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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065685 ID=TCONS_00065685|Name=TCONS_00065685|organism=Clytia hemisphaerica|type=transcript|length=1637bpRun BLAST on NCBI transcript from alignment at scaffold_442:66751..81321- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065685 ID=TCONS_00065685|Name=TCONS_00065685|organism=Clytia hemisphaerica|type=transcript|length=14571bp|location=Sequence derived from alignment at scaffold_442:66751..81321- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065685 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 250.366 bits (638), Expect = 9.736e-71 Identity = 131/285 (45.96%), Postives = 179/285 (62.81%), Query Frame = 2
Query: 452 IDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFGECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPINGKWGSWSGYGSCNRKCGTGSQKRTRSCNNPSPKYNGASCSGSSQQSRNCNTHSC 1306
+ GGF WS W CS +CG Q+R R CN P+P NGG C +L E R C CPVDG W+E+S + EC+ SCG G+Q RTR+C NP+ HGG+ CEG+ + C PCPV G W A+ + C++ CG G+Q+R+R CNNP P +GG C G+ T + CN +NCP+ GKW + ++S C+ CGGG++ R+R C++P P+YGG+ C GS S CN+ CP +G W WSG+G+C+R C G +R R+C+NP P G +C G Q + CNT C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDL-EMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 2 Score: 218.009 bits (554), Expect = 8.739e-60 Identity = 119/288 (41.32%), Postives = 166/288 (57.64%), Query Frame = 2
Query: 452 IDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFGECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPINGKWGSWSGYGSCNRKCGTGSQKRTRSCNNPSPKYNGASCSGSSQQSRNCNTHSCYSG 1315
+DG + WS W +C+ SCG Q R R+CNNP ++GG C E E C++ CPV G W+ + +G CS SCG G+Q R R C NP PA GG C+G++ Q C CP+ GKW + ++S C+ CGGG++ R+R C++P P+YGG+ C GS S CN+ CP G W + + C++ C GG R R+C+NP P GG+AC G + + CNT CP++G WGSW + C+ CG G + R R C++P P G C G + Q CN +C G
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPC-EGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPGG 4871 The following BLAST results are available for this feature:
BLAST of TCONS_00065685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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