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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065693 ID=TCONS_00065693|Name=TCONS_00065693|organism=Clytia hemisphaerica|type=transcript|length=1497bp
gattTTAAATTGTAAACGAAAAATAGACGGGTCGTCAGTCAGTCGTCGAC
AAGAAAACAAGATGGAGTAACGTAGAAAGATTTTCGCTTTACTCCCCAAC
CAAGCAGGTGcttgcacttgaaaaaaaataaagaaaaaaatggcCTCCCA
AAATGGATCAAACCGCTTCGCCTCTGGCACcttaaacaaaaataatcatG
AGCAGAACAAGAATCAGTTCGAAAATGGAACACAACAACAAATTGAATTC
GCTTTCGATGCTTCCAGGCAGCATCCTCAATGCCTGTAGTTTCAACAATG
ACACCGATGCCACCTTTCAACTTCTCTTCAACAACAAATCATTGGAGAAC
GAGAAACAATCGTGCAATGGATATGGTGTCAATAATATTTCAGaAACCAA
CAACTCTTTGTTGAAAACATTAGATTTCATTGATTCCAACATCAACGAAT
ATCCATCAGTGAAATCAGAAACCTACACTCTGGATGATCTACTAGATCTG
GAAAATGAAGAGCTGGCACAAGTCCCTTATTACTATGACAACGCATCTTT
TGATGACGAATCATTATTTGTACCATCAACTGAGATTCTAATGGATACTG
CCTTAGCTTCGCCTTTGTCATCAAGCAGCGATGAATCTTGCGATTTAAAT
GATCTCTTATTTATGTGCGATCAAGCTGCAGAAACCCGGACCCAAGAGCA
GCCAGCTTCTGTTCAGGAAGTTACCGACCACCAATACGCTCTTTTGGAAG
ATGCTCCAAAAGCAGACCAGGAAATCTCATTAGAGGATATGCTTGCTGGT
AATACAACAGATTTAAGTGCACTTTGTTCGCTTTTGTTTCAAGCAAAAGG
AATTGAAGCACCTGAATTTTCTGCACTTGAAGAACAACCGACGACTGTTC
TCGAAGAACCAACAGTCAGTGCTCCATTGTCTCCAGCTTCTTCAGTTACG
TCTTCAGAATCCGAATCTGAATCACGTCCAGCCCGTTACAAGCCATACAG
AAAGCAAAAGACCCCCGAACAGAAATTACGTAAGAAAGCTCAGAACCGTA
CCGCAGCTACTCGATACCGAGTCAAGAAGAAGGATGAGTTAAAAATTATG
ACGGATGAAGCAGACAAACTGGAAGAAACCAACAAGGATTTGAAAGGGAA
AGTTGATGGATTACGTAATGAGATAGATTATTTGAAGAATTTGATGTTGG
ATGTAATTAAAGCTCGATTAGCGAAAGGAGCAACCCCTGATGCTCTTCTC
TCTGCAGCAGCTTTAatgttaaaatgaaaatgaagttttcaaTTAAAGAG
ACAATGTTGtcattttatgaaatatttttttgaaccaTAGACATTGTGAt
ttgtttcttagtttttgtaTATAGTTTGTTTGTTGAATAATGGGTTATCT
TGCTCCTTCACATTTAAAAACTCCGTCTCAGAATTTCCTATCCTATCCTA
AGACAAAtaaagacaaatcactatctcagaaataagcccaaagccga Run BLAST on NCBI protein sequence of TCONS_00065693-protein >TCONS_00065693-protein ID=TCONS_00065693-protein|Name=TCONS_00065693-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MSRTRISSKMEHNNKLNSLSMLPGSILNACSFNNDTDATFQLLFNNKSLE
NEKQSCNGYGVNNISETNNSLLKTLDFIDSNINEYPSVKSETYTLDDLLD
LENEELAQVPYYYDNASFDDESLFVPSTEILMDTALASPLSSSSDESCDL
NDLLFMCDQAAETRTQEQPASVQEVTDHQYALLEDAPKADQEISLEDMLA
GNTTDLSALCSLLFQAKGIEAPEFSALEEQPTTVLEEPTVSAPLSPASSV
TSSESESESRPARYKPYRKQKTPEQKLRKKAQNRTAATRYRVKKKDELKI
