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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065656 ID=TCONS_00065656|Name=TCONS_00065656|organism=Clytia hemisphaerica|type=transcript|length=3382bp CTGGAATGTCCACGACTTGGCTGTCTATCTATCCATGTTTTATGCTTTAT TTCCGATTCCGTATTGGGGATTATTCGTGAGCGCTGATTTTGGACGTCAT GATGAAAAATCAACAGAACAAACGGTCAGCATCTTAACCCTTATCTTCCG ACTATTACGACGTATTCTATACCCCTTAAAAGACTTTCTATCAGAGAGAA AACATTGGAATACCTTCCTTAACACCATCGCAATCCTACTGGCAATTTCT GGAGGATTTACAACCATGATGAGTACTCGCTATGAAAAACTCAACATCTC GTTCAAAGCTAAAGGATCGTTACAAAGAATCGGGGATGATTTTCAAGAGA TCCACGATAAGATCACTGATGTAGCAAATGGATTTATTATCGTTGCAGCT AATTTGAATCCGTGTCTGAATTATAACACAAAACCCCCTCATGACggtaa atcaatcaatcaaatacTTACAGATCACGTGACAAAAAAAGGGCGTGACG GGCATGACGCAACAATGCTTCAAGGTGGCACCTCCATACTTCAAACGCTA TATACCAAAGGCGATGATGAGTtcaaaaaacattgcttcaaaACGGTTAA TAACGATCACGATTGGAGTGGGAATACTTCAAAATTGTGTAAAAATGTAA ACCAGGTTGCCAAACACAATAATTTCACAATGTCTGCACTACACAATGCG GAACATAACTCCGGTAAACATCCTGATTGTAGCAACGCAGACAATTGCCT CAATTCTTCCAATCATCTCATCCCTAACGAATACACATTATCAATGAATA AAGATTGTGAAGCCAAGGCTTGTGGTCTTTTCATCGCAGGAATTGTGGGT GCTTTTGCAACATCGTTCATCCCGTTCGCTGGTCCAGGCATTGCTAAAGG TATTCAAATATCGCTTAAAACATACAAACTTATTAAACAGTTTGGTAAAG TCTTTAAACGTGTTGCAACCCAAGttaaagagaagagaaagaaAATTAGT AACTTACATaaaattttcagtaaaatcCTTGAATCTGGGACATTGGTTTT CACCAACAATTATCAGTTCTATTACTTTTTGGTGCCGACCATTTTATTGT TCCTGATCGCCATCGGGTTAGGATTCTATCGGCGTAAACGACCCAACAAA TTGAGCAAACGTCTCTTCATTATGTTCTTCTTATTGCTTGGAGTTGTGTG TGGTGTCATGACCTATCTATCATGGGTTTTCACTGATCTCATGCGAGAGG TTCTGAAACCTTTCGATACTCTTCTCGCTGTTGAAGTAAAAGAAATGAAG GGAATGACAATGATTAAAGGTGGTTATTTAATGGCCACTTTGTCTTGTCT TTTCTTCATTGTATCGGCTATAATGTCAAGAGATGAACCAATGGAACAAA GAAAACGAAGATTGCCAACAGACCCTGAAACCCAAAGCTTACCACTTGAA CAGGCTGATCAGCAAGATACAGAATTAGATTTACCAATGCAAGATGCAGA TTCACCAATAAAGGATGATGATATCATAGAAGTCCCATTGAATAAGACAG AGAGCCAATTGCAATCAGAtgctgaagaaaatgaagagttAGAAACAAGG AATGTGCAACTAGCTGAAGACCAGGTGGAAGACCAGCAATCAGGAGATGG GGATTTAGAAGCAAGGAGTCTACAACTAGCTGAACACCAGGTAGTCCAGC AATCAAGAGCCCAGAAATCAAAATCACCAAGGAGTTTGCCACCATCCAAC CGAAAATCGACTCAAAGAAGAAAAGTCGGAGGTAGAACAACAGGACAAAG GAAGGGAACCAGGAAACCTAAagGTGGTAGAACACGAAATGTGTCTGTGG AAGATCGATTCTCATCTTGGTTGGTGGCTTTTTCTGTCACAATTCCTGTC