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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065699 ID=TCONS_00065699|Name=TCONS_00065699|organism=Clytia hemisphaerica|type=transcript|length=814bp
CGCCGCAGAAAACACAGCAACCATATTGTATTTCTAAACCTAatgaaaag
tgacgtcaaaatactgtattcaataaaaatatatttgacgtcaaaaattg
aTCGGTAACCCAGGATACTTGCATTGAAACCAAACataaaaaacaataaa
caaaatctttcataACCATCAATACACAGCTCTCTACTTGGATCAAGCAG
CAAAAGCTACACAACCTACTTTATAAATCTCTAATTTAATCTACACGTAA
ACCACACTACTATATTTATAACAATGGAAGGTTGGCTTAGAAGTGAATGC
AATTGCAAATCCGCTGGCTCCGCGTCTTCTAGCTATACATCACCATCAGG
AAACAGTAAACCACAGAATCGTTATCTTTGCTATTTATtagatgaatttg
aaaaatgctCGCAACAAAGTAACGATCTTTCCAAGATACAAAAGgAACAT
CAACAAATGAAAAAGGATATCGCAGATGCTCAACGAGATATCCGTGATTT
GAAATTCGAAAAACAGCTTTTAGCTGAGAAGGTCACATCCCTACAACGTG
AAATGCAAGAACAAAAATTGCTTCACTCGCAACTCCGTGATGAAGCGAGT
AGCGAGTTTCGAAGTTTATACCGAAAAGCTGGCAAtcatgaaaaggatgt
tgattTGTTGAAATATCAACTCAAAATGAGCACCAAAAAGTATGCTTTGG
ATTTGGAGAATATGCGATGGGAGATGTCAACCAACcgaaaatacaattca
aaatttAACGCTTCAGAGCTTGTTGACGATGACAAACAATAAATTTCATC
TTTCATAATtaaat Run BLAST on NCBI transcript from alignment at scaffold_443:274941..276841+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065699 ID=TCONS_00065699|Name=TCONS_00065699|organism=Clytia hemisphaerica|type=transcript|length=1901bp|location=Sequence derived from alignment at scaffold_443:274941..276841+ (Clytia hemisphaerica)
CGCCGCAGAAAACACAGCAACCATATTGTATTTCTAAACCTAatgaaaag
tgacgtcaaaatactgtattcaataaaaatatatttgacgtcaaaaattg
aTCGGTAACCCAGGATACTTGCATTGAAACCAAACataaaaaacaataaa
caaaatctttcataACCATCAATACACAGCTCTCTACTTGGATCAAGCAG
CAAAAGCTACACAACCTACTTTATAAATCTCTAATTTAATCTACACGTAA
ACCACACTACTATATTTATAACAATGGAAGGTTGGCTTAGAAGTGAATGC
AATTGCAAATCCGCTGGCTCCGCGTCTTCTAGCTATACATCACCATCAGG
AAACAGTAAACCACAGAATCGTTATCTTTGCTATTTATtagatgaatttg
aaaaatgctCGCAACAAAGTAACGATCTTTCCAAGATACAAAAGGTATTT
ATAAAATTTGCGGCTTGAAGTAATTTCCTTTTTGCCTTTTATTGTATTTG
TCTGTAAATACACCCAATATATCTacgtaaatttcaaaattcattgctgt
aCTCCACTAACGAGGTTTATAAAGCTTGTAAAAATTCGAATTTGAAAGAA
GGTTTCCCTGAATTAAGCAGCTCAATGATTAAAGACTTCATTATTACTAT
TAGTAATCTTCTTCGTTGCAGGGACGTCGTAACAGGGAGGAAGAGGGGGC
TTTTTTATAACCTTCAAATTGCCTAAACTGATCTCTTTCAGAAAGACTTC
CAGCTAAAATTTGGCCAGAATATATAACCCgacttaaaattgtttttttt
ctaggAACATCAACAAATGAAAAAGGATATCGCAGATGCTCAACGAGATA
TCCGTGATTTGAAATTCGAAAAACAGGTACGTAAAATAGTTAGTTGGAAC
CGTAAAATAGCTAGTTAGCACCGTAAAATAGTTAGTTAGCACCGCAAAAT
AGTTAGTTGGCACCGCAAAATAGTTAGTTAGCACCGTAAAATAGTTAGTT
GGCAGTGACTTATACATTATCAAAGGGTATGAAATTACTTGTGGAAAAAC
TACTTTGTACAAGGGgacaaataaaatttaaaacttgTTGGGGTTTTTAA
GAgcgtcaaaattttttgaagcttcagaatgttcttaacttttcggctTT
TAAGACTGAAAAAGTTCTTAACGTGTTAATATTtttaatactattttttg
aGTTACGTGATCTAAGTCTTGAATCGTTTTTAGACTGTGCTAAAATTTCA
GGCCTAGAAGCCTTATTTTCTTGTATAAATAACGTGTGTACTGATAAAAT
