TCONS_00065651 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065651
Unique NameTCONS_00065651
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065651 ID=TCONS_00065651|Name=TCONS_00065651|organism=Clytia hemisphaerica|type=transcript|length=2384bp
aaaaacttgaatgcatttttttttctttcaaaaaaaattgaagatttttg
aatttgttgTGAAGAGAGAAAGAGgagataaaaaaatcataagatCGAAG
ATTAAAAAGAAGGAACcaacgaaaaaagatttttcttcttAAAAGTCACT
AACATAAAACTTATATACGTACGAATTAGCAAGACTGACCTAAAGAAAAC
ACACGCATAATATGCTATAATAATATCATAAAGAGAAGTTGATCTCTTGT
CATCATTGATCgatcaactttttttataattgttCTCTGTGTTGATCTTT
CATCTTATAAtcataacaaaaagaaattggaTGTCATATTTTGGATGACA
CAAAAGAATAGGAAATTATATCAAGAAACGGTTTTTTTTGTGTCATACTT
AGCAACGTTTTATAGTGACAGTGtgttgtatttttttgtgagtGAAAAGA
CAAAGATACAGAATGGCAGaTACATCGGAATCTGAGTTGATAGTCGTGCA
ACCATTATCACCACCGAACCTCCCTGaaaatgctgatgtcagcattggCG
AACAAAACAATAACATTGGTAGCAACGAGGGAGCAGGGGATCAGAAAAAT
ATgCTGGAAGACTTCACAACGATAGCATCTCCTATGCCAATGACGATTGT
GCCGTGTTTTGTGTGTGGCGATCGATCTTCGGGACGTCATTACGGCGTCC
TGACGTGCGACGGCTGTCGTGGGTTTTTTAAACGAAGCGTTAGACGGGGA
GTTGGATACCATTGCCGTGATAAAGGGCGATGCGTCGTGAATCTGAGTCG
ACGAAATCAATGTCAGAGTTGCAGGTTTAAGAAATGTTTGAGTGTTGGTA
TGAGAAAAGAGGcTGTTCAACACGAGCGTGCACCACGTAACAAAAAGGGT
GGTCAAACACCGGACCGCCCAAATGAATTTTCACCTTATCCGCCACAAAT
TGTTTACCATCGAGTACCTGTATCAGGCGATGTCGCTGAACTACCAGTCA
CGTGCTCTAATATACCACCCGCAGCTCAAAGAGTACCGCCGACGCCTCTA
CCTACACAACGCCCTAAGCCGCCTCAAGTCTTTGTGAACACACCCAAGGA
GCTGTACGAAGTGTGTGCTCGCCTGTTATACGAAGCTATCTCTTGGGCAC
GAAACATTCCGACTTTTTCTCAATTACCGTTAGATGATCAGGCTTTACTA
TTGGAATACAGCTGGAGTGAAATATTTCTACTTAACCTTGCGCAGCTCAA
TATTCCTCTTGGTATGGAAACAATGATCAAGCTGACTCAGCAATCTAAAG
AATATCTGAACGATAAAAGTGATATTAACAAAGACACTTTAAACGAATTG
GTGCATATACAATCAGTTGTTTTCAAATTGAAAACATTAAACATGTCATC
TGCTGAATATTCTTGCGTCAAAGCCATTGTACTCTTCAAACCAGATCTTC
GTCGAATAAAGTCTCGTCAACATATCGAAAACCTTCAAGAACAAGCACAA
TTAAGACTCTTAGATTCTGTTATGGTAAAAGGACCTCGTGCAAGGTTCGG
AAAAATCCTTCTCAAATTATCACTATTGGGTGAAGTTTCCCCGTCTTTCA
TTGAGAAATGTTTCTTCAAAGGTGGACTCGAAAATATAAGTGACGAATTT
TGCAGTAGCTCCACTGAATCTAATTCTAACCAATCAGATATGATATCAAC
ACtcaagaaccaatcagaaaagaCTCCTGTTGATAGAAACCAATCAGAGG
CAATCACGCCAGAAAACAATAAATCAATCAGCCAATCAGAAGGCGAGAAA
GTTAACGGTGACCAATCAAAAGACTTGAATTTCTTTAACCATGAAATTAA
ACAAGAAGTTGAGGATATTGTGCAAGTTGTTGCTTCTGAAACTTGATTTT
TGTGAAGTGGAACTCCTCTAATTGCATTCAGGAGTCTAGGGTTAAGGCTG
TTGCCGTTACGAACTAAGAAGTTTACGAATTTTCCCCGTTGGGATACTGC
AAAGATGCAGCTTTATCATGCATATATAATTTGGATAAGACCTGCAGTTA
TTAACAATTTTTGTCACCCAGACGTTACTTTTCTTAAAGTCCTTTGAACT
CAAAAACTGTAGTCTCTTataagagaactaattttgcctaaaaagtttta
aatttgcGGAACTTATGATTTTGGCGAGTGACACAAATTTTCCTAAATGC
TGAAAAGAGTATTTGAGTTGAGGAAAAAATTAGGGTTTTTTCATAATAAA
TTATGATTAATTAACTAGTGAATTTTGATAAACTCTTCGAACTAACTGAA
ATTAAacctcttttgttttgaaatttgtacttaAAGGAGATTTGTAAATA
TTGAGATATATAGAATTGTTAACGAATAATATGT
Run BLAST on NCBI

protein sequence of TCONS_00065651-protein

>TCONS_00065651-protein ID=TCONS_00065651-protein|Name=TCONS_00065651-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp
MADTSESELIVVQPLSPPNLPENADVSIGEQNNNIGSNEGAGDQKNMLED
FTTIASPMPMTIVPCFVCGDRSSGRHYGVLTCDGCRGFFKRSVRRGVGYH
CRDKGRCVVNLSRRNQCQSCRFKKCLSVGMRKEAVQHERAPRNKKGGQTP
