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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065697 ID=TCONS_00065697|Name=TCONS_00065697|organism=Clytia hemisphaerica|type=transcript|length=1230bp
GAGGGTGGTGAAGTGATTAGTAGATATACTTCCTAATATAGAAACTCTTT
TTTCTAGAGGATGAACAGACACCTACGAAGTGATTGAAACAATTTGAACA
GTCTAAGTAAAATTGCTCATTTGCCATTACCTTTGGTTAAGATCTGGAAC
ATTAGAAAACTAACCATCTCCGTTACAGAAAAAGCAACATACTCGTTACA
GCTATATTTCGGGCAGAGTAAGCTTTAATTCAAGCATGATGAACTACCTT
GATGATTATAAGCGATTTGAAGCTGCGGTAAACGAAGTCCACTCATACAA
TGATAAAGTTTCTTACTTAAACTACGTAAAGACGTATCGCAGCATAACTG
AGAAATACAAAATAACATGGGACCAATTGATGTCGTTTATCAATATAACA
ATGAAAGGCCATTTATCTCAAGATCAGATCAACCACATGAAACTTGCTCT
GGAATACGGGAAACTTGAAGAATATCGGATAGAAGTCCAATATTATTGTT
TTCGAGTTTTCGTCGCACTAGCTGTATTCGGTATCCTTGGTAACACATCC
ATAATGGCGCATTTTATTCGGCAAAATATAATAAAGAACAGAACTCTGTC
GAAAATGAAAGCATACCATTTTTTGGTCACGCTACTAGCATTAGTTGATG
CTCTTTACTGTGGTTTCCTTACGTTTAGTAATTATAACGATTGGCAAAAT
AGTAGTTACCCACTTAGTGAATTTGCTTGCGTATACGCAATGCCGTTTGC
GCACTACATATTTCCGTATCTATCTTTATGGTTAGTGGCTTTTATTTCTT
ACGAAAGGTACAAAAACATAGTTCATCCGTTTGCAGAAAAAACGACCGTA
AAGATATATGCAGCTCTCTCATTCGGTGTTATCTGTATTTGCGCTGGATT
GACGTACGCGCAAATTGAAACGTTATCTCCACTTTTACATGGTGAGCCTG
GCAGATACAACTGTTATCCGATATGGGATGTAGATCTATTAAATTTCCAT
TTAACTTTCCTGTTTGGCTATGCATTACCGTTACTTAGTTCGACTGGATT
CATGTTGTATTATTATTTCAAGATTTCACGTTACATGCAACGTGAATCAA
GAAGGGTTCAAAACGTAATGGAAGTCGGTGAACGTATTCAAAAGCGTAAT
AAAAAAGCGTTGAAAGTTCTATTATTTTTAATTCTAATTTTCATCCTTAC
CATCATGCCAGCTCGAAGTTTTTACTATTT Run BLAST on NCBI protein sequence of TCONS_00065697-protein >TCONS_00065697-protein ID=TCONS_00065697-protein|Name=TCONS_00065697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MMNYLDDYKRFEAAVNEVHSYNDKVSYLNYVKTYRSITEKYKITWDQLMS
FINITMKGHLSQDQINHMKLALEYGKLEEYRIEVQYYCFRVFVALAVFGI
LGNTSIMAHFIRQNIIKNRTLSKMKAYHFLVTLLALVDALYCGFLTFSNY
NDWQNSSYPLSEFACVYAMPFAHYIFPYLSLWLVAFISYERYKNIVHPFA
EKTTVKIYAALSFGVICICAGLTYAQIETLSPLLHGEPGRYNCYPIWDVD
LLNFHLTFLFGYALPLLSSTGFMLYYYFKISRYMQRESRRVQNVMEVGER
IQKRNKKALKVLLFLILIFILTIMPARSFYY Run BLAST on NCBI transcript from alignment at scaffold_443:264017..265301+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065697 ID=TCONS_00065697|Name=TCONS_00065697|organism=Clytia hemisphaerica|type=transcript|length=1285bp|location=Sequence derived from alignment at scaffold_443:264017..265301+ (Clytia hemisphaerica)
GAGGGTGGTGAAGTGATTAGTAGATATACTTCCTAATATAGAAACTCTTT