MTDEADKLEETNKDLKGKVDGLRNEIDYLKNLMLDVIKARLAKGATPDAL
LSAAALMLK Run BLAST on NCBI transcript from alignment at scaffold_443:175926..179882+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065693 ID=TCONS_00065693|Name=TCONS_00065693|organism=Clytia hemisphaerica|type=transcript|length=3957bp|location=Sequence derived from alignment at scaffold_443:175926..179882+ (Clytia hemisphaerica)
gattTTAAATTGTAAACGAAAAATAGACGGGTGTTagcaatttttttcat
ataatcacttttcatttatcatcataaattttgcatattTAGAGCAATGG
AAAGtatacaattttatttttcagtttatAGATTAAGTTTTAGTACCTTT
AACGGGACAAATAAACTCTTCGAAATAGGTTTAGTTCTACATTTGAACCC
CTTGAAATGTCGAATCCAAAGGTTATTCATCCATGTGAATAGCGCATGGA
TATTATTCTCAAAACATTGATTCGAATTCACGCTGATTGGTTACTTCTAC
ATTTTACACGATCTGATTGGTTGTCGATGACGTACATCCTGAAAAATTGC
ATCAGCAGAcgattttctttttatctttgttgATTTTCAGCGTCAGTCAG
TCGTCGACAAGAAAACAAGATGGAGTAACGTAGAAAGATTTTCGCTTTAC
TCCCCAACCAAGCAGGTGcttgcacttgaaaaaaaataaagaaaaaaatg
gcgtAAGTGTTTTCTCttaaaattaaacttttcaaaTAAGTCTATCACTA
AATGTTCGTGTTAAAACATTCCCTGTAGCATCCCATGTTTAAAAACCCTG
TTCAGTGTACCCAGTTCTTCTTATTAGTTTCACAGGTTCCttcattttat
attatatttttgctTTACTTATACCTTCAAACAGAGTCTTTAATTCAACA
TGTCTTTGGTTcttgatataaattattttgaaaagttcTGGTTTAATATA
TATCTATTGACGGTTTTGCTTAAGATTCCCTTCCTTTTTACTAAGATGTT
CTAAGATTCCTCTGCCACTCTTCTACCAGAAAAAGACCAGAACTCATTGT
AGTTGATAAATGAGCTTTGGAAAGTAAGGCAGGAAGTAAGGAAGCACAAG
ACTAGCAGTATCTTTAGAGGAAAACCCTCATGCTGTCTTCCCGTGAAAAA
TAGCAGAAAAATCCTGGAAAAGTGGTCAAGAATCTAAGTGCAGTCGAATG
GGGGACTCTTAtgcaaaacaacaattttttcattaatctcattgtattag
agaaatgaCCAAACAGAGGTCTGCCTAAATTTCATTACCGTTGATTCTGC
TTGCAAAAGTTTGCCTAAAGTATCCAGTTCTTCTATATCAGACAAATTTC
CCTCTCACTAAAAAGATTTCTACTGAAGATTTCTacaaaaatgtccaaaa
aaattttgtgaggtcaaatttttatgagaataaccaaaatttgcaaaaac
tgAAATTACTATTATTATCAATTATCAAAGTAAAATTTATGGAGAAACTC
TGAATAGGGCACTTTGATAAGGGGTTTTAGCCTAGCAGAGCCTAGAATAC
GtatagaaaaagaaaacttgGAATCCTAATATTTATTTGATCTGGaattt
gcttcaaattatttAGTCAACTATttattttcttcacttttagCTCCCAA
AATGGATCAAACCGCTTCGCCTCTGGCACcttaaacaaaaataatcatGA
GCAGAACAAGAATCAGTTCGAAAATGGAACACAACAACAAATTGAATTCG
CTTTCGATGCTTCCAGGCAGCATCCTCAATGCCTGTAGTTTCAACAATGA
CACCGATGCCACCTTTCAACTTCTCTTCAACAACAAATCATTGGAGAACG
AGAAACAATCGTGCAATGGATATGGTGTCAATAATATTTCAGGTAAATAT
CTTNCACCTTTCAACTTCTCTTCAACAACAAATCATTGGAGAACGAGAAA
CAATCGTGCAATGGATATGGTGTCAATAATATTTCAagtaaatatctttg
