TCONS_00065675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065675
Unique NameTCONS_00065675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1857

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065675 ID=TCONS_00065675|Name=TCONS_00065675|organism=Clytia hemisphaerica|type=transcript|length=1857bp
CTTTTTAAATCTGTGACGTAGCTtttgttatttcaaaaaatgagattttt
taaacaaaatttgttaAACAAGATTTTCGATCAAAAGAGAGTTTTCacca
tatttttttaaaaacgttGGAATCGAAAAATATACCCAGTACGAGAAAGG
GAAAATGTCTGACGAATCAAGTGATACTGATGATACTTTATCAACCAACA
CATCGGATGAAGAATCTGAGGGGGAGTCGGACTTGTCGGACGATGGGATT
GGTGGATTTTATGGTGACGAGCCTGAATATTCCaaagaagaatttaaaaa
aatattgtccGAAGCTAAACAGAAACAAGAAAGTTCAAGTTCTTCGAGTG
ATAGGAGCGATGATGATCTAGACTCAAGTAGATTGGAAAATTTGCACTGG
TGCAAGTGTCGAAAGTGTGTGATAGGAATGGACTTCGCATTAGAAGAGTG
CTTGTGCTGTCAAGAGTGTGGTATATTAGCTGAAAAACTACAAGGGATAA
AATGTATCACTGAACATAAAGGCTTCAATGATTATATCTTGAGCCCTTAC
GCTCTCGAAATAACCTTAATTGTAAAGAGGAGACAGaagaagattttcaa
aaagctgAAGAAGATTACAAATAGGCAATACCGCTACGCTGCATACCACC
AATATTCGTACTGGACCCACTACTACGAGATTCTTGGCAGGCACAAAAGA
GTGGTTATTCCATCTTGTGCTGTTAAGAAGATTAAAGACACCTTTCCAGA
ACCCATTGGTGGTCACTACACTGGTTTCAAAAGGGCCTTAGCTGACAATG
TCATTGACCATGAGTGATTTGATCTAACACATTTGTAAACAGAAATCAAT
TAATGagattaaaaatgaaatactaTATATATAACGATCACTTCCTAAAT
CTTTGCACTTTCAAATGTTTATCTATAATTGATTTAGTTTCTGGACGTTC
ATTCAAAGCGATGTTTTTGGGAGCAATTAGCCTATCGATCAGTTCAGAAG
CTTTCTGATTGAGCTTTTCGCCCTTCTCCTTCCTTCTCAAAAATTCTGAC
ATCAGCTTTTTCACGAACAAAAACGACTTTgtctcttttctttcttttgc
aaCCCATGCTTTGGATAATTTAGACGAAACGAACTTCCACTGCTTCTCTC
CTTTGTTGGCCGACCCTTTTATTTCTCTGGTTACGGTTGCTTGGTTTCGA
TTTGTGTTATGGTTGTAATCGATGACTGCTAATTTCACTCTTGCATCCAT
GACATTTAGCTCAAACTCGTGCTTTTTTGGAGCATAAGAATTGATGACAG
AATGAAATACCTCAATGTTCCCTGTATGGAGAGGGTTGACCAAATGCTCC
ATGTCATTGAGGGTCTTGGTGTCAAGGATCACTTTTTCCAAAGCATCGTA
AGCTACCGAATCCTTTTCAATCCACTTTTTCTTCAGAGCTTGTTTCTTCG
TTAGTGGCTTTTGACTACATTTGGGGTACTTGGGATAGGCTCTCTTAAAT
CGATGACGGTTTGATATGTGATGGAGAAGGGATTTCCACATCTGCCTGAT
TTTTTCCGCATCCCCTCCACAATTATCAGCACACCAAAATAGGTGGTTCC
CTATCTGCCGTATCCACTCTTGAATTATCTTGCAACCCTTCCTTTTTGCG
agttttctcaattttgatGTTATGTTTTTTGCGAAGTGCCAAGTGTCGTA
AATTCTTATTATTAGAGCTCGATTTTCCCTTAGCCACTTTGCAAGCTGCA
TATTTCTGTCGGTTGCTACTTTCACAACGTTGTAGCCCCCTCTTTCTAAC
TCATTAAGACAGTTTTTAAATCCCTCTAATTCTAATGGAGCTGATCCCTT
GCCTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_442:30757..33081-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065675 ID=TCONS_00065675|Name=TCONS_00065675|organism=Clytia hemisphaerica|type=transcript|length=2325bp|location=Sequence derived from alignment at scaffold_442:30757..33081- (Clytia hemisphaerica)
CTTTTTAAATCTGTGACGTAGCTTTTGTTATTTCAAAAAATGAGATTTTT
TAAACAAAATTTGTTAAACAAGATTTTCGATCAAAAGAGAGTTTTCACCA
TATTTTTTTAAAAACGTTGGAATCGAAAAATATACCCAGTACGAGAAAGG
GAAAATGTCTGACGAATCAAGTGATACTGATGATACTTTATCAACCAACA
CATCGGATGAAGAATCTGAGGGGGAGTCGGACTTGTCGGACGATGGGATT
GGTGGATTTTATGGTGACGAGCCTGAATATTCCAAAGAAGAATTTAAAAA
AATATTGTCCGAAGCTAAACAGAAACAAGAAAGTTCAAGTTCTTCGAGTG
ATAGGAGCGATGATGATCTAGACTCAAGTAGATTGGAAAATTTGCACTGG
TGCAAGTGTCGAAAGTGTGTGATAGGAATGGACTTCGCATTAGAAGAGTG
CTTGTGCTGTCAAGAGTGTGGTATATTAGCTGAAAAACTACAAGGGATAA
AATGTATCACTGAACATAAAGGCTTCAATGATTATATCTTGAGCCCTTAC
GCTCTCGAAATAACCTTAATTGTAAAGAGGAGACAGAAGAAGATTTTCAA
