TCONS_00065681 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065681
Unique NameTCONS_00065681
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1177

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065681 ID=TCONS_00065681|Name=TCONS_00065681|organism=Clytia hemisphaerica|type=transcript|length=1177bp
GGTAAATGGACAGAGTACAGTGAGTTCAGTGAATGTTCAGCCTCGTGTGG
AGGTGGATCACAAAAAAGAACACGATCTTGCACAAACCCTGCACCAGCAC
ATGGTGGAAAAGAATGCGAAGGATCTGATGAAGATGAACAAGAATGTGGA
ACTGATCCTTGTCCAGTCGACGGTAAATGGACAGAGTACAGTGAGTTCAG
TGAATGTTCAGCCTCGTGTGGAGGTGGATCACAAAAAAGAACACGATCTT
GCACAAACCCTGCACCAGCACATGGTGGTAAAGAATGCGAAGGATCTGAT
GAAGATGAACAAGAATGTGGAACTGATCCTTGCCCAGTTGATGGTAAATG
GGGAGCTTATGGAGCTTTCAGCCAATGTAACAAGCCTTGTGGAGGTGGAA
GCCAATCACGATCGAGATCTTGCAACAACCCTGCACCAAAGTATGGAGGA
AAAGCTTGTGTTGGATCAGCCACTGACAGCCGAGCCTGTAACACACAAAA
CTGCCCAGTTGATGGTAAATGGGGAGCTTATGGAGCTTTCAGCCAATGTA
ACAAGCCTTGTGGAGGTGGAAGCCAATCACGATCCAGATCTTGCAACAAC
CCTGCACCAAAATACGGAGGAAAAGCTTGTGTTGGATCAGCAACTGACAG
CCGAGCCTGTAACACACAAAATTGTCCAATCAACGGAAAATGGGGATCAT
GGAGCGGATATGGATCTTGTAACAGAAAATGTGGAACAGGAAGTCAAAAA
CGAACCAGATCTTGTAACAATCCTTCACCAAAATACAATGGTGCTTCATG
TTCAGGTTCATCTCAACAAAGCAGAAACTGCAACACTCACTCTTGTTATT
CTGGATATATGGAATTCAAAACATGCGAAGGATCGTCACGTAATGTCGAT
TGTGGATCtggaaaaatcatcaaattgcACGACTACTTCTGGGGACGAAC
TTCCAAGTCATACTGCCGAAGTGGTATTGATTGGTTCTGGAGCACAAGCT
GCCGAGGTGGTCATGGACGTATTGCCAACAGATGTCACAACAGACAATCA
TGCAAATTGGAAGCTAACAATAGCTGGATGAACGATGACCCATGTTTTGG
AACACCAAAATACGCCTGGGTCAAATACCGGTGTTACCAAAGTCCTTATT
AAGTGATATTTTCATAACATATACAAA
Run BLAST on NCBI

transcript from alignment at scaffold_442:66751..79923-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065681 ID=TCONS_00065681|Name=TCONS_00065681|organism=Clytia hemisphaerica|type=transcript|length=13173bp|location=Sequence derived from alignment at scaffold_442:66751..79923- (Clytia hemisphaerica)
GGTAAATGGACAGAGTACAGTGAGTTCAGTGAATGTTCAGCCTCGTGTGG
AGGTGGATCACAAAAAAGAACACGATCTTGCACAAACCCTGCACCAGCAC
ATGGTGGAAAAGAATGCGAAGGATCTGATGAAGATGAACAAGAATGTGGA
ACTGATCCTTGTCCAGGTATGTTGCTTGCGATGAGATATCTCACCCTAAT
CAAGAGCCCTCTAATAACGTTTGTCTTATACTCCGACAAGCTTAAAGTAA
TTGTACTCTTTTTCTTACTGGGGCAGGTGGGTATTGCAAATTCTTAATAA
GCATGGACTGCATCACCTCCACAATCCTCACTACATATGCTGCAAGCTCC
GTTACTCCACAATATGCATAATTTTGCCTTCTGGGTTTACTTTATATGCT
GGGGGTAAATTAAATAAAACTTCTAGATCTACATAATGTAGCTTCAGTAC
AAGACACTCGAGTCCTCGTCAAGTATGCTGAAAATCATAAAATAGCAAAA
TAAAATGCTCCTTAAGTTTTGAATTTTTTTCTAAAAATCTAGTTGATGGT
AAATGGGGAGCTTATGGAGCTTACAGCAAATGTAGTAAAGATTGCGGAGG
TGGGAGCCAATCCCGATCGAGATCTTGCAACAACCCTGCACCAAAGTATG
