cacttaaatgaaaaaatctgcaatcttgttaaaaaatagcaatttcttct
atttttcgaaattccagacggcgtgtagattttcaaataaagcgtattgt
gatagattgtagcctaatcttaccctgggtttactaaaaagaccgcgatt
gaaaagatgaaccagctcaatagcgacagccatttgtttccaCGAGGGTC
GAGAATcttccggtgccgtggtcagcgctaagtcgtgttttcaccttgac
gtcaaaaaacatcaatatctttggaaagaaaatagatacctggatgtagt
ttttttaacttgtttctctgataattcctgattgatttaaaaaaaagaat
gaacagatttggatgatttaaaggtaagtactaatgcattgaagttcatt
tttgtaaattcttccttgtTCCGCACAAAAAAttccgacgagtgcgcacc
ctaccaATCAGATAACACAATCTAGCCGGCCGCGATAAAATCACattgta
aatatggaaataaaGCTGGGGTTTAAATATTTGCTAGAGGCTTATTTCGC
TGAAAGAAAATAGCTTTAATGaaacaaattttggttaaatatctttttta
ttatatataaaaCCTGAATCTAAATGGTTTAAAGAAGTAAAAGATTTGTA
CGACTTCAAAATAGACAAAGATCATTTATGACCCCCGTCTCAGATGAGGT
TTTCAGGCTTTATCTAAAGATAGAGGACTAAAACAAGCTTGACCCACTAA
ACTATATATATTCAGCACCAGACTCTCTGACATTCTGAGAAATTATTTGC
CTGGGAAGAGCAGCAGATTTCAGCGAAATGCtgctttttgctctaaaagt
gaacatgttttttcttttataagcataacgtttataagcatatgcaggct
aagtttttggtacctaaacaatggctctattatTTGAGAACAATGATTGC
TAAGTATAATGtaagcctgatgtaggggcagacacttgcttataaaaaaa
aacatgtatggtGGAAATGGTGCTTGGGCGaacctgaaaaaaatttttgt
ttccggtccaccggctgGGTGAAAATTTATTGTGTCGTCACCCGGCCGAA
ttttttttcgtacatcatcgttagggttagggttagtttgtttgtttgaa
aaacttttgtgaatcagtttttgaggcgtgtaatttatcgcacgtgatat
tttatattctactgtaaaatgcacgcctagaaatcacttggaatgaaggt
tcatcctgatcattgttatagaaatgaaattggggacttttcagtaagta
aacagctttgtttttataaaaggaatcatgctgacttgtgagtaaaataa
aaagaaacattcataaagtgaggatttaaaaaattggggaaaagTTTCTC
TCGctctacttttttctcaaaaaagttcccttcgtaatcacagtttggag
cctttagcaattgaacacaaatattcaaaatgaaagagagtgtccagttc
ttagagatattgtaacacataattgaaaatataaacgattaaaattaagt
atttgaataatcgcacgcctagaccactataaatcaaaatctaggcgtgc
gatgatcacacatgaatttttcttatgccgaagcctgtagcggtgtcaag
ttactacagatttaaggtaaagaagaccatcattttaacttctacgagtg
ctttaaaaaatcgagttttgggatcaagatttagcaaaaaaaattatttt
gcagccggccgggtgagtgtttttttcgtcacccggtggacaTTTTTATC
GGGTTCGCcttgttttcaaacttaaacatcaattcatttgaaattaaata
ttttgtttatttggatTACAGGTTTaagatttgttttatttttatttttt
gatgatagCTTCACTCAATCACTTACAATGAgcctttgaaatttgtttat
tttgtattctGATTGCTCTCGCATGATGCCGCCATTgtggagtttttttt
ttgcgtttgcTAAATGCGATTTTGTAAGACTTTGCATTACCAACTTTTGC
TTACGGCAAACACCTGtggcgaggggttagggaaagtgggttttcagctt
ctaacttttgatagcaatCTTCTTtttgcaaaagattttcagggtggtat
aatatcatgaatagattgaacatactaaaatcaaatcaaatgactttgga
ggttcggtgaaatggtggccgattTGCCGTCCCAtattttgtcagatagt
cccaagttagagcagttgacggtatatagTATATACCCTAGAATCATCTA
