TCONS_00065663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065663
Unique NameTCONS_00065663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065663 ID=TCONS_00065663|Name=TCONS_00065663|organism=Clytia hemisphaerica|type=transcript|length=393bp
GCACAAAATACTTTATTTATCTCAGAATTTATGTTTCGGCATATCATAGT
TTCCCCTAGAATTAGCTTTGTGCGGCCGACAACATTCACGTCATTGCAAA
ATGGCACCGTAGAGTCCTCATATTCTCTCTTGAAcgctttaaaatgtttt
tgcagCATCTACTCACCTATTCTAAAGCAACATATAGTGAAAGAAGCTCA
AAATCTAccataaaaacattcaaaaacagCTGTCTTTTAGGGAAAGTACA
AGACCCCTTATGTGAGGAAAGATACTGAATAATACCTTATTCTGTCTATT
ATTGTTATCCAAATCCTTCTGAACTTCATCTGTTTGAATATCCAATAATA
AAACAccataataaaaagaaagtaaacaCTTAAGTTCACAGCT
Run BLAST on NCBI

transcript from alignment at scaffold_441:71079..71471

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065663 ID=TCONS_00065663|Name=TCONS_00065663|organism=Clytia hemisphaerica|type=transcript|length=393bp|location=Sequence derived from alignment at scaffold_441:71079..71471 (Clytia hemisphaerica)
AGCTGTGAACTTAAGtgtttactttctttttattatggTGTTTTATTATT
GGATATTCAAACAGATGAAGTTCAGAAGGATTTGGATAACAATAATAGAC
AGAATAAGGTATTATTCAGTATCTTTCCTCACATAAGGGGTCTTGTACTT
TCCCTAAAAGACAGctgtttttgaatgtttttatggTAGATTTTGAGCTT
CTTTCACTATATGTTGCTTTAGAATAGGTGAGTAGATGctgcaaaaacat
tttaaagcgTTCAAGAGAGAATATGAGGACTCTACGGTGCCATTTTGCAA
TGACGTGAATGTTGTCGGCCGCACAAAGCTAATTCTAGGGGAAACTATGA
TATGCCGAAACATAAATTCTGAGATAAATAAAGTATTTTGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041144XLOC_041144Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065663-exon-scaffold_441-1491911889:71079..71471TCONS_00065663-exon-scaffold_441-1491911889:71079..71471Clytia hemisphaericaexon
TCONS_00065663-exon-scaffold_441-1510915933:71079..71471TCONS_00065663-exon-scaffold_441-1510915933:71079..71471Clytia hemisphaericaexon
TCONS_00065663-exon-scaffold_441-1575043694:71079..71471TCONS_00065663-exon-scaffold_441-1575043694:71079..71471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_441supercontigscaffold_441:71079..71471 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.24125	1.44217	1.90312	1.46392	1.22041	0.962613	0.743678	0.696222	2.33871	1.45816	2.36558	1.25683	0.301665	0.810137	1.95644	2.32254	2.02642	2.016	0.53211	1.52329	2.09392	2.18234	0.884306	0.401981	0	0.923783	1.22107	0.692297	1.26071	1.48112
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top