GAGGAAAAGCTTGTGTTGGATCAGCCACTGACAGCCGAGCCTGTAACACA
CAAAACTGTCCTAGTAAGTTTAGCTGCTAGTCCAATTCGAAAAACAAGAA
GACTTTACCATGTGTGTATTACGATGAGATTCAAAGAAGTGAAATATTTT
CCTATCAATTTTCAATTTTCCTTGTAGACTGAAAAACTTCTCTAGGAATG
ACACTATCAGGGGTGACAAGACAGCCGTTATTATTCTTTAATAACTATGG
TTCCTTCCATTCTTTGAAATAAATTAACCTAAAAATCATTCTAACTGGGA
CAATGTGTAATAGTTTTGAAGCAGAAAGAGTCCTCTATTTACCGATATTT
AGCTTGCACCTACTTTTAAGCACTTTTTCCGTTCTTTTAGTCAATGGAAA
ATGGGGATCATGGAGCGGATATGGATCTTGTAACAGAAAATGTGGAACAG
GAAGTCAAAAACGAACCAGATCTTGTAATAATCCTTCACCAAAATACAAT
GGTGCTTCATGTTCAGGTTCATCTCAACAAAGCAGAAACTGCAACACTCA
CTCTTGTAAGTTGCACTTTTATCATCTTAGATTACCTTTTAAACTTACTT
CGCCAGCAATTCCACAAACCCCATTTAGCTTGAAGCTTTATTTCTTAGAT
TCGTAATTTATGAGCTTAGTTTTTCTTTACCTGATTACTGATCTCTCCAC
AAGTGCACAACGTAAAAATTGAAAAGGAAATGGTTGAAGCATTCCTTCCA
ATTATTTATATGCCTTTACTAGAGCGAGCACCTCATTTTTTACAAATTTC
GATCTGAAGATAAACTCTCTTTTCCACCAAAGGTTGGTCTGGTTACCATG
AATTCAGAACATGCGAAGGATCATCACGTAATGTCGATTGTGGATCTGGA
AAAGTCATCAAATTGCACGACTACTTCTGGGGACGAACCACAAAATCAGT
ATGTAAAGGTGGTATTGATTGGACCTGGAGCACCAGCTGTCGAGGTGGTC
ATGGAAGAATCAGAAATAACTGTGATAACAGACGATCATGCAAATTGGAA
GCTAACAATAGCTGGATGAACGATGATCCATGTTGGGGAACACCAAAATA
CGCCTGGGTCAAATACCGATGTTACCAAAGTCCTTATTAAGTGATATTTT
CAAAGCAAATTAATATACAGCACTGTAGGCTATATTCCGCACAGAACATT
CAACTCAATTGCACCTTACATTTCTATTTATACTGAAAGAAAGAAAGAAA
TTTAAATGAAACACCAGTGAATTGTATTTTGTGTTTACTACAGTAGTTCG
GTAGTTTCTGAAGACACTCCTGTCTCAGTGACCCGGTGGAAGCTAAGGAA
AAAGTAAGATTTAACGGACTGATAAAAGGGGTGCCTGATTCCTACAAATT
GGTCTTACAATGAGCCTCATTTCTGACCTTTGATTTGGTTTGATGCCCAT
TTTTCTTATCCCAACATGTTATACTCCCTTTTCGATCTTCACGTACCTTT
TTACGAGTCATGANTGATTTGGTTTGATGCCCATTTTTCTTATCCCAACA
TGTTATACTCCTTTTTCGATCTTCACATACCTTTTTACGAGTCATGGGGA
GAAATAAAATACAATAAATGCCTGCCGTTTCTTCTGTTCTTATAAATAAC
TCCACAAAATCAAGCAAAATCCAATACTCTCCAGGTGCCTAATAAACGTG
GGGGTTGGAAATTTTTCAGAATTTTAATAAACGTTGGGGTCTTAATAAGC
GTGGGGGTTGGAAATTTGATAATTTGTCGAAAATACCCCTAATTATTGGA
AGCTAGAAGATGCACATATTTTGAGTGTAACACAACAATAAGTCATATTT
TGTCACACCTACAAGTATAATTATATTTGTTGAAATTGCTTAACTTGTTA
ATTTTTCAGCTGTTAGGTCAACGTTATTGGAAGCCTGCAGAAAATACTTA
CTCTCTATTTCAAAAATAAGACGTGTCCAATGAAAAATGCTTGATAAGAA
ATTTCTGAATTTTAGTAAACGGGGGGGTCCTAATAAGGTCAGTAGGGGTT
GGAAAATTTTCGAAAAATTAATAAGCGTGAAGGCACGTTTATTAGGCACC
TGAGAGTAGCTTGTTTTTTCATGATGTTGAAGATAAAGTGCAAAATCTAA
ACAGAAAAGCACAAATTAAAACTAGAGCCAGTCTTCCGGGATGAGATTAG
AGATAAATATGACCGAGACAGGTACGACGAAAGCTTTTTAAATCTGGTAC
CGCGAGTGAGGAAATTTAAGGGATTTTACCGACAAAGAGGAAAATTTCGG
GATTTTTTGTGAAAACCTGGTACGGCCGTCGCCGTACCTACCGTACCCGG
TGCGTCGTACCTGAATATACCATTTTCGATAACAAAAACCTAGTGTGGTA
AAGTCCTCTTTCGTTGAAAACAAATTAGAATAGAGAACTAGAGCGTCTCA
CTGTAATAGTGATTTAAAGAAAGCCTTGTTTGCAATTCAAATATCTGAAT