TTATCGACATCCCTCCTTTATAGTCCACACCGGATCtgtaagataataaa
aaaaccttgaatgaaattcttgttATCATTCTTATCAAGCAAGTTCATCT
ATCAAACtaaagttcagtaaacattgcaattctttcaattaaaaaagcag
ccaaatctggccaaattataagcaattTTACACAAAACATGAAACGCATG
TAAACTTTCTTGTGTCcattattaaaattttacaactttattatgCTTCA
AGTGacttgataaaaataatttgcaagcttagtcgacctggtttcccTTT
CTTTATTATTTATTGCAAGTACACGCTCTTCCTCATAAGGAAActgggtt
ctttttattattttcgattCACGGTTAAAAGCCCTACTAAAAAANATGCG
CTAAGAGGCCGCATTAAACTTCTAGACATCACCTCGCACACCAGCGGTCC
CTTTTTAACTTATAGCAGGCGGATAAGGCAGGATGGTTGGCggtatggcg
gtcacattaaattcataaggaaactgggttctttttattattttcgattC
ACGGTTAAAAGccctactaaaaaattcctagggtgcaaaaagttgttttg
attttgatatctatgtggaaagcatgctaattactTAGTATGGACTATAT
CGttaaagttgtctttttgaaaaaaaaatcactacaTATTTCTTATGTAT
CTATTTATTATGactgaattttgattggttgaaagtttcaaTATATTTCC
ATGCTCTGAAAACCTCCAACAACCCAGGAGTCCCTTTCATGGGTCATTGT
TTTAACGCTGGAGTTTCTTCAAGGAGTATAGCAAGCAATGCAACTGTTAC
CATACATGATTGAGCTTTTATCAAACAAGTTAGATGTAAAAGCTAGCCAA
AATGAGGATAAAAGGGTCTGCTGAGTAATACTGGCTACCAAGGGTTCAGG
GTTTGGAGCCCCTTGAAAGCTAAATAATATGTTTTAGCGCACCCACTCAG
ACACTTTTTAAACTTACTCTAGTTTGCTTTCAATTTGAAGTGATTAAAAA
TGATAGATCAGGAGGTTAAGATGGTGATGAAATTTTACAGCAATAAAATA
ATTAGTGTATcacattttgtgatttttaatttACTGACTaactaaaatca
taaaatcaaaaatcaatcaaTGTTAGGGTACTCGTTCTATgtaaaaaaaa
tcagcaaaaactgtgctttttaatcaatttaAAGGGTCAGCTGAGTTAAG
CGTGGTATTTGATTAGACTTTAAAAGTGGTCTTACCTTAAAGTTAACAAT
tctggcgggaacttaattagGCAGTTGTGGCAGATTTGTCAAAAATCCAT
CAAATTAAGTTCTCATCAAAATGTCTTATTTGTCATCcaccaaatttaat
ttcttttgccatccgccaaattaaattcctgccaaattaTTGTATTCATT
CCCCAACTGTATGCATTTTCAGGCCTTGaatttgaaacaaattttttctt
atttaaaaggGTTCATTGACCAAAAATATCCtacatccaccaaattaaat
tctcataGAATTTGATTTTACAAGgcatttgccaaattaaattcctgtca
aatcaaaatttttctgcCATTTACCAAATTAATTCACACCaaaaattccc
gccaaatttctTCCCAAGGTAGATATCTTAAAAGTTTACCACAGGTACTA
CTGCATTTTATATTCTTGGATATTCTTTCTAGGATGAGATgggaaaaact
gattttgagtTCAAAATCACTTTCTACCCAGCAATGGATAACTCtagtaa
aacaattgaaaaaatacatttttggaCTAAAACAGGAACAAACAGGTTAG
AGGTAGACACTTTTGGGATCCCcagtaaaattgaaattatgttgGAACTT
TTTACCAAAGGTTCTTCAAGCCTCTAAGGGCCAGTAGGGTCaatttttat
tgcaatcactttGTATTGGTAGTCCAATGACTGCATTACCAGAAACAATT
ATTGtaaagcgaatttatgagcaaagcagttttgctacattgtgtgcacg
taccttCAACTTCTATCCCAAGTGAAAATTTGCAAtgtaaatcacatctt
caaacctgtgattttgtcaaaatgaccttgaatggttttgNTAAATTTGC
TAtgtaaatcacatcttcaaacctgtgattttgtcaaaatgaccttgaat
ggttttgCTTGAAGccacaaaaattttctcggtttggtagctagtaCTGC
GAGAAATGCCGTTTtgaaatggtgtaccctagcagtgaacagcaaaaaaa
ttaccggaagccgaaacacagacttatagaatctgaagttgatcaaattg