AAAGCTGAAGAAGATTACAAATAGGTTTGTACATTTCCTTGTAACATATA
AGGTTTCTAAAATGTAAAATACACCCATGTGTCACGGACCCGGTGGACCC
CCCGCCCCGGTGTAAAAATAGGCCAAAAAATCGTCCCCGGTGGAAAAAAT
ACCCTACAATTTCAACCCCACTGGTAAATTGTTCTATGATTTTATCCACA
ACTCCAATACCATCCCCACTGGAATTTTTGAGCTTAAAACAATACATTTT
CTATGCCCATTGGCATTTTGATAGGAATTTTCATCCCCATTGAGGGAAAA
GTTCCACCAGGGCACTGAGAGGGCCCTGAGACAGGGGTGTTAAAATTAAA
GTGTTGAAAAAAAGTTTAAAAACTCTAACATCCACTTTAGTTTATATACA
GTAAAATCAATGGAAAAAGCAGAAAAATATAGCATGTTACAACTCGCTTA
TATAAAATAATCAATGATGATTCTATTTCTATTTCAAATCAGGCAATACC
GCTACGCTGCATACCACCAATATTCGTACTGGACCCACTACTACGAGATT
CTTGGCAGGCACAAAAGAGTGGTTATTCCATCTTGTGCTGTTAAGAAGAT
TAAAGACACCTTTCCAGAACCCATTGGTGGTCACTACACTGGTTTCAAAA
GGGCCTTAGCTGACAATGTCATTGACCATGAGTGATTTGATCTAACACAT
TTGTAAACAGAAATCAATTAATGAGATTAAAAATGAAATACTATATATAT
AACGATCACTTCCTAAATCTTTGCACTTTCAAATGTTTATCTATAATTGA
TTTAGTTTCTGGACGTTCATTCAAAGCGATGTTTTTGGGAGCAATTAGCC
TATCGATCAGTTCAGAAGCTTTCTGATTGAGCTTTTCGCCCTTCTCCTTC
CTTCTCAAAAATTCTGACATCAGCTTTTTCACGAACAAAAACGACTTTGT
CTCTTTTCTTTCTTTTGCAACCCATGCTTTGGATAATTTAGACGAAACGA
ACTTCCACTGCTTCTCTCCTTTGTTGGCCGACCCTTTTATTTCTCTGGTT
ACGGTTGCTTGGTTTCGATTTGTGTTATGGTTGTAATCGATGACTGCTAA
TTTCACTCTTGCATCCATGACATTTAGCTCAAACTCGTGCTTTTTTGGAG
CATAAGAATTGATGACAGAATGAAATACCTCAATGTTCCCTGTATGGAGA
GGGTTGACCAAATGCTCCATGTCATTGAGGGTCTTGGTGTCAAGGATCAC
TTTTTCCAAAGCATCGTAAGCTACCGAATCCTTTTCAATCCACTTTTTCT
TCAGAGCTTGTTTCTTCGTTAGTGGCTTTTGACTACATTTGGGGTACTTG
GGATAGGCTCTCTTAAATCGATGACGGTTTGATATGTGATGGAGAAGGGA
TTTCCACATCTGCCTGATTTTTTCCGCATCCCCTCCACAATTATCAGCAC
ACCAAAATAGGTGGTTCCCTATCTGCCGTATCCACTCTTGAATTATCTTG
CAACCCTTCCTTTTTGCGAGTTTTCTCAATTTTGATGTTATGTTTTTTGC
GAAGTGCCAAGTGTCGTAAATTCTTATTATTAGAGCTCGATTTTCCCTTA
GCCACTTTGCAAGCTGCATATTTCTGTCGGTTGCTACTTTCACAACGTTG
TAGCCCCCTCTTTCTAACTCATTAAGACAGTTTTTAAATCCCTCTAATTC
TAATGGAGCTGATCCCTTGCCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041150XLOC_041150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065675-exon-scaffold_442-1575043694:32458..33081TCONS_00065675-exon-scaffold_442-1575043694:32458..33081Clytia hemisphaericaexon
TCONS_00065675-exon-scaffold_442-1575043694:30757..31989TCONS_00065675-exon-scaffold_442-1575043694:30757..31989Clytia hemisphaericaexon
TCONS_00065675-exon-scaffold_442-1510915933:32458..33081TCONS_00065675-exon-scaffold_442-1510915933:32458..33081Clytia hemisphaericaexon
TCONS_00065675-exon-scaffold_442-1510915933:30757..31989TCONS_00065675-exon-scaffold_442-1510915933:30757..31989Clytia hemisphaericaexon
TCONS_00065675-exon-scaffold_442-1491911889:32458..33081TCONS_00065675-exon-scaffold_442-1491911889:32458..33081Clytia hemisphaericaexon
TCONS_00065675-exon-scaffold_442-1491911889:30757..31989TCONS_00065675-exon-scaffold_442-1491911889:30757..31989Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_442supercontigscaffold_442:30757..33081 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.172222	0.146951	0.0731245	0.249435	0.20322	0.159972	0.138387	0.103645	0.253974	0.247176	0.327158	0.283269	0.266236	0.594752	0.207811	0.196776	0.145447	0.397543	1.14422	0.933931	0.166514	0.212386	0.172783	0.208645	0.134312	0.453819	0.177113	0.219679	0.222158	0.121722
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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