TTAAAAATTTAAAACTCATAAAATTGGTCTGCAGGCAAAGAATTGGCACT
GTTGGAAATCTCTTGACTTCACCATTTTTGTTTGAAAGAAAATGGTTTTA
AGCTATGGCTTTTCAATATTGTTTTCTCACTTCACCCTCTGTAATGAGAT
CCAATCCCAATCCAATTCTCTTCGACGTACCGCAATGGATGATTATACAC
TGTGATGTCAGCTCGCCATTTATTATATTATCATTCTATTCCCCCGAATT
CTATAGCCTTTTCATAAACGAGTGCAGCCTCGTGTTGAAACCATCACCAA
GGTGATAAAATACCTTGAGTTTTCAACTTTATAAATAGAGTAAACGTCTT
ATGAACCCTTCTAACCGATCAATCCCCATAGCAATATTTTGAAAACGAGG
TAAGCGTTGTTCGTGACACGTATTTTATGAAAATGTCGACAGTATTGGCC
CCAAAAACGTATAGGTTGTTATTAAAATGAGGATTGGGCTCTTCCAGAAA
ATGTCCGTACATGGGGGGGGGGTGAGAATATAATGTCCGGGGGTAGTGAA
ATGTTACACCTGCTGTCCTGGGTCAAAAGTCACAATGTCCGGGAGAAAAT
TTCCAAAAAATGTTATATCCCCCCCATATTAAATTTTTTTCTGGAAGAGC
CCATTCTGAACTTTAAATTAGCCAGAATTAGACGATTTTTGTTTATTTCG
AAAGAATGATGGTTATTCTTGAGGGTGAGTATGTTTTTGATGATTTCAGA
AAGATTTACGCCTAATGCCTTTCAGAAAACGCAGATGCATTTGCGACTTT
AGAGGATGAGTAAAAGATATAGCATCTTAAAGGTCAACCAGAACCAGCAT
TGATAAAACCAAAAATTCTAAATATGAGTAACAGAAAAAATCTTGGAATT
CTGTTCCTGCTAACTTGACTTAATAGTTTATAACAAAAAATTATATATAT
AAATATTTGCTGAATCAGCAAAAACGACATATTCTGTCATATTTTTTGCA
AAATATAGGAGAAACATAACTTTAAATCTTAATATTTTTTTTGTTTCCGT
TAGGGTGTATTTCCAAAATTTCCGCAACATATTCCATATATGAATGGAAC
CATTTTCGAAAGAAATTGGTTTTCAGAAACTTAATTAAAACGTCGTTAAT
TCAAAATTATTGTTTTCAAAATTTCTATCGAAAATCTTGCAATATTTTAT
ACAAAACATAAATTTTACATCCATCGGGTCATAAATTTATGGGAAAACAA
AAATATGTTATTACCACTGGGCTTCTTAATTTAATTTTAAATTTTCAAAC
CTACGTTATTGGGGCCCCAAACCTGCGTTCTCACAACCAGGGGTATACTG
TAAAAGTTTCTTTAAACAACTTTATCCCCAAAACCCTCTCAATCACATTT
GCAAACTATGGTAAAAATTTTATATTCGTAGTTTAAAGGCCTGTTTTTAA
GCAAACGAAAAATATTGTTGAAGTTGAAGATTTTGAAAAAGAACTTTCGA
GAAATAAAATTAAGATGTTAAAGTTTTTCATGCAGCAAAAATTTTTGTAA
AACATCTTTTCCTCTAGATTCGAAAAAAACTTTAAATCTGACTGACGTTT
TGGTGGCTACATACTGTAAAGTTTGATTCTTTAAAGGATTGGATGGATAA
ATTGGATCCTTAAATTGGATCATACGCGATAACTTTACTGTAGAGTGTTT
GTCATAGGTTAAAATTCAGAGAAAGCAAAAATGAGGTCCTCTTGTAATTT
TCACTACTGGCTAAATTTCAAACTTGCAACCTGGAAAAGAAGATGTTGCT
GTAGAGAGTGGTTTCGACCTATAGCCAGCTGGAGGACCGGTAAAATGGTT
TTTCTTAAGTCGGCGTGGTAAAAGATTAATCTTATTCGAAAAGGGATTGA
TTTAACATCTCATTGTTTAGTTGCATGGTTAGATTTTATTTTTAGTAAGT
AAAACAATCATTAGGATTCGAATTATCGCAAACTCCACTTCCCTTTGTTT
TTTTTTATCATCTCAATTTTCTAATGAAAGCGGCATACAATTTCGGGGAA
AATTGTTCTAAACCGAAACCTAACTCAAACACAATCCACTTATAATTTCC
TAATGCAAGATTGCAATAGAAATCACAAATTAACACTATATTGTTTGTCA
TAACACAACAAAACTGAAAATAAAACAACTTTGATCTTGAACGCTAAAAC
GAACGGAATTGGATTTGCAGAATCTCCAAAAAAGCTAATTCTCAAGTCCT
TGGATTATTGATTCTTGGTGCTAATGGAAAGGATCTTTAGTTTACAGTTG
AAACACTTTGTCACTTAGAAATAATTGTTTTGAAATCGGATATTACATTT
ATCGGCTTTGTGATCGGGAAGCATTTTTTTAAGGGAATCTGTTGTTTATC
ATGTTACCAATGATTGAAACAGGTGGACTTGTGAATTACTATATATCATG
AATTCGGTTAAAATTGATTATTGCTTTTTGAAACATTAAGAAGAAGCAAA