DRPNEFSPYPPQIVYHRVPVSGDVAELPVTCSNIPPAAQRVPPTPLPTQR
PKPPQVFVNTPKELYEVCARLLYEAISWARNIPTFSQLPLDDQALLLEYS
WSEIFLLNLAQLNIPLGMETMIKLTQQSKEYLNDKSDINKDTLNELVHIQ
SVVFKLKTLNMSSAEYSCVKAIVLFKPDLRRIKSRQHIENLQEQAQLRLL
DSVMVKGPRARFGKILLKLSLLGEVSPSFIEKCFFKGGLENISDEFCSSS
TESNSNQSDMISTLKNQSEKTPVDRNQSEAITPENNKSISQSEGEKVNGD
QSKDLNFFNHEIKQEVEDIVQVVASET
Run BLAST on NCBI

transcript from alignment at scaffold_441:20137..26606+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065651 ID=TCONS_00065651|Name=TCONS_00065651|organism=Clytia hemisphaerica|type=transcript|length=6470bp|location=Sequence derived from alignment at scaffold_441:20137..26606+ (Clytia hemisphaerica)
aaaaacttgaatgcatttttttttctttcaaaaaaaattgaagatttttg
aatttgttgTGAAGAGAGAAAGAGgagataaaaaaatcataagatCGAAG
ATTAAAAAGAAGGAACcaacgaaaaaagatttttcttcttAAAAGTCACT
AACATAAAACTTATATACGTACGAATTAGCAAGACTGACCTAAAGAAAAC
ACACGCATAATATGCTATAATAATATCATAAAGAGAAGTTGATCTCTTGT
CATCATTGATCgatcaactttttttataattgttCTCTGTGTTGATCTTT
CATCTTATAAtcataacaaaaagaaattggaTGTCATATTTTGGATGACA
CAAAAGAATAGGAAATTATATCAAGAAACGGTTTTTTTTGTGTCATACTT
AGCAACGTTTTATAGTGACAGTGtgttgtatttttttgtgagtGAAAAGA
CAAAGATACAGAATGGCAGGTAAtataataatttcttttttatacatTAT
CATAATTTTTGAGCATGATTTTTTATAGCTAGCTGCAATGATCTTTCAGT
ATGGATTTCGAGCAGCTTGCAATCGAATACAGTATCCAATAATTTATAAC
TTACAGAGTTTACTTAGCCATTCTTTCCCCGTTTTTAGCTAGGAATTAAG
GTATGGATGAGCAAAACAGGAAAATTTAgggcaattcatgatattcatga
tgtaatctttgcgCCTAAACGATAGATGTTACGTAACAACNCCATTCTTT
CCCCGTTTTTAGCTAGGAATTAAGGTATGGATGAGCAAAACAGGAAAATT
TAgggcaattcatgatattcatgatgtaatctttgcgCCTAAACGATAGA
TGTTACGTAACAACTTTGCCGCCATTATTGGGGTCCTTGCTTGGAAAACC
TTGGGGAACGCATTtgttttgccaccaataatATGGCGGCCAAATTTTTT
GATTCGGAGTGTCAATCAacgaaaagattacatcatgaatatcaagaatt
ttcttGTTGCAATTTATCTGTAAGAACAATAAGTCTCAACCAggggaaaa
atcaaaacttgatATGTAAGCATCTGAAGCATAAGTTTAGGTACAAAGTG
GCCTTAAGATAAAAACATCCAAGAGATTAAACCCTAGAGAGACTGGTTcg
agatacacgtttttttataaaaacatccacatCTTGGGATGTTCACaact
ttttgcaattttagcctaaaatgttcttaacatgttctctttttaccatt
ttgtgagtatttttggccattttcgtaaaggattgggtgttttagagtcc
gcaaagccttaaaattatcttaacttgttcttagtattttggccatcgat
gAAGCTTCTtatattgtttgttcttataagaaaagacGTGTTAAATTAac
cctcttttatcttttccagaTACATCGGAATCTGAGTTGATAGTCGTGCA
ACCATTATCACCACCGAACCTCCCTGaaaatgctgatgtcagcattggCG
AACAAAACAATAACATTGGTAGCAACGAGGGAGCAGGGGATCAGAAAAAT
ATggtaattcaaaattcaaaatttactcTCTTAAAAGGTCGTGATTTTTC
ataatttggacaaaaatggaGTGAACATCgataagaattttgaaaaaagt
ctcaGAAACGCCAATTTCCCTcactaagggtcgattttcgatttttggtt
CGGACATATTAAATAAAATAGTTTAAGAATGAAAAGCTGCCTATAAACAT
TGCTTAATCTAGGTCAATTTTAGAAGGAATCATAGTAGTAAAACCTGAGA
TGTTTCGTTTGTGTCATTAAAATAAGAACACGGTAAGAACAATGAGAACA
ATGGGCTGGTAGTAGATATACGAGATCAAGTTGGCCTTGAGCTTTGGCAc
gttttttatttcatatttttttcctgatttctcACCTTCGACTGCTGAAA
TTCTCCCAGCTCTTCCAGTAGATGATTGTTCTTATAAGTTATTCCTATAT
TAATAATTTtctaattattttcttttcataaGCTGGAAGACTTCACAACG
ATAGCATCTCCTATGCCAATGACGATTGTGCCGTGTTTTGTGTGTGGCGA
TCGATCTTCGGGACGTCATTACGGCGTCCTGACGTGCGACGGCTGTCGTG
GGTTTTTTAAACGAAGCGTTAGACGGGGAGTTGGATACCATTGCCGTGAT
AAAGGGCGATGCGTTGTGAATCTGAGTCGACGAAATCAATGTCAGAGTTG
CAGGTTTAAGAAATGTTTGAGTGTTGGTATGAGAAAAGAGGGNTGCCTAT