tttcaattttatttagtcCACCTTATTATCTTTAATGAGCAACCCTAACT
TTATTCCTAGCCAAGGTTGCTTAGTATATATCAGTAAATGTGAGAAATTG
GCTATGATCATTCCTGACGTTATATTATTTTATGTCTATAGGGTCAAAGG
GCTTTAACTTTGTCATAGTTAGATAAATCTTCTAAAAGTTTTCTTTATGG
AATAATAAAAAAGGATCTTGCTGGCAGGGCTCAAGCCTATATTAAAATTA
AGATGAATTCAGAtgaattcacaaaaaaattctacATAAGCAGCTGTTTT
AAAATTAATGTATACTCTATTATAGGTGCTCTACTATCCTTTAAGAGATA
AGCGATGAAACTGCATCAGTCCTCTGATTCAAAAGTCACTAAGATATAGA
CATCGAAAGAGAATTTTGTGATCATTTATTTTGCATTGAAGATGACAAAC
AGAAATTAAGATAAATTTTGTAATAATtaagtgaaagtttgaagaagaGC
ACATGACTGACTTCCTTCGacttttgattggttgattttctCTGATTAAG
GAAAAGGAAGTTACTGGTTTTGTAGTAATTATAGAAATTGTTGTCCTAAC
AGTTTTCGATAAGAAGAGCTAtccattttaatttctttatatCTCGTTAT
ATAAACTTCCTTTGGTAATTTAGAATCCTGTGattcaaaaaatagaaata
agctAATTAAAGATTTGGACCTTGTTTTGTTATAACCCATAACCATCAAT
CAATCTGTAAAATCGTTATTGACAAATAGATTGCAGTTATTGCCCTGCTA
TCTTTCTAGCTTATTAACCATGTAACAATTATCTCCCTGGCTGGCTATTC
AAATATATCTAGAATTCTTTGAATAAGaaaatcctttcaattaaaggAAA
GAGGCTCATCTGTTAGAATGGCAGAATAGTTTGGATATAAAATAAGTTAC
ACTAAAGGTACACTGTTGCCTCATATCGCTCTTTCTTGCCAACTTGATAA
TCTGTTGCACCCAATTATTACTTAACAGTgctctctttctttcttttctt
cagaAACCAACAACTCTTTGTTGAAAACATTAGATTTCATTGATTCCAAC
ATCAACGAATATCCATCAGTGAAATCAGAAACCTACACTCTGGATGATCT
ACTAGATCTGGAAAATGAAGAGCTGGCACAAGTCCCTTATTACTATGACA
ACGCATCTTTTGATGACGAATCATTATTTGTACCATCAACTGAGATTCTA
ATGGATACTGCCTTAGCTTCGCCTTTGTCATCAAGCAGCGATGAATCTTG
CGATTTAAATGATCTCTTATTTATGTGCGATCAAGCTGCAGAAACCCGGA
CCCAAGAGCAGCCAGCTTCTGTTCAGGAAGTTACCGACCACCAATACGCT
CTTTTGGAAGATGCTCCAAAAGCAGACCAGGAAATCTCATTAGAGGATAT
GCTTGCTGGTAATACAACAGATTTAAGTGCACTTTGTTCGCTTTTGTTTC
AAGCAAAAGGAATTGAAGCACCTGAATTTTCTGCACTTGAAGAACAACCG
ACGACTGTTCTCGAAGAACCAACAGTCAGTGCTCCATTGTCTCCAGCTTC
TTCAGTTACGTCTTCAGAATCCGAATCTGAATCACGTCCAGCCCGTTACA
AGCCATACAGAAAGCAAAAGACCCCCGAACAGAAATTACGTAAGAAAGCT
CAGAACCGTACCGCAGCTACTCGATACCGAGTCAAGAAGAAGGATGAGTT
AAAAATTATGACGGATGAAGCAGACAAACTGGAAGAAACCAACAAGGATT
TGAAAGGGAAAGTTGATGGATTACGTAATGAGATAGATTATTTGAAGAAT
TTGATGTTGGATGTAATTAAAGCTCGATTAGCGAAAGGAGCAACCCCTGA
TGCTCTTCTCTCTGCAGCAGCTTTAatgttaaaatgaaaatgaagttttc
aaTTAAAGAGACAATGTTGtcattttatgaaatatttttttgaaccaTAG
ACATTGTGAtttgtttcttagtttttgtaTATAGTTTGTTTGTTGAATAA
TGGGTTATCTTGCTCCTTCACATTTAAAAACTCCGTCTCAGAATTTCCTA
TCCTATCCTAAGACAAAtaaagacaaatcactatctcagaaataagccca