CACAGTGGTTTTAAAAAAGGTATGAAGATATTTTTTTGAGTTCTTTCTGA
ATTTGGACGTTTCACTGGGTATAGGTATAGGTATGAGAAGAAAAAAAGAT
TTATCTTGGTCTATGGTAACAAAACTATTGAAATTAAGTTAATTTTTGAG
CGCCGTAAATCATTGAAAGGTTACAGATTCTCACCGTGAAATTTACCCCA
AGTGAATTTTCTTAATTTTTTCACTCCTTCAGTACTAGTGGAGACAGAAA
TTTGAATATTTTTTCAAGGCAAAGAATTTTAGCTTGGATGGCAGTACTGA
AAAAGTTAAACATTTATTTTATTTTTCCAATACAGATCCACTGACAATGA
AAGTTTTCGTTTTGTTGGCCCTTCTTGGGGTTGCCTTGGCACAAGATGGT
AAGTTACGTGTTAGAATTCCTTGTGTTTTTATGACAATGTCTTGTCAATC
AGAGGTGAAAGGTAAATATTAAAAAACAAGCTCTCCTCTGCTGCACTATA
TTACTATAGTTAGAGTTTAAGAAAATTTATATCTTGCCATGTAAATTAGT
ATAAAAAAGAACTAAACTAAATTATCGGGGCCGGCAAACGTAACTTTTAT
TAATATTAGAATTGCAGCGGTTTGTCAAAAATAGGGGCATAATCGGGGGC
AAATTTCTCAAAATTGGCGCAAGATATATATGTGTAAAAATTTTGGTAGG
AAAGTAACAAAAAATTGTGAATATATGATCTTCGGTGCCTCCCAAAAAGT
TCGGCCGCTGGGGCGGTCAGTAAGATTCATCATAAACCGAAAAGATTATT
TGAATCACTCAATTTTTTAGGATTTGCGATTTGCTTATAAGTTACATTTC
TTATTAAGGGCTCTGACCATAGTGAATTTTTCATAATTGCCGTGTTTGAT
ATGTGTTTTCTGACTGATGTAACCAACAAAACTGTGGTATGTTATACATT
TTCTGTTAGACAAACTATTCCTGAATCTGAAAATTCAAAAATTGCATTGA
AAAAATTTGATGAAGAAGAAAATGAAGACTTTTGCGAGGATGAGTATTTC
AACTTTGAAGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGAATTTTTTT
TTGCAGTAGTTGGTGTATCTTTTACCAAACAACAAAAATTTTTGCGGAAA
ATTTTTATAAATGCTTCTTTGTCTCGAAATCTTCAAAATAGTGGTTTTTC
ATCAATTTTTCATCTGGATTTTGCTTAAAAAACAGTCATAACTTTTAACA
CATCTTTTTAGAAATATTTTCCGCAAAATTTAAAATTGTTCAATTCTTTG
CGGACAGTGTAAAGAAACTTTGAAACAAAAAAGTTAATTACCCATTAAAA
CTAAGCACTTTTTGTAAAAGACGGTGATGCAACATATTATTANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTCTTTATTACTCTTAAGGGATTCGATTAAAAA
GCAATTTATAAAGGCAATTCTTTGTTAAAAGTGTTAAGAAACCTGAAATA
TAACTTTTATGTTCAAATACGAAAATCAATTTTTTGACTACGGTCAGAGC
CCTTAAGGATCCGATTAGTATGAAGAATGTTGAAGTTAAAAAAACTGGGT
TGGAAGGCCTACACTGGTACTGAAATTTAGGTATTAGAATAATTCATTAT
CTTTGGGTATTTTTCACTAGATTGCCCAGCGTTCGTTAAGCAAGGATGTT
TGAGCAGAGATGCAAATGTCTTTCATCAACAAGTTGCAAACAATCGTGAT
GCTAGCAGCAATGTTTACACCGGCAAACTTTTGGACTGGCATAACTTCAA
ACAATCCCTTGGCGAGTGAGTGCGATTTTCCGTTCTTGGACCAAAAAAAG
ATGCTGACTTTTGTCAACAAGTGCAAGTCTTGTATTGCATCTTTTTTATT
ACATAACGTTTTTAATCACCTAAATAGACATCTGGGGTGATATATAAATT
TCTGAATATTAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTAGGATGTGCTTGT
GCCAAGAAAGTCAAAGAACTCGGTGGTGTTGCTTTTGCCATGACATTCTG
GGGAGAATGTTGGATGGCCACCGACAAAGCAGCTTATGAAGCTCATCTTA
TGAATCCTGCTGATCAATCAGGAAGTTGTATCGGTCATGACGGAAGCAAC
TATGGGTCATGCGCTGAAGGACATGGACATTGCATGGCTGACGAATCTTC
CGAATACGCTTACAGCTTTCCATCTGCTGCCCCACCAGGTAAGACAATGT
CCTCCCTTTATACACTGTCTTTTCATTAGAACTTAGTTTATTAGAACAGT
TAGGCTAAAATTAAGGGAAAAAAGGAAATCGTAAACATGGCCAGTCTGAA
GATTTATGTTTCCCGTGCATGCTCGAGTTATGGAGACTCCACTGTATAAC