TTTCTAGAGGATGAACAGACACCTACGAAGTGATTGAAACAATTTGAACA
GTCTAAGTAAAATTGCTCATTTGCCATTACCTTTGGTTAAGATCTGGAAC
ATTAGAAAACTAACCATCTCCGTTACAGAAAAAGCAACATACTCGTTACA
GCTATATTTCGGGCAGAGTAAGCTTTAATTCAAGCATGATGAACTACCTT
GATGATTATAAGCGATTTGAAGCTGCGGTAAACGAAGTCCACTCATACAA
TGATAAAGTTTCTTACTTAAACTACGTAAAGACGTATCGCAGCATAACTG
AGAAATACAAAATAACATGGGACCAATTGATGTCGTTTATCAATATAACA
ATGAAAGGCCATTTATCTCAAGATCAGATCAACCACATGAAACTTGCTCT
GGAATACGGGAAACTTGAAGAATATCGGATAGAAGTCCAATATTATTGTT
TTCGAGTTTTCGTCGCACTAGCTGTATTCGGTATCCTTGGTAACACATCC
ATAATGGCGCATTTTATTCGGCAAAATATAATAAAGAACAGAACTCTGTC
GAAAATGAAAGCATACCATTTTTTGGTCACGCTACTAGCATTAGTTGATG
CTCTTTACTGTGGTTTCCTTACGTTTAGTAATTATAACGATTGGCAAAAT
AGTAGTTACCCACTTAGTGAATTTGCTTGCGTATACGCAATGCCGTTTGC
GCACTACATATTTCCGTATCTATCTTTATGGTTAGTGGCTTTTATTTCTT
ACGAAAGGTACAAAAACATAGTTCATCCGTTTGCAGAAAAAACGACCGTA
AAGATATATGCAGCTCTCTCATTCGGTGTTATCTGTATTTGCGCTGGATT
GACGTACGCGCAAATTGAAACGTTATCTCCACTTTTACATGGTGAGCCTG
GCAGATACAACTGTTATCCGATATGGGATGTAGATCTATTAAATTTCCAT
TTAACTTTCCTGTTTGGCTATGCATTACCGTTACTTAGTTCGACTGGATT
CATGTTGTATTATTATTTCAAGATTTCACGTTACATGCAACGTGAATCAA
GAAGGGTTCAAAACGTAATGGAAGTCGGTGAACATATTCAANAAACGCGA
ATCAAGAAGGGTTCAAAACGTAATGGAAGTCGGTGAACGTATTCAAAAGC
GTAATAAAAAAGCGTTGAAAGTTCTATTATTTTTAATTCTAATTTTCATC
CTTACCATCATGCCAGCTCGAAGTTTTTACTATTT Coding sequence (CDS) from alignment at scaffold_443:264017..265301+ >TCONS_00065697 ID=TCONS_00065697|Name=TCONS_00065697|organism=Clytia hemisphaerica|type=CDS|length=1986bp|location=Sequence derived from alignment at scaffold_443:264017..265301+ (Clytia hemisphaerica)
ATGATGAACTACCTTGATGATTATAAGCGATTTGAAGCTGCGGTAAACGA
AGTCCACTCATACAATGATAAAGTTTCTTACTTAAACTACGTAAAGACGT
ATCGCAGCATAACTGAGAAATACAAAATAACATGGGACCAATTGATGTCG
TTTATCAATATAACAATGAAAGGCCATTTATCTCAAGATCAGATCAACCA
CATGAAACTTGCTCTGGAATACGGGAAACTTGAAGAATATCGGATAGAAG
TCCAATATTATTGTTTTCGAGTTTTCGTCGCACTAGCTGTATTCGGTATC
CTTGGTAACACATCCATAATGGCGCATTTTATTCGGCAAAATATAATAAA
GAACAGAACTCTGTCGAAAATGAAAGCATACCATTTTTTGGTCACGCTAC
TAGCATTAGTTGATGCTCTTTACTGTGGTTTCCTTACGTTTAGTAATTAT
AACGATTGGCAAAATAGTAGTTACCCACTTAGTGAATTTGCTTGCGTATA
CGCAATGCCGTTTGCGCACTACATATTTCCGTATCTATCTTTATGGTTAG
TGGCTTTTATTTCTTACGAAAGGTACAAAAACATAGTTCATCCGTTTGCA
GAAAAAACGACCGTAAAGATATATGCAGCTCTCTCATTCGGTGTTATCTG
TATTTGCGCTGGATTGACGTACGCGCAAATTGAAACGTTATCTCCACTTT
TACATGGTGAGCCTGGCAGATACAACTGTTATCCGATATGGGATGTAGAT
CTATTAAATTTCCATTTAACTTTCCTGTTTGGCTATGCATTACCGTTACT