aagccga Coding sequence (CDS) from alignment at scaffold_443:175926..179882+ >TCONS_00065693 ID=TCONS_00065693|Name=TCONS_00065693|organism=Clytia hemisphaerica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_443:175926..179882+ (Clytia hemisphaerica)
atGAGCAGAACAAGAATCAGTTCGAAAATGGAACACAACAACAAATTGAA
TTCGCTTTCGATGCTTCCAGGCAGCATCCTCAATGCCTGTAGTTTCAACA
ATGACACCGATGCCACCTTTCAACTTCTCTTCAACAACAAATCATTGGAG
AACGAGAAACAATCGTGCAATGGATATGGTGTCAATAATATTTCAGaAAC
CAACAACTCTTTGTTGAAAACATTAGATTTCATTGATTCCAACATCAACG
AATATCCATCAGTGAAATCAGAAACCTACACTCTGGATGATCTACTAGAT
CTGGAAAATGAAGAGCTGGCACAAGTCCCTTATTACTATGACAACGCATC
TTTTGATGACGAATCATTATTTGTACCATCAACTGAGATTCTAATGGATA
CTGCCTTAGCTTCGCCTTTGTCATCAAGCAGCGATGAATCTTGCGATTTA
AATGATCTCTTATTTATGTGCGATCAAGCTGCAGAAACCCGGACCCAAGA
GCAGCCAGCTTCTGTTCAGGAAGTTACCGACCACCAATACGCTCTTTTGG
AAGATGCTCCAAAAGCAGACCAGGAAATCTCATTAGAGGATATGCTTGCT
GGTAATACAACAGATTTAAGTGCACTTTGTTCGCTTTTGTTTCAAGCAAA
AGGAATTGAAGCACCTGAATTTTCTGCACTTGAAGAACAACCGACGACTG
TTCTCGAAGAACCAACAGTCAGTGCTCCATTGTCTCCAGCTTCTTCAGTT
ACGTCTTCAGAATCCGAATCTGAATCACGTCCAGCCCGTTACAAGCCATA
CAGAAAGCAAAAGACCCCCGAACAGAAATTACGTAAGAAAGCTCAGAACC
GTACCGCAGCTACTCGATACCGAGTCAAGAAGAAGGATGAGTTAAAAATT
ATGACGGATGAAGCAGACAAACTGGAAGAAACCAACAAGGATTTGAAAGG
GAAAGTTGATGGATTACGTAATGAGATAGATTATTTGAAGAATTTGATGT
TGGATGTAATTAAAGCTCGATTAGCGAAAGGAGCAACCCCTGATGCTCTT
CTCTCTGCAGCAGCTTTAatgttaaaatgaatGAGCAGAACAAGAATCAG
TTCGAAAATGGAACACAACAACAAATTGAATTCGCTTTCGATGCTTCCAG
GCAGCATCCTCAATGCCTGTAGTTTCAACAATGACACCGATGCCACCTTT
CAACTTCTCTTCAACAACAAATCATTGGAGAACGAGAAACAATCGTGCAA
TGGATATGGTGTCAATAATATTTCAGaAACCAACAACTCTTTGTTGAAAA
CATTAGATTTCATTGATTCCAACATCAACGAATATCCATCAGTGAAATCA
GAAACCTACACTCTGGATGATCTACTAGATCTGGAAAATGAAGAGCTGGC
ACAAGTCCCTTATTACTATGACAACGCATCTTTTGATGACGAATCATTAT
TTGTACCATCAACTGAGATTCTAATGGATACTGCCTTAGCTTCGCCTTTG
TCATCAAGCAGCGATGAATCTTGCGATTTAAATGATCTCTTATTTATGTG
CGATCAAGCTGCAGAAACCCGGACCCAAGAGCAGCCAGCTTCTGTTCAGG
AAGTTACCGACCACCAATACGCTCTTTTGGAAGATGCTCCAAAAGCAGAC
CAGGAAATCTCATTAGAGGATATGCTTGCTGGTAATACAACAGATTTAAG
TGCACTTTGTTCGCTTTTGTTTCAAGCAAAAGGAATTGAAGCACCTGAAT
TTTCTGCACTTGAAGAACAACCGACGACTGTTCTCGAAGAACCAACAGTC
AGTGCTCCATTGTCTCCAGCTTCTTCAGTTACGTCTTCAGAATCCGAATC
TGAATCACGTCCAGCCCGTTACAAGCCATACAGAAAGCAAAAGACCCCCG
AACAGAAATTACGTAAGAAAGCTCAGAACCGTACCGCAGCTACTCGATAC
CGAGTCAAGAAGAAGGATGAGTTAAAAATTATGACGGATGAAGCAGACAA