AAACATTGCTTAATCTAAGTCAATTTTAGAAGGAATCATAGTAGTAAAAC
CTGAGATGTTTCGTTTGTGTcattaaaataagaacatggtaAGAACAAAT
GGTAAGAACAATGAAGATCAATGGGCTGGTAGTAGATAAACGAGATCAAG
TTGGCCTTGAGCTTTGGCAcgttttttatttcatatttttttccttattt
ctcACCTTCGACTGCTGAAATTCTACCAGCTCTTCCAGTAGATGATTGTT
CTTATAAGTCATTCCTATAGTAATAATTTtctaattattttcttttcata
aGCTGGAAGACTTCACAACGATAGCATCTCCTATGCCAATGACGATTGTG
CCGTGTTTTGTGTGTGGCGATCGATCTTCGGGACGTCATTACGGCGTCCT
GACGTGCGACGGCTGTCGTGGGTTTTTTAAACGAAGCGTTAGACGGGGAG
TTGGATACCATTGCCGTGATAAAGGGCGATGCGTCGTGAATCTGAGTCGA
CGAAATCAATGTCAGAGTTGCAGGTTTAAGAAATGTTTGAGTGTTGGTAT
GAGAAAAGAGGGTAAGGCTTCATTTTTAACAGCACGTAAGGGGTATATCG
CGGTtatagcatgaaggtagagcatccagcttaGGTGTGCAAGGTCGTGG
GTTCNTGGGTATATCGCGGttgtagcatgaaggtagagcatccagcttaG
GTGTgcaaggtcgtgggttcaatccctggccgggtcataccaaCGACGAT
GTACTTAGTGCAAGATGGTACCTGATGCCTATCTCTGCTTGATGTTCAGT
AATAATAGGAAAATCGAgggcaatccagggagaaaaagTGGCGCCCTCTC
CTACCTTTCGGATAAGACAGCtattgaaagaggagccttcaggtcgcctc
tgattcatgatattcatgacgtaatgttttctacggaaagacacCGGTTT
ttaccagtagtggcaaattttaaacaacttttgtctagtttaaatttgcc
actactggcttaAACCGGGTTATATTATTCGAAAATGTTATAGAATGGTT
TCCATATAAAATGATATCCTTTCAACCAATATCAATTTCAAGGTTGCAGA
TCACCTTTCAAaagttaaatctttttttcagcTGTTCAACACGAGCGTGC
ACCACGTAACAAAAAGGGTGGTCAAACACCGGACCGCCCAAATGAATTTT
CACCTTATCCGCCACAAATTGTTTACCATCGAGTACCTGTATCAGGTAAT
ATTTAATGATTCGACTTTGCTGTTCGCCTTacacatttgttttttttaag
aaacacacttttaagaaacatgaggctcagaatgcctaaaaactaagaaa
catgctgaggctgagaatgagaaaataacattttttaattcggttttttt
taagaaccttccaatccagcctttcataaggctgattatgtcaaaaagat
ttagaaacatgtaagaaacatttaaggctgaaaaggccgatttcttaaga
aacattgaggctgcttggtaaaactattttctttaaaaaaaaaacgtgta
tacattGTTCTTTGAACtgttgttattgttttgttttttttagtgtTGTT
AACCATTTCATTGAAACAATTCCCTCGCGTTGTTTGTTGCTTCCTTTTTT
TGAACACTTTTTTATAGGGGGCGAGTCTCAATGCCAAAACAAAGGCAAAA
GCTTTGGTGCAGGCTGGAGACTGGAGATCTCCACTACGAGCTTACCATAT
AATATAACATAATAGCgattttatgtatttgcacttttgaggacggtaaa
gcgatttggaatagccCGCAGTTCTCacctgcaaaatcgaggacggtaaa
agtgctgatttaccgtcgtcctcagttgatcaggatctactcaaactACT
AGTAGAGCCTTACCGTCTCCGCCGCTGAAAaatacacatacataaactcg
NCTCAAACTACTAGTAGAGCCTTACCGTCTCCACTGCTGAAAaatacaca
tacataaactcggtaatgaaGTTAAACACTTGTAGTTAGCAAGTTCgata
attgaaaataataattttttatcttctcgtTTTGTCATTTAGGCGATGTC
GCTGAACTACCAGTCACGTGCTCTAATATACCACCCGCAGCTCAAAGAGT
ACCGCCGACGCCTCTACCTACACAACGCCCTAAGCCGCCTCAAGTCTTTG
TGAACACACCCAAGGAGCTGTACGAAGTGTGTGCTCGCCTGTTATACGAA
GCTATCTCTTGGGCACGAAACATTCCGACTTTTTCTCAATTACCGTTAGA
TGATCAGGCTTTACTATTGGAATACAGCTGGAGTGAAATATTTCTACTTA
ACCTTGCGCAGCTCAATATTCCTCTTGGTATGGAAACAATGATCAAGCTG
ACTCAGCAATCTAAAGAATATCTGAACGATAAAAGTGATATTAACAAAGA
CACTTTAAACGAATTGGTGCATATACAATCAGTTGTTTTCAAATTGAAAA
CATTAAACATGTCATCTGCTGAATATTCTTGCGTCAAAGCCATTGTACTC
TTCAAACCAGGTGAatttctttataaattgctCAAGTCAAGGGATCAACC
TGCTGGATGTTTCTAGTGGGTGCCCTGAGTATtcagtaccttaagggaag
aaattttggcgggaggGAAATTTGGTGGATTCGTCTGaaacccgccaaat
taaattcctcacgaaaaaactttttcagccatGCGCCAAATTGAAtcccg
ccaattttttttccctTAAAGTACTTCTCAATATCCACATGGGGTGACAT
TCTTTCAGATGGGGTTACAGGGATGATGCCTTCTTGACTCTACATGCGCC
AATGAGAATCATCCATATATAAACAAATTTATAATCAAAACGAAAAATCA
CGAAATgagccaaaatttctttcattcaaaaataattaGTTTTTGAATTA
AGGTTAAGGTTTTTAGGTTTTTACCAGTTTTCAAGATAACAATGATTTTA