ttgcggttttaaatgtttattttgctgttaaatggaaaaaaattagtttg
aaaggtgacagaaaggatcttcatcattccttgacttttaaaagtaacta
tcaagtatcaaatattTGCAGTTCGTGCCGGCGGGAGGAGTGTTCTTTTA
AGTGAactaaacttaccttgcaaaaccaagtggatattcaatGACAAAGA
GGTACGGAGGTAAtctaatttatcaaatttgtcaagaaaacaaatcaaaa
ttagccaaGAACCAACAATAAGCTATCTTTGTagtttttgcttttgttta
cttttgatgatttcgacagatatttcgaataaaaatgttcaaacGTTCGA
CAACTatcgtttgatttttttaaggTACCATTTACATTAGAAGAACTATA
AGGAAAGAAAGAGCGTTGCGCGCGGGGTGGCGGGTGCTGTTCTGCCACGG
TttgtgtggtgtgtttggggtatTATAAGCTTAAAACCCTGTCTCTTTTT
GGGCTTTATCAGAGTGGCtctattttgctagcaacttgcgaattgaggtg
gagtttGGATCgattcgcaacccttatacaatacggctagttttgAACAG
ATAAAAAATTCCCCTGGGGCTGGTCACGTAGCCCAAAGTACCCCTAAAAT
CAAGTTTGTAGTGTTTTTAGTGACTTCAAAGctccagctaccattttgaa
aattttttggaaaattttatttcgAAAATATTCCCTACCCCAGTTTATTT
CAACCCCCTTTTTATGAGGCACCAGGGagtagttcccttaaggtatctgT
TACTTTAATAAGTTAATCACtattatttttattctttttacaTAGGTATT
TGAAAGAATTTCGTGTTGAGCAGTGCCAACTATTTCTTCAACACAAATGC
ACTCAACATAGACCGTTCACTTGCTTCTCTTGGCATTTCCtcaatcaaaa
aagaagaaggccaagaaagaagaaagaaggaACTTTCAACTACAGTCCTG
ACGTTTATTGTCAACATTATAATGAAACGACTGGTGAATGCCTTAGTGGA
GATGAGTATGTgatctattttttttctttagacgAGGCCAATTTAATCTG
TTGTTTTatgggccaagctacccaaaaaaaaGGGTTGGTTggtgaaaaaa
aatagaaaatctccaaaaaaggCAGTACAGCTATACAAAAATgtgaaatt
gaaagcaaaaaaaaacaacacaaaaagctcgaattcatggataaaaaaaa
ttgaacatgaaATTCTCAAAGTCTTGGAAAActaacaaaattttgaaaat
ttggcagtctgtaaagcaatgaaaattgaaatgtactaccaaaatcaatc
TTACATTTCTGGAATATCAGGGTCGGTCAGGTcagtaaaacaactaatca
aattagTGTCACCTTACCTAAAATTCTAAAAGAGATCAAAGATCCAAATT
CACTCCCAATGATAGTGTTTCTTCTGGAGGTATCACCTTCTTGCGCTGCT
TAATTTGGGTAGGATGCGAACCACTTTGATGATGCGTCATTATTTTGTAT
CACTTTTTATGTTTGGTTATGAGTTTAAAGTCAccaagtcaatttttttg
aagaaaaaagtgcaCATGAATTTTCATTTACAAGATAAATATTATATACT
TTTGTTTCATTACTAGCTGTCCTTTTCTGCATCGTGTAGCTGGGGACGTT
GAGCGTAGATACCATTTGCGATATTACAAGACATCACCTTGTGTTTACGA
GACAGACCAAAGGGGATATTGTGTTAAGAACGGCCCACATTGTGCTTTTG
CACACGGTCCACACGATTTAAGACAACCAGTATACGATGTAAGAGAATTA
CAACTAATGGAGAACGAAGAAAAAGATGAGAGCGGGAAACAAATTGTACC
GGAAGACCCGAGATGGAATGGTGAGAAGAACACTTATACTATTTGCTTTT
CCACATCTCTTGGGGAAAAAATTCTAGAAGATATCCttagttttagtttt
aattGCAAGTCTTTTCATTAAAAGGTTTTGGGCTGATTTATCAGTTTGCG
ACTAATCTTTGTTTCGAAAGCATCAGTCCACTTTAGCAGTATTGTCTTTG
ATTTTCTACATTTTTCTATAATAATATGTAACCTTTAACTTAAACTAAAA
GAAGAGACTTTGATCTATTTATTATATAAGTTTAATGCCGTCGTGTAGAC
GACAATCATCAGCTAAATGAAAatcgtttgaaaaatattgatatgcaatg
gcttcttctgtTTGAAATTCTGACGTTCTGACTTGTAATTTAAGGTTATa