TATTATATCATCTTCACATCATTGACATTCCAAGCACCAGGATCTACAAC AATGGGAGAGAAATTGATTAATTTAAAGATCACACCATCACCGGCACTTG AGAAAGTTCGAGTCACTTTTGCGCATACTCATGCCTTAGAAAGGGAATTT GGTAATGTGGATGATTTCAACTCTGTCACCAATGACAACATATGTGACAT CACACAAGACATTGTGATCGCTATTATAAAAGGCATGAGTTTTACAATCC CCAATGTCGATGGCGGTATAACAGAGCTGTTTGATTTAAATACCAAAATA CGAAAGGTGGTTGCACAAGTCATTGAGCGCGTTCGAAAAGCTGGTGATCT CGACATCAACGGTTTCCATTTGTTTGATGGTCACTCCTTCGCTTTGTTGG ATATGCCAGTTAAAATGCttttcaatgtTGTGGTATATTTTCTGCCAATC TTTATCACCGCAATCATTACAATCTGTTTCTTGTTATCATTCATTCAAAT TCTTGGCTTATTCCGACAAAACCTTCGCATCAATCAATTCTTACATTCCT CTGAACAAATGGTGAGCTCACTCTCCATCTCCGCTCTATCAAACCAACTG GCCATTATTGGTCTGTTCTCCTTCCTTGATGGATTTTCATCACCAATGTT TGATTTTACACTGGAAATCGGGCCGCTCCTCAAACATGCTACTTTAGCGT CAATCCTTTTGATCGTTTCATCGGTTTTCCGAGTATTAACCGACTATGTA CCGATCGCGAGTGACGAAGCTGATATCATCGGGGATATGATTGATGACGA TAATGCAGAGGGTCTCGGCGAAGGCGATTGGGGCGATGACGAGGGTGGAG AAGAGCCTGATCCACCGACTGTTGATACCGAAGTTCCGAAAGGTAGAAAA CCGCCCGGTAAAGGCGGTAGACAACATACTAGACAACAAATAGTTCAACA CAAAGGAAAGAAGTAATGTTTTGTTTGAACTACCAATCAACTACCTGGAA ATTTTATTGAGTAAAGAACACTTAAAAAAAAGAgattcatagaaaaaaat acttGAATGACACTAATAACATTTATTACATATAGTAACGCTTAATCTTT GAAAATAGTTTATTTCGTTTatttcaataaatattttagtagcCAAAGGT CAGCATTTTGACGCCCTGGATCTTCCTCATCTACATTGAATTTGATATCT GATGGTGGTTATTTTCACATTATCTAAATTTCACAGCTTTTTATCTTTAC ATTATCTAAATTTCatagctttttaatttttgacagGACTACAGTTAATT ATACGATTATATTCAACTctttctaatttcaaacttctataattcgaatt tttctgtaattcaaactgCATCATTGCTCCTATGAACTGACAAGTCGTTT AAAAtactctgtaattcgaatccttCCCTATTTTGGAGCAAACTTCTGGT CCCGTAAAAGATCGAAATAAAGAGAGTCGAAT Run BLAST on NCBI transcript from alignment at scaffold_441:41468..47920+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065656 ID=TCONS_00065656|Name=TCONS_00065656|organism=Clytia hemisphaerica|type=transcript|length=6453bp|location=Sequence derived from alignment at scaffold_441:41468..47920+ (Clytia hemisphaerica) CTGGAATGTCCACGACTTGGCTGTCTATCTATCCATGTTTTATGCTTTAT
TTCCGATTCCGTATTGGGGATTATTCGTGAGCGCTGATTTTGGACGTCAT
GATGAAAAATCAACAGAACAAACGGTCAGCATCTTAACCCTTATCTTCCG
ACTATTACGACGTATTCTATACCCCTTAAAAGACTTTCTATCAGAGAGAA
AACATTGGAATACCTTCCTTAACACCATCGCAATCCTACTGGCAATTTCT
GGAGGATTTACAACCATGATGAGTACTCGCTATGAAAAACTCAACATCTC
GTTCAAAGCTAAAGGATCGTTACAAAGAATCGGGGATGATTTTCAAGAGA