TACTTTAGATCCGTAACGAAAAATTTCGCTAATACGAAGTTTTAAAGAAA
TACACTGTAATTGCTATATGAGCCTCTTTCTACTTTTCAGCAATCGATGG
AGGATTTGGAAACTGGAGTGAATGGACACAATGTTCAGCAAGCTGTGGCG
ATTCTTTCCAAGAACGTGAACGAAGTTGCAACAACCCCGTCCCTAAAAAT
GGCGGTGCTGACTGTCCAGAGGAAGAATTGACCGAAACAAGAAAGTGCGA
CGTCCCAGCATGCCCAGGTATACTCTTCTTTCCTCTTGATGTAAATTATT
CACATGAGAGGTTATTTCTTTGCTTTTATCCGCTCAACATATCAATCTTG
ATAAAACAAAGTATGTTTTTGAACTCTTTCAGATTTTGGTAAGATCACTT
TCACAAGGATTTGTACTGAAAGACCAATTTGCTCATGCAAACACAGTTTT
CATTTAAACAATAGCAAGCTAAATCATTGCTAATTTTAATGTTCCAAACT
AAGCTTTATTTTAAAGCACATCTAGACGGCTATTTTAGATTTGGGCTCCA
ACAATAAGATAAAGAAGCCTAAAACTAAAATCATTATCAATTTTTATAAT
TTGTTAAATTGTCTAGTCGACGGTAAATGGACAGAGTACAGTGAGTTCAG
TGAATGTTCAGCCTCGTGTGGAGGTGGATCACAAAAAAGAACACGATCTT
GCACAAACCCTGCACCAGCACATGGTGGTAAAGAATGCGAAGGATCTGAT
GAAGATGAACAAGAATGTGGAACTGATCCTTGCCCAGGTGCGTGGCAATT
AAATACTCGATCACAATACAATTGATATTGCTTCAGAATCTTCACCGACA
GCTCGGTCTTAGATCATGTTCGCACGTGGCGGTTCCGTTTCGCTCCGAAA
CGAAATGAAGCCATTCTATTGGTTACATTCAAGTGTTACGTCACTTCTAA
CCAATAGAATGGCTTCATTTCGTTTCGGAACGAAACGGGACCGCCACGTA
CGAACATGGTCTTAGGGATCTTTTTCTCAGAACTTCATCTCGGTATAAAT
ATTTTGTGGTGTCTACACTCTAATGCATTATATCCTAAGGTTTTCTGAAA
ATTTTGAAGGAGATATCATTTTGTGGATAACTATTTACGTTAAGAAGAAT
TTACAGAAGTTTCTGATTTCGTTTATATATGTAAAGTATTCCAAATACAT
TCTCTTGAACCATTGGTTTACACGTTTCCAAAAAACTTTCAGAAAAATCA
GTCATTCTAATCAACCGAACTTGCATTTTCTCTAGTCGACGGCAAATGGA
CAGAGTACAGCGAGTTCGGTGAATGTTCAGCCTCGTGTGGAGGTGGATCA
CAAAAAAGAACACGATCTTGCANGGTAAATGGACAGAGTACAGTGAGTTC
GGTGAATGTTCAGCCTCGTGTGGAGGTGGATCACAAAAAAGAACACGATC
TTGCACAAACCCTGCACCAGCACATGGTGGAAAAGAATGCGAAGGATCTG
ATGAAGATGAACAAGAATGTGGAACTGATCCTTGCCCAGGTGCGCCTAGT
CTACATTCCATGTCAAGTTGTTTTAAATGATGACCATTCCTGGACACTGA
AATAATTCGTTGTCTTTATAGTCTTAGGTTTAACCTATTCCGAGAGATGG
CTCGATAGGGCCAAGCTACAAATAATATGTCACTAACATATACAAAAAAA
GATATTTGCAGACAGTGTGGTCTTTCAGAAAAGATTCGCAGCAGATTGTG
AAAGAGCAAGGGAAGAATGGGAAATTTTAAGTGTTTTAAAATTTCTTATT
TTTCTTCTAAAGTTGATGGTAAATGGGGAGCTTATGGAGCTTTCAGCCAA
TGTAACAAGCCTTGTGGAGGTGGAAGCCAATCACGATCGAGATCTTGCAA
CAACCCTGCACCAAAGTATGGAGGAAAAGCTTGTGTTGGATCAGCCACTG
ACAGCCGAGCCTGTAACACACAAAACTGCCCAGGTGTCATATTTTGCTTT
TATAATCTCTTATCTCTTTCAACAATATTTTCATTTGCTTTTCGAATTTT
CAGATTGATTATGAGTTTCTATCATGAGTAGTTTTTCCAGACACGATAGA
TGCACAGCTTACAAAAGCAGTAGTTATTACAAAGGCTTTAAAATACCAGT
TTTTAAATTCTTGATTGCAGTTTATACTTTACCGTGCAAACTAAAAATAT
ACACAAAAGAGGAACGGTCTCTTGTATTATCTCGAAGAGACTTATATTGC
TGATGAAAAAATTTCTTACTTTCCTTTTATAGTCGATGGTAAATGGGGAG
CTTATGGCGCTTTCAGCCAATGTAACAAGCCTTGTGGAGGTGGAAGCCAA
TCACGATCGAGATCTTGCAATAACCCCGCACCAAAATACGGAGGAAAAGC
TTGTGTTGGATCAGCCACTGACAGCCGAGCTTGTAACACTCAAAACTGCC
CAGGTGCCATATTTTGCTTTTATAATCTCATGGGATATTATTTCCAACAA