ttcttgaaaattatacacTTGCATTTCAGAAACAAATTATGTACTAGCAA
ATTACAAGACAGAACCATGTAAAAAGCCTCCAAGATTGTGCAGGCAGGGA
TATGCTTGTCCACAATACCACAATAACAGGGATAGGAGGAGGAGCCCAAA
GAAATATAAATATAGGTAAGTTACAAAGAGTGATGttacaaaattttcta
aaatgaaATAGTTTATAACTTCCTATTATTGACCAACTTGGATTTGACAC
TATGTACCtttgcaaaaatttttcttGGGCTTATGACAGATTATGACTGA
AAACATCTCTTGACACTTTCGTTAGTTATCATAAAAACAATACTGTACAG
GCTCAGTGAATAATTTTAAATGTCTTGCCTCCAAAGCTCACATTCGCTTA
TTCATTCAGCTCACGAAGAGGCCTTTCTCCAAATGCAACAcaattctgca
aaattttgaagaatcTTGCCTGATTTATTGTTAAAAGCATTTTCCGTGAG
AGACAAAAGAAACTTTGCCATTGCATACTGTAGCACAATAAAACCTGAAA
TACAGGTTGACCTTTTTATTTCTGACAACTCTCAAATTATTTCCGCACAA
TTCTTTTCTTTACAGGTCTACACCATGCCCGAATGTAAAACACAGTGATG
AATGGGGTGACCCTGCAGCATGTGAAAATGGTGATAGTTGTGGTTATTGC
CATACAAGGACTGAACAACAGTTCCATCCTGAAGTAAGTCAAGAGAAGTG
GATTGTGGACTTTCAAAAAAGAAGGGAACCTGCAATAATTCTATACCTAT
AATATGAATGGgcaaaaaaatctttaaccCTTATGTTGAGGAGTTCATAT
TTTTCGCCTGAGGGGGCCAGTGAAAATCCAAGGGGAAGACCTTTGAAATT
TAGATGGAAATTCAAGGGGGTACCTCAAAAATTTGCTAAATCTAAAACCA
GAAAGGGTCTCTGAAATCCTAGGAGACGGGGGATGCAATATATAATAGGG
GAGTTTAGACTCATCTGCACATTATGTGTGTATTATAATGTACCCTAcaa
ttatttctttcttttttttaagatttacaAATCAACGAAATGTAACGATA
TGCAACAGACTGGACAATGCCCTAGAGGCCCCTTCTGCGCTTTTGCTCAT
ATTGAGCGTAAGActacaattttaaattttcatttcaatgcaCAATTTTT
CTTGTCAGATCAATGAATAGTCATTTTTCTGGATCTTTTAC Coding sequence (CDS) from alignment at scaffold_443:295624..307814+ >TCONS_00065700 ID=TCONS_00065700|Name=TCONS_00065700|organism=Clytia hemisphaerica|type=CDS|length=6138bp|location=Sequence derived from alignment at scaffold_443:295624..307814+ (Clytia hemisphaerica)
AAAACATATCCCATTAGGCTTTGCGCGACTTGTTTTGCAAACAGAAAATA
TGGAGTAATGGCGGCCGATACTAATGAtgtgatttttggtacaaatttAA
CACCAAAAAAGAGCTTAACTGAGCTGAATCAGCCGCAGACTGAAAAACCA
CTACACTATACGTATTTGAAAGAATTTCGTGTTGAGCAGTGCCAACTATT
TCTTCAACACAAATGCACTCAACATAGACCGTTCACTTGCTTCTCTTGGC
ATTTCCtcaatcaaaaaagaagaaggccaagaaagaagaaagaaggaACT
TTCAACTACAGTCCTGACGTTTATTGTCAACATTATAATGAAACGACTGG
TGAATGCCTTAGTGGAGATGACTGTCCTTTTCTGCATCGTGTAGCTGGGG
ACGTTGAGCGTAGATACCATTTGCGATATTACAAGACATCACCTTGTGTT
TACGAGACAGACCAAAGGGGATATTGTGTTAAGAACGGCCCACATTGTGC
TTTTGCACACGGTCCACACGATTTAAGACAACCAGTATACGATGTAAGAG
AATTACAACTAATGGAGAACGAAGAAAAAGATGAGAGCGGGAAACAAATT
GTACCGGAAGACCCGAGATGGAATGAAACAAATTATGTACTAGCAAATTA
CAAGACAGAACCATGTAAAAAGCCTCCAAGATTGTGCAGGCAGGGATATG
CTTGTCCACAATACCACAATAACAGGGATAGGAGGAGGAGCCCAAAGAAA
TATAAATATAGGTCTACACCATGCCCGAATGTAAAACACAGTGATGAATG