CTCTTCTGAGGACGAATTATGCTTCCAAATGAATAGAATATACAGTTGAC
TGTCGCTAATTCGATATTTTATCATTCAATACGCCCTATTCGGTAATATC
GAAAGTCACCGTACCCTTCACAAGAATTTCTTCTAGATAACGATGAAACT
Aaacttattcgatgaaaattaaattcccttttgaaaatcgaattagaaag
cgtcaaCTTTATGACTATCTTCTTTTTTAGATCTTCGTCGAATAAAGTCT
CGTCAACATATCGAAAACCTTCAAGAACAAGCACAATTAAGACTCTTAGA
TTCTGTTATGGTAAAAGGACCTCGTGCAAGGTTCGGAAAAATCCTTCTCA
AATTATCACTATTGGGTGAAGTTTCCCCGTCTTTCATTGAGAAATGTTTC
TTCAAAGGTGGACTCGAAAATATAAGTGACGAATTTTGCAGTAGCTCCAC
TGAATCTAATTCTAACCAATCAGATATGATATCAACACtcaagaaccaat
cagaaaagaCTCCTGTTGATAGAAACCAATCAGAGGCAATCACGCCAGAA
AACAATAAATCAATCAGCCAATCAGAAGGCGAGAAAGTTAACGGTGACCA
ATCAAAAGACTTGAATTTCTTTAACCATGAAATTAAACAAGAAGTTGAGG
ATATTGTGCAAGTTGTTGCTTCTGAAACTTGATTTTTGTGAAGTGGAACT
CCTCTAATTGCATTCAGGAGTCTAGGGTTAAGGCTGTTGCCGTTACGAAC
TAAGAAGTTTACGAATTTTCCCCGTTGGGATACTGCAAAGATGCAGCTTT
ATCATGCATATATAATTTGGATAAGACCTGCAGTTATTAACAATTTTTGT
CACCCAGACGTTACTTTTCTTAAAGTCCTTTGAACTCAAAAACTGTAGTC
TCTTataagagaactaattttgcctaaaaagttttaaatttgcGGAACTT
ATGATTTTGGCGAGTGACACAAATTTTCCTAAATGCTGAAAAGAGTATTT
GAGTTGAGGAAAAAATTAGGGTTTTTTCATAATAAATTATGATTAATTAA
CTAGTGAATTTTGATAAACTCTTCGAACTAACTGAAATTAAacctctttt
gttttgaaatttgtacttaAAGGAGATTTGTAAATATTGAGATATATAGA
ATTGTTAACGAATAATATGT

Coding sequence (CDS) from alignment at scaffold_441:20137..26606+

>TCONS_00065651 ID=TCONS_00065651|Name=TCONS_00065651|organism=Clytia hemisphaerica|type=CDS|length=8604bp|location=Sequence derived from alignment at scaffold_441:20137..26606+ (Clytia hemisphaerica)
ATGGCAGaTACATCGGAATCTGAGTTGATAGTCGTGCAACCATTATCACC
ACCGAACCTCCCTGaaaatgctgatgtcagcattggCGAACAAAACAATA
ACATTGGTAGCAACGAGGGAGCAGGGGATCAGAAAAATATgCTGGAAGAC
TTCACAACGATAGCATCTCCTATGCCAATGACGATTGTGCCGTGTTTTGT
GTGTGGCGATCGATCTTCGGGACGTCATTACGGCGTCCTGACGTGCGACG
GCTGTCGTGGGTTTTTTAAACGAAGCGTTAGACGGGGAGTTGGATACCAT
TGCCGTGATAAAGGGCGATGCGTCGTGAATCTGAGTCGACGAAATCAATG
TCAGAGTTGCAGGTTTAAGAAATGTTTGAGTGTTGGTATGAGAAAAGAGG
cTGTTCAACACGAGCGTGCACCACGTAACAAAAAGGGTGGTCAAACACCG
GACCGCCCAAATGAATTTTCACCTTATCCGCCACAAATTGTTTACCATCG
AGTACCTGTATCAGGCGATGTCGCTGAACTACCAGTCACGTGCTCTAATA
TACCACCCGCAGCTCAAAGAGTACCGCCGACGCCTCTACCTACACAACGC
CCTAAGCCGCCTCAAGTCTTTGTGAACACACCCAAGGAGCTGTACGAAGT
GTGTGCTCGCCTGTTATACGAAGCTATCTCTTGGGCACGAAACATTCCGA
CTTTTTCTCAATTACCGTTAGATGATCAGGCTTTACTATTGGAATACAGC
TGGAGTGAAATATTTCTACTTAACCTTGCGCAGCTCAATATTCCTCTTGG
TATGGAAACAATGATCAAGCTGACTCAGCAATCTAAAGAATATCTGAACG
ATAAAAGTGATATTAACAAAGACACTTTAAACGAATTGGTGCATATACAA
TCAGTTGTTTTCAAATTGAAAACATTAAACATGTCATCTGCTGAATATTC
TTGCGTCAAAGCCATTGTACTCTTCAAACCAGATCTTCGTCGAATAAAGT
CTCGTCAACATATCGAAAACCTTCAAGAACAAGCACAATTAAGACTCTTA
GATTCTGTTATGGTAAAAGGACCTCGTGCAAGGTTCGGAAAAATCCTTCT
CAAATTATCACTATTGGGTGAAGTTTCCCCGTCTTTCATTGAGAAATGTT
TCTTCAAAGGTGGACTCGAAAATATAAGTGACGAATTTTGCAGTAGCTCC
ACTGAATCTAATTCTAACCAATCAGATATGATATCAACACtcaagaacca
atcagaaaagaCTCCTGTTGATAGAAACCAATCAGAGGCAATCACGCCAG
AAAACAATAAATCAATCAGCCAATCAGAAGGCGAGAAAGTTAACGGTGAC
CAATCAAAAGACTTGAATTTCTTTAACCATGAAATTAAACAAGAAGTTGA
GGATATTGTGCAAGTTGTTGCTTCTGAAACTTGAATGGCAGaTACATCGG
AATCTGAGTTGATAGTCGTGCAACCATTATCACCACCGAACCTCCCTGaa