ACTGGAAGAAACCAACAAGGATTTGAAAGGGAAAGTTGATGGATTACGTA
ATGAGATAGATTATTTGAAGAATTTGATGTTGGATGTAATTAAAGCTCGA
TTAGCGAAAGGAGCAACCCCTGATGCTCTTCTCTCTGCAGCAGCTTTAat
gttaaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065693-exon-scaffold_443-1491911889:175926..175957 | TCONS_00065693-exon-scaffold_443-1491911889:175926..175957 | Clytia hemisphaerica | exon |
| TCONS_00065693-exon-scaffold_443-1510915933:175926..175957 | TCONS_00065693-exon-scaffold_443-1510915933:175926..175957 | Clytia hemisphaerica | exon |
| TCONS_00065693-exon-scaffold_443-1575043694:175926..175957 | TCONS_00065693-exon-scaffold_443-1575043694:175926..175957 | Clytia hemisphaerica | exon |
| TCONS_00065693-exon-scaffold_443-1491911889:176316..176427 | TCONS_00065693-exon-scaffold_443-1491911889:176316..176427 | Clytia hemisphaerica | exon |
| TCONS_00065693-exon-scaffold_443-1510915933:176316..176427 | TCONS_00065693-exon-scaffold_443-1510915933:176316..176427 | Clytia hemisphaerica | exon |
| TCONS_00065693-exon-scaffold_443-1575043694:176316..176427 | TCONS_00065693-exon-scaffold_443-1575043694:176316..176427 | Clytia hemisphaerica | exon |
| TCONS_00065693-exon-scaffold_443-1491911889:177369..177617 | TCONS_00065693-exon-scaffold_443-1491911889:177369..177617 | Clytia hemisphaerica | exon |
| TCONS_00065693-exon-scaffold_443-1510915933:177369..177617 | TCONS_00065693-exon-scaffold_443-1510915933:177369..177617 | Clytia hemisphaerica | exon |
| TCONS_00065693-exon-scaffold_443-1575043694:177369..177617 | TCONS_00065693-exon-scaffold_443-1575043694:177369..177617 | Clytia hemisphaerica | exon |
| TCONS_00065693-exon-scaffold_443-1491911889:178779..179882 | TCONS_00065693-exon-scaffold_443-1491911889:178779..179882 | Clytia hemisphaerica | exon |
| TCONS_00065693-exon-scaffold_443-1510915933:178779..179882 | TCONS_00065693-exon-scaffold_443-1510915933:178779..179882 | Clytia hemisphaerica | exon |
| TCONS_00065693-exon-scaffold_443-1575043694:178779..179882 | TCONS_00065693-exon-scaffold_443-1575043694:178779..179882 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_443 | supercontig | scaffold_443:175926..179882 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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