TCCACGATAAGATCACTGATGTAGCAAATGGATTTATTATCGTTGCAGCT
AATTTGAATCCGTGTCTGAATTATAACACAAAACCCCCTCATGACggtaa
atcaatcaatcaaatacTTACAGATCACGTGACAAAAAAAGGGCGTGACG
GGCATGACGCAACAATGCTTCAAGGTGGCACCTCCATACTTCAAACGCTA
TATACCAAAGGCGATGATGAGTtcaaaaaacattgcttcaaaACGGTTAA
TAACGATCACGATTGGAGTGGGAATACTTCAAAATTGTGTAAAAATGTAA
ACCAGGTTGCCAAACACAATAATTTCACAATGTCTGCACTACACAATGCG
GAACATAACTCCGGTAAACATCCTGATTGTAGCAACGCAGACAATTGCCT
CAATTCTTCCAATCATCTCATCCCTAACGAATACACATTATCAATGAATA
AAGATTGTGAAGCCAAGGCTTGTGGTCTTTTCATCGCAGGAATTGTGGGT
GCTTTTGCAACATCGTTCATCCCGTTCGCTGGTCCAGGCATTGCTAAAGG
TATTCAAATATCGCTTAAAACATACAAACTTATTAAACAGTTTGGTAAAG
TCTTTAAACGTGTTGCAACCCAAGttaaagagaagagaaagaaAATTAGT
AACTTACATaaaattttcagtaaaatcCTTGAATCTGGGACATTGGTTTT
CACCAACAATTATCAGTTCTATTACTTTTTGGTGCCGACCATTTTATTGT
TCCTGATCGCCATCGGGTTAGGATTCTATCGGCGTAAACGACCCAACAAA
TTGAGCAAACGTCTCTTCATTATGTTCTTCTTATTGCTTGGAGTTGTGTG
TGGTGTCATGACCTATCTATCATGGGTTTTCACTGATCTCATGCGAGAGG
TTCTGAAACCTTTCGATACTCTTCTCGCTGTTGAAGTAAAAGAAATGAAG
GGAATGACAATGATTAAAGGTGGTTATTTAATGGCCACTTTGTCTTGTCT
TTTCTTCATTGTATCGGCTATAATGTCAAGAGATGAACCAATGGAACAAA
GAAAACGAAGATTGCCAACAGACCCTGAAACCCAAAGCTTACCACTTGAA
CAGGCTGATCAGCAAGATACAGAATTAGATTTACCAATGCAAGATGCAGA
TTCACCAATAAAGGATGATGATATCATAGAAGTCCCATTGAATAAGACAG
AGAGCCAATTGCAATCAGAtgctgaagaaaatgaagagttAGAAACAAGG
AATGTGCAACTAGCTGAAGACCAGGTACAATCAACGTCATGATATTTTAG
ATTCCCACAAAATCTTATAGCcccaaacgatttggaagcgctctagtTTA
ACTTAGGTTGGAAAGGATCTAAAAGTTCAAGAACGGTCCAGGGCTCAGAA
TAAAGCTATAAactctataaacccctccctcCCGAGTTTTTCTCTCGGAC
GAacttcaaatttctaaaagcgaggaaataacaaaaatttctcACAATAT
TTTGACGTAGGTGGAAGACCAGCAATCAGGAGATGGGGATTTAGAAGCAA
GGAGTCTACAACTAGCTGAACACCAGGTAGTCCAGCAATCAAGAGCCCAG
AAATCAAAATCACCAAGGAGTTTGCCACCATCCAACCGAAAATCGACTCA
AAGAAGAAAAGTCGGAGGTAGAACAACAGGACAAAGGAAGGGAACCAGGA
AACCTAAaggtatttttttaacaataatTGGACATGAGTTTCCAGTAACT
TTTTACAATGAAATAACTGAACTACATGGTtcaattttgtagattttcaa
attacATGTTTTAGGTATTTAAAAGGANGGGGATTTAGAAGCAAGGAGTC
TACAACTAGCTGAACACCAGGTAGTCCAGCAATCAAGAGCCCAGAAATCA
AAATCACCAAGGAGTTTGCCACCATCCAACCGAAAATCGACTCAAAGAAG
AAGAGTCGGAGGTAGAACAACAGGACAAAGGAAGGGAACCAGGAAACCta
aaggtatttttttaaacaataattGGACATGAGTTTCCAGTACCTTTTTA
CAATGAAATAACTGAACTACATGGTTCAATTTTGTCTTAGCATTTAaaag