aatgctgatgtcagcattggCGAACAAAACAATAACATTGGTAGCAACGA
GGGAGCAGGGGATCAGAAAAATATgCTGGAAGACTTCACAACGATAGCAT
CTCCTATGCCAATGACGATTGTGCCGTGTTTTGTGTGTGGCGATCGATCT
TCGGGACGTCATTACGGCGTCCTGACGTGCGACGGCTGTCGTGGGTTTTT
TAAACGAAGCGTTAGACGGGGAGTTGGATACCATTGCCGTGATAAAGGGC
GATGCGTCGTGAATCTGAGTCGACGAAATCAATGTCAGAGTTGCAGGTTT
AAGAAATGTTTGAGTGTTGGTATGAGAAAAGAGGcTGTTCAACACGAGCG
TGCACCACGTAACAAAAAGGGTGGTCAAACACCGGACCGCCCAAATGAAT
TTTCACCTTATCCGCCACAAATTGTTTACCATCGAGTACCTGTATCAGGC
GATGTCGCTGAACTACCAGTCACGTGCTCTAATATACCACCCGCAGCTCA
AAGAGTACCGCCGACGCCTCTACCTACACAACGCCCTAAGCCGCCTCAAG
TCTTTGTGAACACACCCAAGGAGCTGTACGAAGTGTGTGCTCGCCTGTTA
TACGAAGCTATCTCTTGGGCACGAAACATTCCGACTTTTTCTCAATTACC
GTTAGATGATCAGGCTTTACTATTGGAATACAGCTGGAGTGAAATATTTC
TACTTAACCTTGCGCAGCTCAATATTCCTCTTGGTATGGAAACAATGATC
AAGCTGACTCAGCAATCTAAAGAATATCTGAACGATAAAAGTGATATTAA
CAAAGACACTTTAAACGAATTGGTGCATATACAATCAGTTGTTTTCAAAT
TGAAAACATTAAACATGTCATCTGCTGAATATTCTTGCGTCAAAGCCATT
GTACTCTTCAAACCAGATCTTCGTCGAATAAAGTCTCGTCAACATATCGA
AAACCTTCAAGAACAAGCACAATTAAGACTCTTAGATTCTGTTATGGTAA
AAGGACCTCGTGCAAGGTTCGGAAAAATCCTTCTCAAATTATCACTATTG
GGTGAAGTTTCCCCGTCTTTCATTGAGAAATGTTTCTTCAAAGGTGGACT
CGAAAATATAAGTGACGAATTTTGCAGTAGCTCCACTGAATCTAATTCTA
ACCAATCAGATATGATATCAACACtcaagaaccaatcagaaaagaCTCCT
GTTGATAGAAACCAATCAGAGGCAATCACGCCAGAAAACAATAAATCAAT
CAGCCAATCAGAAGGCGAGAAAGTTAACGGTGACCAATCAAAAGACTTGA
ATTTCTTTAACCATGAAATTAAACAAGAAGTTGAGGATATTGTGCAAGTT
GTTGCTTCTGAAACTTGAATGGCAGaTACATCGGAATCTGAGTTGATAGT
CGTGCAACCATTATCACCACCGAACCTCCCTGaaaatgctgatgtcagca
ttggCGAACAAAACAATAACATTGGTAGCAACGAGGGAGCAGGGGATCAG
AAAAATATgCTGGAAGACTTCACAACGATAGCATCTCCTATGCCAATGAC
GATTGTGCCGTGTTTTGTGTGTGGCGATCGATCTTCGGGACGTCATTACG
GCGTCCTGACGTGCGACGGCTGTCGTGGGTTTTTTAAACGAAGCGTTAGA
CGGGGAGTTGGATACCATTGCCGTGATAAAGGGCGATGCGTCGTGAATCT
GAGTCGACGAAATCAATGTCAGAGTTGCAGGTTTAAGAAATGTTTGAGTG
TTGGTATGAGAAAAGAGGcTGTTCAACACGAGCGTGCACCACGTAACAAA
AAGGGTGGTCAAACACCGGACCGCCCAAATGAATTTTCACCTTATCCGCC
ACAAATTGTTTACCATCGAGTACCTGTATCAGGCGATGTCGCTGAACTAC
CAGTCACGTGCTCTAATATACCACCCGCAGCTCAAAGAGTACCGCCGACG
CCTCTACCTACACAACGCCCTAAGCCGCCTCAAGTCTTTGTGAACACACC
CAAGGAGCTGTACGAAGTGTGTGCTCGCCTGTTATACGAAGCTATCTCTT
GGGCACGAAACATTCCGACTTTTTCTCAATTACCGTTAGATGATCAGGCT
TTACTATTGGAATACAGCTGGAGTGAAATATTTCTACTTAACCTTGCGCA
GCTCAATATTCCTCTTGGTATGGAAACAATGATCAAGCTGACTCAGCAAT
CTAAAGAATATCTGAACGATAAAAGTGATATTAACAAAGACACTTTAAAC
GAATTGGTGCATATACAATCAGTTGTTTTCAAATTGAAAACATTAAACAT
GTCATCTGCTGAATATTCTTGCGTCAAAGCCATTGTACTCTTCAAACCAG
ATCTTCGTCGAATAAAGTCTCGTCAACATATCGAAAACCTTCAAGAACAA
GCACAATTAAGACTCTTAGATTCTGTTATGGTAAAAGGACCTCGTGCAAG
GTTCGGAAAAATCCTTCTCAAATTATCACTATTGGGTGAAGTTTCCCCGT
CTTTCATTGAGAAATGTTTCTTCAAAGGTGGACTCGAAAATATAAGTGAC
GAATTTTGCAGTAGCTCCACTGAATCTAATTCTAACCAATCAGATATGAT
ATCAACACtcaagaaccaatcagaaaagaCTCCTGTTGATAGAAACCAAT
CAGAGGCAATCACGCCAGAAAACAATAAATCAATCAGCCAATCAGAAGGC
GAGAAAGTTAACGGTGACCAATCAAAAGACTTGAATTTCTTTAACCATGA
AATTAAACAAGAAGTTGAGGATATTGTGCAAGTTGTTGCTTCTGAAACTT
GAATGGCAGaTACATCGGAATCTGAGTTGATAGTCGTGCAACCATTATCA
CCACCGAACCTCCCTGaaaatgctgatgtcagcattggCGAACAAAACAA
TAACATTGGTAGCAACGAGGGAGCAGGGGATCAGAAAAATATgCTGGAAG
ACTTCACAACGATAGCATCTCCTATGCCAATGACGATTGTGCCGTGTTTT