TATTTTCCTTTTTTTTTGCTTTTCGAATTTTCAGATTGATTTTGAGTTTC
TACCATGAGTAGTTTTTCCAGACACGATATCAAGTTTCAGCTTACATAAG
CAGTGGTCAAAGATATTTCACCAAGGCTTAACATCCAAGTTTTTAAATTC
TTCATTGCAGTTTATACTTGATCGTGCGAGCCAAAAATATATAAGTACAA
GATAGGAAGAAGGCCCCCCAGCGGTTTGCGTGATGGCGTGATTGGGACTT
TTTTCTTGCGTGATGGCGTGATTAGAGATTTATTTTGGCGTGATGGCGTG
GTCAAGATTTTGGCGTGATGCGTGATAGGGCAAACATTTGAGACGTGATG
CGTGATTTGGGCTATTTTTCACTATTTTTTGCGTGATGACAAATTTTAGC
GATTTTCGTGATGCGTGATGGAGAATTTTTTTGCGTGATGGCGTGATTAG
GGGTGCCGCTGGGGGGCCTCAGGAAGGGTCTGTTGTATAATCTTGAAAGG
ACTTATATTGCTAATGGAAAAATTTCTTATTTTCCTTCTAAAGTTGATGG
TAAATGGGGAGCTTATGGAGCTTTCAGCCAATGTAACAAGCCTTGTGGAG
GTGGAAGCCAATCACGATCCAGATCTTGCAACAACCCTGCACCAAAATAC
GGAGGAAAAGCTTGTGTTGGATCAGCAACTGACAGCCGAGCCTGTAACAC
ACAAAATTGTCCAAGTAAGTTTAGATTAACCATCAAAAGGAACTTAGCCG
TTTTTCTTTAACAGATATGCTTTGTAAGAACTTGATCGCGACTTACGGTG
TTAAGCAATGAATTAAGTTCAAACTGGTTTCTTTGGTTCTTAAAAACAAA
TTAACCTAGAGATTATGCTAACTGGGACAATGCGTAATAGTTTTAAACCA
GTATGAGAGAGATGGCTAAAATGTTAAAGGTTTATCTAGGAATAGGGTAC
ATTTGCATAAAAATTATCCAAAGCTCAATAATCTTTTGAATATTTACCGA
TATTTAGATTGTACCTACTTTTAAGCACTTTTCCCGTTCTTTTAGTCAAC
GGAAAATGGGGATCATGGAGCGGATATGGATCTTGTAACAGAAAATGTGG
AACAGGAAGTCAAAAACGAACCAGATCTTGTAACAATCCTTCACCAAAAT
ACAATGGTGCTTCATGTTCAGGTTCATCTCAACAAAGCAGAAACTGCAAC
ACTCACTCTTGTAAGTTACACTTTTTATCATTTTAGATTACCTTTTAAAC
TTACTTCGCCAGCAATTCCACAAACCCCTCCTATCTCTTTGGCTTGGAGG
TTTCTTCCTTAGATTGTAATTTATCCATAGTATAGTTTCCAAGAGAAAGG
ATCCTTTTGATCAACTTACCAGATAAACTAGCAGCAAAGAACTAAAAAAA
GTTTAAAGATACAAATATGAAGGCCATTTCACGGTCGAAATGACACATGG
GTGATCAAGACCGATTACGGCTCTGTAACGGCCCACTGTTGGTTAGATAC
AAAAATATCCAACATTAGACCGTAGTTATAGAGTGCAGCGATCCTGATTG
CCCATGATTCCTTGCAACTATCAAATGACCTACAAAAGTCACTGACATGC
TGCAGACATGCCAAATCAAGGACTCTTTGATGTTAACAAAGTTTTCAAAG
GGAGGATAACGAGGATAATGAATTCACGGGTTCCGGGGGAGATGGTTCTT
TCGGATCCTAGTGATTTTGATACATCAGAGTGAGCCTAAAATCCGACACT
TTCTTTCTCAGTCGGTAGATCAGTTGCGCAGTATGTAATTCGAAAGTCGT
AAGTTTGAATTGCACTTCAGTTCAGCAGTTTGCTTTCAAACTGAGGTCAA
TTCGCATATATACGTGTTGGCACTAAATGGTCTTGATGCAGTGTAGCAAG
TGAATATGGAGAATTTGAAATTCAATTTTTCCTATTTCAGGTTATTCTGG
ATATATGGAATTCAAAACATGCGAAGGATCGTCACGTAATGTCGATTGTG
GATCTGGAAAAATCATCAAATTGCACGACTACTTCTGGGGACGAACTTCC
AAGTCATACTGCCGAAGTGGTATTGATTGGTTCTGGAGCACAAGCTGCCG
AGGTGGTCATGGACGTATTGCCAACAGATGTCACAACAGACAATCATGCA
AATTGGAAGCTAACAATAGCTGGATGAACGATGACCCATGTTTTGGAACA
CCAAAATACGCCTGGGTCAAATACCGGTGTTACCAAAGTCCTTATTAAGT
GATATTTTCATAACATATACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041151XLOC_041151Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065681-exon-scaffold_442-1575043694:79758..79923TCONS_00065681-exon-scaffold_442-1575043694:79758..79923Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1575043694:70758..70907TCONS_00065681-exon-scaffold_442-1575043694:70758..70907Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1575043694:69985..70005TCONS_00065681-exon-scaffold_442-1575043694:69985..70005Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1575043694:69541..69711TCONS_00065681-exon-scaffold_442-1575043694:69541..69711Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1575043694:68310..68480TCONS_00065681-exon-scaffold_442-1575043694:68310..68480Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1575043694:67814..67978TCONS_00065681-exon-scaffold_442-1575043694:67814..67978Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1575043694:66751..67083TCONS_00065681-exon-scaffold_442-1575043694:66751..67083Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1510915933:79758..79923TCONS_00065681-exon-scaffold_442-1510915933:79758..79923Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1510915933:70758..70907TCONS_00065681-exon-scaffold_442-1510915933:70758..70907Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1510915933:69985..70005TCONS_00065681-exon-scaffold_442-1510915933:69985..70005Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1510915933:69541..69711TCONS_00065681-exon-scaffold_442-1510915933:69541..69711Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1510915933:68310..68480TCONS_00065681-exon-scaffold_442-1510915933:68310..68480Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1510915933:67814..67978TCONS_00065681-exon-scaffold_442-1510915933:67814..67978Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1510915933:66751..67083TCONS_00065681-exon-scaffold_442-1510915933:66751..67083Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1491911889:79758..79923TCONS_00065681-exon-scaffold_442-1491911889:79758..79923Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1491911889:70758..70907TCONS_00065681-exon-scaffold_442-1491911889:70758..70907Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1491911889:69985..70005TCONS_00065681-exon-scaffold_442-1491911889:69985..70005Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1491911889:69541..69711TCONS_00065681-exon-scaffold_442-1491911889:69541..69711Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1491911889:68310..68480TCONS_00065681-exon-scaffold_442-1491911889:68310..68480Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1491911889:67814..67978TCONS_00065681-exon-scaffold_442-1491911889:67814..67978Clytia hemisphaericaexon