GGGTGACCCTGCAGCATGTGAAAATGGTGATAGTTGTGGTTATTGCCATA
CAAGGACTGAACAACAGTTCCATCCTGAAatttacaAATCAACGAAATGT
AACGATATGCAACAGACTGGACAATGCCCTAGAGGCCCCTTCTGCGCTTT
TGCTCATATTGAGCGTAAGActacaattttaaattttcatttcaatgcaC
AATTTTTCTTGTCAGATCAATGAAAAACATATCCCATTAGGCTTTGCGCG
ACTTGTTTTGCAAACAGAAAATATGGAGTAATGGCGGCCGATACTAATGA
tgtgatttttggtacaaatttAACACCAAAAAAGAGCTTAACTGAGCTGA
ATCAGCCGCAGACTGAAAAACCACTACACTATACGTATTTGAAAGAATTT
CGTGTTGAGCAGTGCCAACTATTTCTTCAACACAAATGCACTCAACATAG
ACCGTTCACTTGCTTCTCTTGGCATTTCCtcaatcaaaaaagaagaaggc
caagaaagaagaaagaaggaACTTTCAACTACAGTCCTGACGTTTATTGT
CAACATTATAATGAAACGACTGGTGAATGCCTTAGTGGAGATGACTGTCC
TTTTCTGCATCGTGTAGCTGGGGACGTTGAGCGTAGATACCATTTGCGAT
ATTACAAGACATCACCTTGTGTTTACGAGACAGACCAAAGGGGATATTGT
GTTAAGAACGGCCCACATTGTGCTTTTGCACACGGTCCACACGATTTAAG
ACAACCAGTATACGATGTAAGAGAATTACAACTAATGGAGAACGAAGAAA
AAGATGAGAGCGGGAAACAAATTGTACCGGAAGACCCGAGATGGAATGAA
ACAAATTATGTACTAGCAAATTACAAGACAGAACCATGTAAAAAGCCTCC
AAGATTGTGCAGGCAGGGATATGCTTGTCCACAATACCACAATAACAGGG
ATAGGAGGAGGAGCCCAAAGAAATATAAATATAGGTCTACACCATGCCCG
AATGTAAAACACAGTGATGAATGGGGTGACCCTGCAGCATGTGAAAATGG
TGATAGTTGTGGTTATTGCCATACAAGGACTGAACAACAGTTCCATCCTG
AAatttacaAATCAACGAAATGTAACGATATGCAACAGACTGGACAATGC
CCTAGAGGCCCCTTCTGCGCTTTTGCTCATATTGAGCGTAAGActacaat
tttaaattttcatttcaatgcaCAATTTTTCTTGTCAGATCAATGAAAAA
CATATCCCATTAGGCTTTGCGCGACTTGTTTTGCAAACAGAAAATATGGA
GTAATGGCGGCCGATACTAATGAtgtgatttttggtacaaatttAACACC
AAAAAAGAGCTTAACTGAGCTGAATCAGCCGCAGACTGAAAAACCACTAC
ACTATACGTATTTGAAAGAATTTCGTGTTGAGCAGTGCCAACTATTTCTT
CAACACAAATGCACTCAACATAGACCGTTCACTTGCTTCTCTTGGCATTT
CCtcaatcaaaaaagaagaaggccaagaaagaagaaagaaggaACTTTCA
ACTACAGTCCTGACGTTTATTGTCAACATTATAATGAAACGACTGGTGAA
TGCCTTAGTGGAGATGACTGTCCTTTTCTGCATCGTGTAGCTGGGGACGT
TGAGCGTAGATACCATTTGCGATATTACAAGACATCACCTTGTGTTTACG
AGACAGACCAAAGGGGATATTGTGTTAAGAACGGCCCACATTGTGCTTTT
GCACACGGTCCACACGATTTAAGACAACCAGTATACGATGTAAGAGAATT
ACAACTAATGGAGAACGAAGAAAAAGATGAGAGCGGGAAACAAATTGTAC
CGGAAGACCCGAGATGGAATGAAACAAATTATGTACTAGCAAATTACAAG
ACAGAACCATGTAAAAAGCCTCCAAGATTGTGCAGGCAGGGATATGCTTG
TCCACAATACCACAATAACAGGGATAGGAGGAGGAGCCCAAAGAAATATA
AATATAGGTCTACACCATGCCCGAATGTAAAACACAGTGATGAATGGGGT
GACCCTGCAGCATGTGAAAATGGTGATAGTTGTGGTTATTGCCATACAAG
GACTGAACAACAGTTCCATCCTGAAatttacaAATCAACGAAATGTAACG
ATATGCAACAGACTGGACAATGCCCTAGAGGCCCCTTCTGCGCTTTTGCT
CATATTGAGCGTAAGActacaattttaaattttcatttcaatgcaCAATT
TTTCTTGTCAGATCAATGAAAAACATATCCCATTAGGCTTTGCGCGACTT
GTTTTGCAAACAGAAAATATGGAGTAATGGCGGCCGATACTAATGAtgtg