GTGTGTGGCGATCGATCTTCGGGACGTCATTACGGCGTCCTGACGTGCGA
CGGCTGTCGTGGGTTTTTTAAACGAAGCGTTAGACGGGGAGTTGGATACC
ATTGCCGTGATAAAGGGCGATGCGTCGTGAATCTGAGTCGACGAAATCAA
TGTCAGAGTTGCAGGTTTAAGAAATGTTTGAGTGTTGGTATGAGAAAAGA
GGcTGTTCAACACGAGCGTGCACCACGTAACAAAAAGGGTGGTCAAACAC
CGGACCGCCCAAATGAATTTTCACCTTATCCGCCACAAATTGTTTACCAT
CGAGTACCTGTATCAGGCGATGTCGCTGAACTACCAGTCACGTGCTCTAA
TATACCACCCGCAGCTCAAAGAGTACCGCCGACGCCTCTACCTACACAAC
GCCCTAAGCCGCCTCAAGTCTTTGTGAACACACCCAAGGAGCTGTACGAA
GTGTGTGCTCGCCTGTTATACGAAGCTATCTCTTGGGCACGAAACATTCC
GACTTTTTCTCAATTACCGTTAGATGATCAGGCTTTACTATTGGAATACA
GCTGGAGTGAAATATTTCTACTTAACCTTGCGCAGCTCAATATTCCTCTT
GGTATGGAAACAATGATCAAGCTGACTCAGCAATCTAAAGAATATCTGAA
CGATAAAAGTGATATTAACAAAGACACTTTAAACGAATTGGTGCATATAC
AATCAGTTGTTTTCAAATTGAAAACATTAAACATGTCATCTGCTGAATAT
TCTTGCGTCAAAGCCATTGTACTCTTCAAACCAGATCTTCGTCGAATAAA
GTCTCGTCAACATATCGAAAACCTTCAAGAACAAGCACAATTAAGACTCT
TAGATTCTGTTATGGTAAAAGGACCTCGTGCAAGGTTCGGAAAAATCCTT
CTCAAATTATCACTATTGGGTGAAGTTTCCCCGTCTTTCATTGAGAAATG
TTTCTTCAAAGGTGGACTCGAAAATATAAGTGACGAATTTTGCAGTAGCT
CCACTGAATCTAATTCTAACCAATCAGATATGATATCAACACtcaagaac
caatcagaaaagaCTCCTGTTGATAGAAACCAATCAGAGGCAATCACGCC
AGAAAACAATAAATCAATCAGCCAATCAGAAGGCGAGAAAGTTAACGGTG
ACCAATCAAAAGACTTGAATTTCTTTAACCATGAAATTAAACAAGAAGTT
GAGGATATTGTGCAAGTTGTTGCTTCTGAAACTTGAATGGCAGaTACATC
GGAATCTGAGTTGATAGTCGTGCAACCATTATCACCACCGAACCTCCCTG
aaaatgctgatgtcagcattggCGAACAAAACAATAACATTGGTAGCAAC
GAGGGAGCAGGGGATCAGAAAAATATgCTGGAAGACTTCACAACGATAGC
ATCTCCTATGCCAATGACGATTGTGCCGTGTTTTGTGTGTGGCGATCGAT
CTTCGGGACGTCATTACGGCGTCCTGACGTGCGACGGCTGTCGTGGGTTT
TTTAAACGAAGCGTTAGACGGGGAGTTGGATACCATTGCCGTGATAAAGG
GCGATGCGTCGTGAATCTGAGTCGACGAAATCAATGTCAGAGTTGCAGGT
TTAAGAAATGTTTGAGTGTTGGTATGAGAAAAGAGGcTGTTCAACACGAG
CGTGCACCACGTAACAAAAAGGGTGGTCAAACACCGGACCGCCCAAATGA
ATTTTCACCTTATCCGCCACAAATTGTTTACCATCGAGTACCTGTATCAG
GCGATGTCGCTGAACTACCAGTCACGTGCTCTAATATACCACCCGCAGCT
CAAAGAGTACCGCCGACGCCTCTACCTACACAACGCCCTAAGCCGCCTCA
AGTCTTTGTGAACACACCCAAGGAGCTGTACGAAGTGTGTGCTCGCCTGT
TATACGAAGCTATCTCTTGGGCACGAAACATTCCGACTTTTTCTCAATTA
CCGTTAGATGATCAGGCTTTACTATTGGAATACAGCTGGAGTGAAATATT
TCTACTTAACCTTGCGCAGCTCAATATTCCTCTTGGTATGGAAACAATGA
TCAAGCTGACTCAGCAATCTAAAGAATATCTGAACGATAAAAGTGATATT
AACAAAGACACTTTAAACGAATTGGTGCATATACAATCAGTTGTTTTCAA
ATTGAAAACATTAAACATGTCATCTGCTGAATATTCTTGCGTCAAAGCCA
TTGTACTCTTCAAACCAGATCTTCGTCGAATAAAGTCTCGTCAACATATC
GAAAACCTTCAAGAACAAGCACAATTAAGACTCTTAGATTCTGTTATGGT
AAAAGGACCTCGTGCAAGGTTCGGAAAAATCCTTCTCAAATTATCACTAT
TGGGTGAAGTTTCCCCGTCTTTCATTGAGAAATGTTTCTTCAAAGGTGGA
CTCGAAAATATAAGTGACGAATTTTGCAGTAGCTCCACTGAATCTAATTC
TAACCAATCAGATATGATATCAACACtcaagaaccaatcagaaaagaCTC
CTGTTGATAGAAACCAATCAGAGGCAATCACGCCAGAAAACAATAAATCA
ATCAGCCAATCAGAAGGCGAGAAAGTTAACGGTGACCAATCAAAAGACTT
GAATTTCTTTAACCATGAAATTAAACAAGAAGTTGAGGATATTGTGCAAG
TTGTTGCTTCTGAAACTTGAATGGCAGaTACATCGGAATCTGAGTTGATA
GTCGTGCAACCATTATCACCACCGAACCTCCCTGaaaatgctgatgtcag
cattggCGAACAAAACAATAACATTGGTAGCAACGAGGGAGCAGGGGATC
AGAAAAATATgCTGGAAGACTTCACAACGATAGCATCTCCTATGCCAATG
ACGATTGTGCCGTGTTTTGTGTGTGGCGATCGATCTTCGGGACGTCATTA
CGGCGTCCTGACGTGCGACGGCTGTCGTGGGTTTTTTAAACGAAGCGTTA