TAGTTCGACTGGATTCATGTTGTATTATTATTTCAAGATTTCACGTTACA
TGCAACGTGAATCAAGAAGGGTTCAAAACGTAATGGAAGTCGGTGAACGT
ATTCAAAAGCGTAATAAAAAAGCGTTGAAAGTTCTATTATTTTTAATTCT
AATTTTCATCCTTACCATCATGCCAGCTCGAAGTTTTTACTATATGATGA
ACTACCTTGATGATTATAAGCGATTTGAAGCTGCGGTAAACGAAGTCCAC
TCATACAATGATAAAGTTTCTTACTTAAACTACGTAAAGACGTATCGCAG
CATAACTGAGAAATACAAAATAACATGGGACCAATTGATGTCGTTTATCA
ATATAACAATGAAAGGCCATTTATCTCAAGATCAGATCAACCACATGAAA
CTTGCTCTGGAATACGGGAAACTTGAAGAATATCGGATAGAAGTCCAATA
TTATTGTTTTCGAGTTTTCGTCGCACTAGCTGTATTCGGTATCCTTGGTA
ACACATCCATAATGGCGCATTTTATTCGGCAAAATATAATAAAGAACAGA
ACTCTGTCGAAAATGAAAGCATACCATTTTTTGGTCACGCTACTAGCATT
AGTTGATGCTCTTTACTGTGGTTTCCTTACGTTTAGTAATTATAACGATT
GGCAAAATAGTAGTTACCCACTTAGTGAATTTGCTTGCGTATACGCAATG
CCGTTTGCGCACTACATATTTCCGTATCTATCTTTATGGTTAGTGGCTTT
TATTTCTTACGAAAGGTACAAAAACATAGTTCATCCGTTTGCAGAAAAAA
CGACCGTAAAGATATATGCAGCTCTCTCATTCGGTGTTATCTGTATTTGC
GCTGGATTGACGTACGCGCAAATTGAAACGTTATCTCCACTTTTACATGG
TGAGCCTGGCAGATACAACTGTTATCCGATATGGGATGTAGATCTATTAA
ATTTCCATTTAACTTTCCTGTTTGGCTATGCATTACCGTTACTTAGTTCG
ACTGGATTCATGTTGTATTATTATTTCAAGATTTCACGTTACATGCAACG
TGAATCAAGAAGGGTTCAAAACGTAATGGAAGTCGGTGAACGTATTCAAA
AGCGTAATAAAAAAGCGTTGAAAGTTCTATTATTTTTAATTCTAATTTTC
ATCCTTACCATCATGCCAGCTCGAAGTTTTTACTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065697-exon-scaffold_443-1491911889:264017..265149 | TCONS_00065697-exon-scaffold_443-1491911889:264017..265149 | Clytia hemisphaerica | exon |
| TCONS_00065697-exon-scaffold_443-1510915933:264017..265149 | TCONS_00065697-exon-scaffold_443-1510915933:264017..265149 | Clytia hemisphaerica | exon |
| TCONS_00065697-exon-scaffold_443-1575043694:264017..265149 | TCONS_00065697-exon-scaffold_443-1575043694:264017..265149 | Clytia hemisphaerica | exon |
| TCONS_00065697-exon-scaffold_443-1491911889:265205..265301 | TCONS_00065697-exon-scaffold_443-1491911889:265205..265301 | Clytia hemisphaerica | exon |
| TCONS_00065697-exon-scaffold_443-1510915933:265205..265301 | TCONS_00065697-exon-scaffold_443-1510915933:265205..265301 | Clytia hemisphaerica | exon |
| TCONS_00065697-exon-scaffold_443-1575043694:265205..265301 | TCONS_00065697-exon-scaffold_443-1575043694:265205..265301 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_443 | supercontig | scaffold_443:264017..265301 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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