atttttggtacaaatttAACACCAAAAAAGAGCTTAACTGAGCTGAATCA
GCCGCAGACTGAAAAACCACTACACTATACGTATTTGAAAGAATTTCGTG
TTGAGCAGTGCCAACTATTTCTTCAACACAAATGCACTCAACATAGACCG
TTCACTTGCTTCTCTTGGCATTTCCtcaatcaaaaaagaagaaggccaag
aaagaagaaagaaggaACTTTCAACTACAGTCCTGACGTTTATTGTCAAC
ATTATAATGAAACGACTGGTGAATGCCTTAGTGGAGATGACTGTCCTTTT
CTGCATCGTGTAGCTGGGGACGTTGAGCGTAGATACCATTTGCGATATTA
CAAGACATCACCTTGTGTTTACGAGACAGACCAAAGGGGATATTGTGTTA
AGAACGGCCCACATTGTGCTTTTGCACACGGTCCACACGATTTAAGACAA
CCAGTATACGATGTAAGAGAATTACAACTAATGGAGAACGAAGAAAAAGA
TGAGAGCGGGAAACAAATTGTACCGGAAGACCCGAGATGGAATGAAACAA
ATTATGTACTAGCAAATTACAAGACAGAACCATGTAAAAAGCCTCCAAGA
TTGTGCAGGCAGGGATATGCTTGTCCACAATACCACAATAACAGGGATAG
GAGGAGGAGCCCAAAGAAATATAAATATAGGTCTACACCATGCCCGAATG
TAAAACACAGTGATGAATGGGGTGACCCTGCAGCATGTGAAAATGGTGAT
AGTTGTGGTTATTGCCATACAAGGACTGAACAACAGTTCCATCCTGAAat
ttacaAATCAACGAAATGTAACGATATGCAACAGACTGGACAATGCCCTA
GAGGCCCCTTCTGCGCTTTTGCTCATATTGAGCGTAAGActacaatttta
aattttcatttcaatgcaCAATTTTTCTTGTCAGATCAATGAAAAACATA
TCCCATTAGGCTTTGCGCGACTTGTTTTGCAAACAGAAAATATGGAGTAA
TGGCGGCCGATACTAATGAtgtgatttttggtacaaatttAACACCAAAA
AAGAGCTTAACTGAGCTGAATCAGCCGCAGACTGAAAAACCACTACACTA
TACGTATTTGAAAGAATTTCGTGTTGAGCAGTGCCAACTATTTCTTCAAC
ACAAATGCACTCAACATAGACCGTTCACTTGCTTCTCTTGGCATTTCCtc
aatcaaaaaagaagaaggccaagaaagaagaaagaaggaACTTTCAACTA
CAGTCCTGACGTTTATTGTCAACATTATAATGAAACGACTGGTGAATGCC
TTAGTGGAGATGACTGTCCTTTTCTGCATCGTGTAGCTGGGGACGTTGAG
CGTAGATACCATTTGCGATATTACAAGACATCACCTTGTGTTTACGAGAC
AGACCAAAGGGGATATTGTGTTAAGAACGGCCCACATTGTGCTTTTGCAC
ACGGTCCACACGATTTAAGACAACCAGTATACGATGTAAGAGAATTACAA
CTAATGGAGAACGAAGAAAAAGATGAGAGCGGGAAACAAATTGTACCGGA
AGACCCGAGATGGAATGAAACAAATTATGTACTAGCAAATTACAAGACAG
AACCATGTAAAAAGCCTCCAAGATTGTGCAGGCAGGGATATGCTTGTCCA
CAATACCACAATAACAGGGATAGGAGGAGGAGCCCAAAGAAATATAAATA
TAGGTCTACACCATGCCCGAATGTAAAACACAGTGATGAATGGGGTGACC
CTGCAGCATGTGAAAATGGTGATAGTTGTGGTTATTGCCATACAAGGACT
GAACAACAGTTCCATCCTGAAatttacaAATCAACGAAATGTAACGATAT
GCAACAGACTGGACAATGCCCTAGAGGCCCCTTCTGCGCTTTTGCTCATA
TTGAGCGTAAGActacaattttaaattttcatttcaatgcaCAATTTTTC
TTGTCAGATCAATGAAAAACATATCCCATTAGGCTTTGCGCGACTTGTTT
TGCAAACAGAAAATATGGAGTAATGGCGGCCGATACTAATGAtgtgattt
ttggtacaaatttAACACCAAAAAAGAGCTTAACTGAGCTGAATCAGCCG
CAGACTGAAAAACCACTACACTATACGTATTTGAAAGAATTTCGTGTTGA
GCAGTGCCAACTATTTCTTCAACACAAATGCACTCAACATAGACCGTTCA
CTTGCTTCTCTTGGCATTTCCtcaatcaaaaaagaagaaggccaagaaag
aagaaagaaggaACTTTCAACTACAGTCCTGACGTTTATTGTCAACATTA