GACGGGGAGTTGGATACCATTGCCGTGATAAAGGGCGATGCGTCGTGAAT
CTGAGTCGACGAAATCAATGTCAGAGTTGCAGGTTTAAGAAATGTTTGAG
TGTTGGTATGAGAAAAGAGGcTGTTCAACACGAGCGTGCACCACGTAACA
AAAAGGGTGGTCAAACACCGGACCGCCCAAATGAATTTTCACCTTATCCG
CCACAAATTGTTTACCATCGAGTACCTGTATCAGGCGATGTCGCTGAACT
ACCAGTCACGTGCTCTAATATACCACCCGCAGCTCAAAGAGTACCGCCGA
CGCCTCTACCTACACAACGCCCTAAGCCGCCTCAAGTCTTTGTGAACACA
CCCAAGGAGCTGTACGAAGTGTGTGCTCGCCTGTTATACGAAGCTATCTC
TTGGGCACGAAACATTCCGACTTTTTCTCAATTACCGTTAGATGATCAGG
CTTTACTATTGGAATACAGCTGGAGTGAAATATTTCTACTTAACCTTGCG
CAGCTCAATATTCCTCTTGGTATGGAAACAATGATCAAGCTGACTCAGCA
ATCTAAAGAATATCTGAACGATAAAAGTGATATTAACAAAGACACTTTAA
ACGAATTGGTGCATATACAATCAGTTGTTTTCAAATTGAAAACATTAAAC
ATGTCATCTGCTGAATATTCTTGCGTCAAAGCCATTGTACTCTTCAAACC
AGATCTTCGTCGAATAAAGTCTCGTCAACATATCGAAAACCTTCAAGAAC
AAGCACAATTAAGACTCTTAGATTCTGTTATGGTAAAAGGACCTCGTGCA
AGGTTCGGAAAAATCCTTCTCAAATTATCACTATTGGGTGAAGTTTCCCC
GTCTTTCATTGAGAAATGTTTCTTCAAAGGTGGACTCGAAAATATAAGTG
ACGAATTTTGCAGTAGCTCCACTGAATCTAATTCTAACCAATCAGATATG
ATATCAACACtcaagaaccaatcagaaaagaCTCCTGTTGATAGAAACCA
ATCAGAGGCAATCACGCCAGAAAACAATAAATCAATCAGCCAATCAGAAG
GCGAGAAAGTTAACGGTGACCAATCAAAAGACTTGAATTTCTTTAACCAT
GAAATTAAACAAGAAGTTGAGGATATTGTGCAAGTTGTTGCTTCTGAAAC
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041137XLOC_041137Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065651-proteinTCONS_00065651-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065651-exon-scaffold_441-1491911889:20137..20605TCONS_00065651-exon-scaffold_441-1491911889:20137..20605Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1510915933:20137..20605TCONS_00065651-exon-scaffold_441-1510915933:20137..20605Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1575043694:20137..20605TCONS_00065651-exon-scaffold_441-1575043694:20137..20605Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1491911889:21556..21689TCONS_00065651-exon-scaffold_441-1491911889:21556..21689Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1510915933:21556..21689TCONS_00065651-exon-scaffold_441-1510915933:21556..21689Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1575043694:21556..21689TCONS_00065651-exon-scaffold_441-1575043694:21556..21689Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1491911889:22739..22997TCONS_00065651-exon-scaffold_441-1491911889:22739..22997Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1510915933:22739..22997TCONS_00065651-exon-scaffold_441-1510915933:22739..22997Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1575043694:22739..22997TCONS_00065651-exon-scaffold_441-1575043694:22739..22997Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1491911889:23568..23681TCONS_00065651-exon-scaffold_441-1491911889:23568..23681Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1510915933:23568..23681TCONS_00065651-exon-scaffold_441-1510915933:23568..23681Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1575043694:23568..23681TCONS_00065651-exon-scaffold_441-1575043694:23568..23681Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1491911889:24529..24996TCONS_00065651