gtttttatttttacatgaattttcCCGTCTcgtatcagacacatgtttca
aaCCAGGCCGGTGTCAtgtgttctggatgggaaataagtggcttcatttt
ccatcaaaaaacTTCGAATCTAAAATCGATTAGTAAACCCCTCACAGATC
AGTATCCGATGACATTAAGTGGAAGTAGTGGTATATAtgttaaattctga
aaatattagAATATCGCAAAattacaatatattttgacgTTGATTGTACT
TACATCTTATACTagatttagaaaatatttacttttttaaccTTTAAGGT
GGTAGAACACGAAATGTGTCTGTGGAAGATCGATTCTCATCTTGGTTGGT
GGCTTTTTCTGTCACAATTCCTGTCTATTATATCATCTTCACATCATTGA
CATTCCAAGCACCAGGATCTACAACAATGGGAGAGAAATTGATTAATTTA
AAGATCACACCATCACCGGCACTTGAGAAAGTTCGAGTCACTTTTGCGCA
TACTCATGCCTTAGAAAGGTAAAGTATTCTTTTTTGGTGCGAAATATTGT
TCagtcaaaaatgtaaaaaatataaaggaaGTGGCTCACAGGCATAAGAT
CTCCAAGAGGTTATTAGAACTAGGGATTTAAGCTAATGATGCTAAAATTA
TTAGGAAGTCTATCCCCTTCTATTTGCGTTAAACTTTGGATATCGAAAAT
TGTGGTGGAATGTCATCTGCTACTCCTAATTACTTACCGCCTAGACCAGA
TTATACAATCTAAAATCTACTCACTCGCTGAATTGTATAGGCTTAACAGG
TTTTAATTAATAACCCTTGGACTGATTGATAAATTCTCTATCGACTGAAA
TAACCGGGCATCTCTTTAAGTCGGTGTCTTTTTTGGGTATCTCCTGTTTG
AGACAACTTTTACACGagtatttcaaattattttgagaaaaagagaTAGG
ATGAAATATCCCGATTTTTTTAGTCCGGCTTTAATTGGATGAGTTGAACA
GCTATACTATTTAAGGACAAATTTAGGAGTAATCTAGGATGAGAGCATTC
TTCTGTGCGGATGGATGAAAAATTCCACAGTTAATTACTCCTCATCTATA
AACGATTCCGTCTCGAAATTATACTCTCAAATAGTGTACCATGTAAATTA
TCAGAAAATGTAAGCAAAATGATGAAAGGAGTAAAAAAGGatgagatatt
ccaaaaatattgataaaaaacgaGTTGTCtaaaagaatgttttaaaaact
aatagatattattttgaagatgaaaattatATGATTGTAATAATAAAGAG
tgtatctttcagaaaaaagcaATATATTCACCGAAAGAGTAGCataggat
gaaatatttttttttgtcacccgaaactgaaaattgtggaattcctcatc
cttttctactccttaaatttaaatttgaaaatttatggtATCAACAATAG
GTTTCCGAAAGGTTTAGATAATAAAACTGTTTTAAAAAATGGCCAtaata
aaaatcagaaaatcttgattttctgGAATATTTTATCCCAAACTACTCCG
AAATCTATATTATTGGAATCCTGGAGTCATTTCTGCAAATAATGTctaaa
aattcctaaaattgaagaagatattacgaaaaagatgattttaaaGATCC
CTGAAAAGTCATTCAGGTACATTCTAAATAAAACACCGACTTAAAGATTT
AGATGCTGACAACGCAGAAACTTCAATTTGTGTTCACGTGGTACGAGAGA
GAGGGGAGAAAATTGTTCCGCACCTTTTATCAAAATATGCTGTATAAGCA
AAAACATAAGGTTCTAATGTACTTCAGAAAATAGTAAACTCTGCGTCCGC
AGCCCGGAGGCGACCCAAAGACTTTACTTTCAATATGTCTTTCTAAGGTA
GGGCAGGGCGCCTCTCTTTCTCCCTGAATTAATTGCTGATTACCAAGCAG
AGAGTCATCAAGTAGATTTTTATACTATATATTTAAGTACgcgaaatctt
tggtatgaccgaggattgaacccacaaccttgggCACCGTGGGCAACCCT
GTACCTTTTTTCATTATTGACGCGATATTCAAAATTCATTCAATTCACAT