TAATGAAACGACTGGTGAATGCCTTAGTGGAGATGACTGTCCTTTTCTGC
ATCGTGTAGCTGGGGACGTTGAGCGTAGATACCATTTGCGATATTACAAG
ACATCACCTTGTGTTTACGAGACAGACCAAAGGGGATATTGTGTTAAGAA
CGGCCCACATTGTGCTTTTGCACACGGTCCACACGATTTAAGACAACCAG
TATACGATGTAAGAGAATTACAACTAATGGAGAACGAAGAAAAAGATGAG
AGCGGGAAACAAATTGTACCGGAAGACCCGAGATGGAATGAAACAAATTA
TGTACTAGCAAATTACAAGACAGAACCATGTAAAAAGCCTCCAAGATTGT
GCAGGCAGGGATATGCTTGTCCACAATACCACAATAACAGGGATAGGAGG
AGGAGCCCAAAGAAATATAAATATAGGTCTACACCATGCCCGAATGTAAA
ACACAGTGATGAATGGGGTGACCCTGCAGCATGTGAAAATGGTGATAGTT
GTGGTTATTGCCATACAAGGACTGAACAACAGTTCCATCCTGAAatttac
aAATCAACGAAATGTAACGATATGCAACAGACTGGACAATGCCCTAGAGG
CCCCTTCTGCGCTTTTGCTCATATTGAGCGTAAGActacaattttaaatt
ttcatttcaatgcaCAATTTTTCTTGTCAGATCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065700-exon-scaffold_443-1491911889:295624..295785 | TCONS_00065700-exon-scaffold_443-1491911889:295624..295785 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1510915933:295624..295785 | TCONS_00065700-exon-scaffold_443-1510915933:295624..295785 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1575043694:295624..295785 | TCONS_00065700-exon-scaffold_443-1575043694:295624..295785 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1491911889:305119..305328 | TCONS_00065700-exon-scaffold_443-1491911889:305119..305328 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1510915933:305119..305328 | TCONS_00065700-exon-scaffold_443-1510915933:305119..305328 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1575043694:305119..305328 | TCONS_00065700-exon-scaffold_443-1575043694:305119..305328 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1491911889:305940..306193 | TCONS_00065700-exon-scaffold_443-1491911889:305940..306193 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1510915933:305940..306193 | TCONS_00065700-exon-scaffold_443-1510915933:305940..306193 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1575043694:305940..306193 | TCONS_00065700-exon-scaffold_443-1575043694:305940..306193 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1491911889:306603..306738 | TCONS_00065700-exon-scaffold_443-1491911889:306603..306738 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1510915933:306603..306738 | TCONS_00065700-exon-scaffold_443-1510915933:306603..306738 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1575043694:306603..306738 | TCONS_00065700-exon-scaffold_443-1575043694:306603..306738 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1491911889:307189..307306 | TCONS_00065700-exon-scaffold_443-1491911889:307189..307306 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1510915933:307189..307306 | TCONS_00065700-exon-scaffold_443-1510915933:307189..307306 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1575043694:307189..307306 | TCONS_00065700-exon-scaffold_443-1575043694:307189..307306 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1491911889:307646..307814 | TCONS_00065700-exon-scaffold_443-1491911889:307646..307814 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1510915933:307646..307814 | TCONS_00065700-exon-scaffold_443-1510915933:307646..307814 | Clytia hemisphaerica | exon |
| TCONS_00065700-exon-scaffold_443-1575043694:307646..307814 | TCONS_00065700-exon-scaffold_443-1575043694:307646..307814 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_443 | supercontig | scaffold_443:295624..307814 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000571 | Znf_CCCH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
BLAST of TCONS_00065700 vs. Swiss-Prot (Human)
Match: UNK (RING finger protein unkempt homolog OS=Homo sapiens GN=UNK PE=1 SV=2) HSP 1 Score: 423.705 bits (1088), Expect = 4.679e-141 Identity = 211/301 (70.10%), Postives = 242/301 (80.40%), Query Frame = 2
Query: 119 TELNQPQTEKPLHYTYLKEFRVEQCQLFLQHKCTQHRPFTCFSWHFLNQKRRRPRKKKEGTFNYSPDVYCQHYNETTGECLSGDDCPFLHRVAGDVERRYHLRYYKTSPCVYETDQRGYCVKNGPHCAFAHGPHDLRQPVYDVRELQLME-----------NEEKDESG-------KQIVPEDPRWNETNYVLANYKTEPCKKPPRLCRQGYACPQYHNNXXXXXXXXXXXXXXTPCPNVKHSDEWGDPAACENGDSCGYCHTRTEQQFHPEIYKSTKCNDMQQTGQCPRGPFCAFAHIER 967
++ Q Q EKP HYTYLKEFR EQC LF+QHKCTQHRP+TCF WHF+NQ+RRR ++++GTFNYSPDVYC Y+E TG C GD+CPFLHR GD ERRYHLRYYKT C++ETD +G C KNG HCAFAHGPHDLR PVYD+RELQ ME + E +G ++I+ E+PRW ET YVL NYKTEPCKKPPRLCRQGYACP YHN++DRRRSP+K+KYRS+PCPNVKH DEWGDP CENGD+C YCHTRTEQQFHPEIYKSTKCNDMQQ+G CPRGPFCAFAH+E+
Sbjct: 21 AQVLQAQPEKPQHYTYLKEFRTEQCPLFVQHKCTQHRPYTCFHWHFVNQRRRRSIRRRDGTFNYSPDVYCTKYDEATGLCPEGDECPFLHRTTGDTERRYHLRYYKTGICIHETDSKGNCTKNGLHCAFAHGPHDLRSPVYDIRELQAMEALQNGQTTVEGSIEGQSAGAASHAMIEKILSEEPRWQETAYVLGNYKTEPCKKPPRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCENGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQ 321
The following BLAST results are available for this feature:
|