-exon-scaffold_441-1491911889:24529..24996Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1510915933:24529..24996TCONS_00065651-exon-scaffold_441-1510915933:24529..24996Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1575043694:24529..24996TCONS_00065651-exon-scaffold_441-1575043694:24529..24996Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1491911889:25667..26606TCONS_00065651-exon-scaffold_441-1491911889:25667..26606Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1510915933:25667..26606TCONS_00065651-exon-scaffold_441-1510915933:25667..26606Clytia hemisphaericaexon
TCONS_00065651-exon-scaffold_441-1575043694:25667..26606TCONS_00065651-exon-scaffold_441-1575043694:25667..26606Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_441supercontigscaffold_441:20137..26606 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.6273	4.515	1.82151	1.40198	17.3887	14.2297	12.2053	12.4165	6.88417	5.70371	6.17322	5.7553	6.24709	5.17114	4.52925	6.30498	7.73252	7.60578	4.93315	6.80424	8.48953	9.62336	7.10697	7.47756	5.28145	7.74451	4.60958	4.10565	4.14596	5.16481
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001628Znf_hrmn_rcpt
IPR001723Nuclear_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0008270zinc ion binding
GO:0003707steroid hormone receptor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003707 steroid hormone receptor activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00065651 vs. Swiss-Prot (Human)
Match: NR2E1 (Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens GN=NR2E1 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 7.018e-63
Identity = 138/366 (37.70%), Postives = 198/366 (54.10%), Query Frame = 1 
Query:  649 VPCFVCGDRSSGRHYGVLTCDGCRGFFKRSVRRGVGYHCR--DKGRCVVNLSRRNQCQSCRFKKCLSVGMRKEAVQHERAPRN---------------KKGGQTPDRPNEFSPYPP--QIVYHRVPVSGDVAELPVTCSNIPPAAQXXXXXXXXXXXXXXXXXFVNTPKELYEVC--------ARLLYEAISWARNIPTFSQLPLDDQALLLEYSWSEIFLLNLAQLNIPLGMETMIKLTQQSKEYLNDKSDINKDTLNELVHIQSVVFKLKTLNMSSAEYSCVKAIVLFKP-------DLRRIKSRQHIENLQEQAQLRLLDSVMVKGPR--ARFGKILLKLSLLGEVSPSFIEKCFFKGGLENI 1638
            +PC VCGDRSSG+HYGV  CDGC GFFKRS+RR   Y C+  ++G C V+ + RNQC++CR KKCL V M K+AVQHER PR                ++ G     P+   P P     V    P   ++A +  T     P  Q +     PT +         TP  LYEV         ARLL+ +I WA+++P FS L L DQ +LLE +W E+F+L +AQ  IP+   T++ ++  + +   D   +NK  ++E+  +Q VV + + L + + E++C+K IV FK        +LR  ++   I  LQ++AQL L   +  + P    RFGK+LL L  L  +SPS IE+ FFK  + N+
Sbjct:   14 IPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERGPRTSTIRKQVALYFRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPHGLELAAVSTT-----PERQTLVSLAQPTPKYPHEVN--GTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDN-TDSQKLNK-IISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNV 370
The following BLAST results are available for this feature:
BLAST of TCONS_00065651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NR2E17.018e-6337.70Nuclear receptor subfamily 2 group E member 1 OS=H... [more]
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