GAATCTCACACTACTTTATTTGCCAGGGAATTTGGTAATGTGGATGATTT
CAACTCTGTCACCAATGACAACATATGTGACATCACACAAGACATTGTGA
TCGCTATTATAAAAGGCATGAGTTTTACAATCCCCAATGTCGATGGCGGT
ATAACAGAGCTGTTTGATTTAAATACCAAAATACGAAAGGTGGTTGCACA
AGTCATTGAGCGCGTTCGAAAAGCTGGTGATCTCGACATCAACGGTTTCC
ATTTGTTTGATGGTCACTCCTTCGCTTTGTTGGATATGCCAGTTAAAATG
CGTATGATTTTTGCTTTATTTATGTTCTATAGTGGACTAGCCCATTTGAA
CTTCAATTTAAGGAATACAGTTGACCCTCTTTAATTCGGTTTTCAAGATG
AATTTGGTTTCGATCGAGAGTTTCTTCTCGACGGTGGATTTCAATATCAT
CGAATAaaggagcctatcgaatagtagtacgtcgaattagagagcatcaa
ctgtatacAATATTCTGATcattcgaactaattctcagtttCTGTCAATT
GACCAATTCTCTGTGATATCAGTATATTTTGGTTGGTAAAACTATAACAA
AATACAGAATAATGGAGACAAATCCCCCAGTTTGCATGTCTTGCTCACCT
TTATTTTTCTGTAATTGGAATCCCTCATTAGTTGACaattattataataa
aaaaatctttttaaagcgTTGACAACGCTTTATTTCAATTATCCATATTT
CTTATGATTTTGGGATAGATTAAACAGGCACTTATATTCACTACGAAGAT
TTTCCTGagattttcttgtatttttatgatctttttcagttttcaatgtT
GTGGTATATTTTCTGCCAATCTTTATCACCGCAATCATTACAATCTGTTT
CTTGTTATCATTCATTCAAATTCTTGGCTTATTCCGACAAAACCTTCGCA
TCAATCAATTCTTACATTCCTCTGAACAAATGGTGAGCTCACTCTCCATC
TCCGCTCTATCAAACCAACTGGCCATTATTGGTCTGTTCTCCTTCCTTGA
TGGATTTTCATCACCAATGTTTGATTTTACACTGGAAATCGGGCCGCTCC
TCAAACATGCTACTTTAGCGTCAATCCTTTTGATCGTTTCATCGGTTTTC
CGAGTATTAACCGACTATGTACCGATCGCGAGTGACGAAGCTGATATCAT
CGGGGATATGATTGATGACGATAATGCAGAGGGTCTCGGCGAAGGCGATT
GGGGCGATGACGAGGGTGGAGAAGAGCCTGATCCACCGACTGTTGATACC
GAAGTTCCGAAAGGTAGAAAACCGCCCGGTAAAGGCGGTAGACAACATAC
TAGACAACAAATAGTTCAACACAAAGGAAAGAAGTAATGTTTTGTTTGAA
CTACCAATCAACTACCTGGAAATTTTATTGAGTAAAGAACACTTAAAAAA
AAGAgattcatagaaaaaaatacttGAATGACACTAATAACATTTATTAC
ATATAGTAACGCTTAATCTTTGAAAATAGTTTATTTCGTTTatttcaata
aatattttagtagcCAAAGGTCAGCATTTTGACGCCCTGGATCTTCCTCA
TCTACATTGAATTTGATATCTGATGGTGGTTATTTTCACATTATCTAAAT
TTCACAGCTTTTTATCTTTACATTATCTAAATTTCatagctttttaattt
ttgacagGACTACAGTTAATTATACGATTATATTCAACTctttctaattt
caaacttctataattcgaatttttctgtaattcaaactgCATCATTGCTC
CTATGAACTGACAAGTCGTTTAAAAtactctgtaattcgaatccttCCCT
ATTTTGGAGCAAACTTCTGGTCCCGTAAAAGATCGAAATAAAGAGAGTCG
AAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00065656-exon-scaffold_441-1491911889:41468..43091 | TCONS_00065656-exon-scaffold_441-1491911889:41468..43091 | Clytia hemisphaerica | exon |