TCONS_00065681-exon-scaffold_442-1491911889:66751..67083TCONS_00065681-exon-scaffold_442-1491911889:66751..67083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_442supercontigscaffold_442:66751..79923 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.122328	0.290483	0.00645326	0.0494253	0	0	0	0	0	0	0	0	0	2.32795	4.38952	0	0	0	0	0	0	0	0	0	0	0.150766	0.214535	0.0813585	0.0414457
Blast
[Close]
BLAST of TCONS_00065681 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 3.021e-71
Identity = 130/282 (46.10%), Postives = 184/282 (65.25%), Query Frame = 1 
Query:    1 GKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPINGKWGSWSGYGSCNRKCGTGSQKRTRSCNNPSPKYNGASCSGSSQQSRNCNTHSC 846
            G ++++S +  CS +CG G QKR+R C  P PA+GGK C+GSD + + C   PCPVDG W+E+S + EC+ SCG G+Q RTR+C NP+  HGG+ CEG+  +   C   PCPV G W A+  +  C++ CG G+Q+R+R CNNP P +GG  C G+ T  + CN +NCP+ GKW  + ++S C+  CGGG++ R+R C++P P+YGG+ C GS   S  CN+  CP +G W  WSG+G+C+R C  G  +R R+C+NP P   G +C G   Q + CNT  C
Sbjct: 4530 GGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811

HSP 2 Score: 221.09 bits (562), Expect = 1.795e-62
Identity = 121/285 (42.46%), Postives = 169/285 (59.30%), Query Frame = 1 
Query:    1 GKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPINGKWGSWSGYGSCNRKCGTGSQKRTRSCNNPSPKYNGASCSGSSQQSRNCNTHSCYSG 855
            G W+E+S + EC+ SCG G+Q RTR+C NP+  HGG+ CEG+  +   C   PCPV G W+ +  +  CS SCG G+Q R R C NP PA GG  C+G++   Q C    CP+ GKW  + ++S C+  CGGG++ R+R C++P P+YGG+ C GS   S  CN+  CP  G W  +  +  C++ C GG   R R+C+NP P  GG+AC G  +  + CNT  CP++G WGSW  +  C+  CG G + R R C++P P   G  C G + Q   CN  +C  G
Sbjct: 4587 GSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPGG 4871

HSP 3 Score: 193.356 bits (490), Expect = 5.329e-53
Identity = 102/227 (44.93%), Postives = 152/227 (66.96%), Query Frame = 1 
Query:  166 VDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPINGKWGSWSGYGSCNRKCGTGSQKRTRSCNNPSPKYNGASCSGSSQQSRNCNTHSC 846
            V G ++++S +  CS +CG G QKR+R C  P PA+GGK C+GSD + + C   PCPVDG W  +  + +C + CG G+Q+R+R+CNNP+ ++GG+ C G+A +   CN + CPV G W A+  +  C++ CG G+Q+R+R CNNP P +GG  C G+ T  + CN +NCPI+GKW +W+ + +C+  CG G+++RTR C++P P+Y G  C GS  QS  CN+  C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754
The following BLAST results are available for this feature:
BLAST of TCONS_00065681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN13.021e-7146.10Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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