GCTATAGACTCTTCTAGACGTTTTTTCTCCGATTCTATACATGTAGATTT
AAACTAACCAGTCATTCTTTTCTTCATAGCTTTTAGCTGAGAAGGTCACA
TCCCTACAACGTGAAATGCAAGAACAAAAATTGCTTCACTCGCAACTCCG
TGATGAAGCGAGTAGCGAGTTTCGAAGTTTATACCGAAAAGCTGGCAAtc
atgaaaaggatgttgattTGTTGAAATATCAACTCAAAATGAGCACCAAA
AAGGTATACCCATTGATTTGGTAGGGACTAGATCCGAAACTCACGGATAG
GAAATGAAGTCACTATTTCCCAACCAGAACAAGTGACCCGTgtgtttttt
aaacaaaacttttaaatgcGGGCAaatttaaggcttcactttttcttgac
GAAAGGTTGAGTTAAGACTTACACGTTAAGCTTcgtaattttaatatttt
ctacCAATTTTAATTTATTCACTTTAGTATGCTTTGGATTTGGAGAATAT
GCGATGGGAGATGTCAACCAACcgaaaatacaattcaaaatttAACGCTT
CAGAGCTTGTTGACGATGACAAACAATAAATTTCATCTTTCATAATtaaa
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065699-exon-scaffold_443-1491911889:274941..275384 | TCONS_00065699-exon-scaffold_443-1491911889:274941..275384 | Clytia hemisphaerica | exon |
| TCONS_00065699-exon-scaffold_443-1510915933:274941..275384 | TCONS_00065699-exon-scaffold_443-1510915933:274941..275384 | Clytia hemisphaerica | exon |
| TCONS_00065699-exon-scaffold_443-1575043694:274941..275384 | TCONS_00065699-exon-scaffold_443-1575043694:274941..275384 | Clytia hemisphaerica | exon |
| TCONS_00065699-exon-scaffold_443-1491911889:275745..275816 | TCONS_00065699-exon-scaffold_443-1491911889:275745..275816 | Clytia hemisphaerica | exon |
| TCONS_00065699-exon-scaffold_443-1510915933:275745..275816 | TCONS_00065699-exon-scaffold_443-1510915933:275745..275816 | Clytia hemisphaerica | exon |
| TCONS_00065699-exon-scaffold_443-1575043694:275745..275816 | TCONS_00065699-exon-scaffold_443-1575043694:275745..275816 | Clytia hemisphaerica | exon |
| TCONS_00065699-exon-scaffold_443-1491911889:276320..276493 | TCONS_00065699-exon-scaffold_443-1491911889:276320..276493 | Clytia hemisphaerica | exon |
| TCONS_00065699-exon-scaffold_443-1510915933:276320..276493 | TCONS_00065699-exon-scaffold_443-1510915933:276320..276493 | Clytia hemisphaerica | exon |
| TCONS_00065699-exon-scaffold_443-1575043694:276320..276493 | TCONS_00065699-exon-scaffold_443-1575043694:276320..276493 | Clytia hemisphaerica | exon |
| TCONS_00065699-exon-scaffold_443-1491911889:276718..276841 | TCONS_00065699-exon-scaffold_443-1491911889:276718..276841 | Clytia hemisphaerica | exon |
| TCONS_00065699-exon-scaffold_443-1510915933:276718..276841 | TCONS_00065699-exon-scaffold_443-1510915933:276718..276841 | Clytia hemisphaerica | exon |
| TCONS_00065699-exon-scaffold_443-1575043694:276718..276841 | TCONS_00065699-exon-scaffold_443-1575043694:276718..276841 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_443 | supercontig | scaffold_443:274941..276841 + |
Blast
The following BLAST results are available for this feature:
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