TCONS_00065656-exon-scaffold_441-1510915933:41468..43091 | TCONS_00065656-exon-scaffold_441-1510915933:41468..43091 | Clytia hemisphaerica | exon |
TCONS_00065656-exon-scaffold_441-1575043694:41468..43091 | TCONS_00065656-exon-scaffold_441-1575043694:41468..43091 | Clytia hemisphaerica | exon |
TCONS_00065656-exon-scaffold_441-1491911889:43328..43526 | TCONS_00065656-exon-scaffold_441-1491911889:43328..43526 | Clytia hemisphaerica | exon |
TCONS_00065656-exon-scaffold_441-1510915933:43328..43526 | TCONS_00065656-exon-scaffold_441-1510915933:43328..43526 | Clytia hemisphaerica | exon |
TCONS_00065656-exon-scaffold_441-1575043694:43328..43526 | TCONS_00065656-exon-scaffold_441-1575043694:43328..43526 | Clytia hemisphaerica | exon |
TCONS_00065656-exon-scaffold_441-1491911889:44216..44435 | TCONS_00065656-exon-scaffold_441-1491911889:44216..44435 | Clytia hemisphaerica | exon |
TCONS_00065656-exon-scaffold_441-1510915933:44216..44435 | TCONS_00065656-exon-scaffold_441-1510915933:44216..44435 | Clytia hemisphaerica | exon |
TCONS_00065656-exon-scaffold_441-1575043694:44216..44435 | TCONS_00065656-exon-scaffold_441-1575043694:44216..44435 | Clytia hemisphaerica | exon |
TCONS_00065656-exon-scaffold_441-1491911889:46044..46318 | TCONS_00065656-exon-scaffold_441-1491911889:46044..46318 | Clytia hemisphaerica | exon |
TCONS_00065656-exon-scaffold_441-1510915933:46044..46318 | TCONS_00065656-exon-scaffold_441-1510915933:46044..46318 | Clytia hemisphaerica | exon |
TCONS_00065656-exon-scaffold_441-1575043694:46044..46318 | TCONS_00065656-exon-scaffold_441-1575043694:46044..46318 | Clytia hemisphaerica | exon |
TCONS_00065656-exon-scaffold_441-1491911889:46857..47920 | TCONS_00065656-exon-scaffold_441-1491911889:46857..47920 | Clytia hemisphaerica | exon |
TCONS_00065656-exon-scaffold_441-1510915933:46857..47920 | TCONS_00065656-exon-scaffold_441-1510915933:46857..47920 | Clytia hemisphaerica | exon |
TCONS_00065656-exon-scaffold_441-1575043694:46857..47920 | TCONS_00065656-exon-scaffold_441-1575043694:46857..47920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_441 | supercontig | scaffold_441:41468..47920 + |
Blast
The following BLAST results are available for this feature:
|