TCONS_00065641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065641
Unique NameTCONS_00065641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065641 ID=TCONS_00065641|Name=TCONS_00065641|organism=Clytia hemisphaerica|type=transcript|length=315bp
taaCAACtcgtttatttttctttttttattacgaAATATAAATCTAGGTA
AATAAAAAtgcaaatgaaaataatttagcGAAGATGAATGGGTTCAAGAA
ACTTTAAAGTAAAAATGATGAAAGAAATACTGCCAGTAATAACATATTAC
AAGTGTCAGCATGGAAAATACAAGGTATGAAACGAGGAAGCGTATCATGA
GTTGGATGTATGAGTTGGTGCAGAAAGTGCATATCTGGAATGAATCTGTC
GgatattttgattgttttgtaaATGTCATTTATCATCTAAAACAGCGCAT
CACCATCCAGATCNC
Run BLAST on NCBI

transcript from alignment at scaffold_440:458869..459183

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065641 ID=TCONS_00065641|Name=TCONS_00065641|organism=Clytia hemisphaerica|type=transcript|length=315bp|location=Sequence derived from alignment at scaffold_440:458869..459183 (Clytia hemisphaerica)
GNGATCTGGATGGTGATGCGCTGTTTTAGATGATAAATGACATttacaaa
acaatcaaaatatcCGACAGATTCATTCCAGATATGCACTTTCTGCACCA
ACTCATACATCCAACTCATGATACGCTTCCTCGTTTCATACCTTGTATTT
TCCATGCTGACACTTGTAATATGTTATTACTGGCAGTATTTCTTTCATCA
TTTTTACTTTAAAGTTTCTTGAACCCATTCATCTTCgctaaattattttc
atttgcaTTTTTATTTACCTAGATTTATATTtcgtaataaaaaaagaaaa
ataaacgaGTTGtta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041129XLOC_041129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065641-exon-scaffold_440-1491911889:458869..459183TCONS_00065641-exon-scaffold_440-1491911889:458869..459183Clytia hemisphaericaexon
TCONS_00065641-exon-scaffold_440-1510915933:458869..459183TCONS_00065641-exon-scaffold_440-1510915933:458869..459183Clytia hemisphaericaexon
TCONS_00065641-exon-scaffold_440-1575043694:458869..459183TCONS_00065641-exon-scaffold_440-1575043694:458869..459183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:458869..459183 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
264.683	283.885	320.525	326.187	4.51251	7.13169	94.6449	101.493	254.342	280.815	223.409	120.118	84.5666	91.5211	212.238	254.475	48.4809	35.0157	140.148	101.988	13.9117	14.2025	77.5006	60.3438	6.46676	16.0317	10.0942	7.34509	33.0546	29.515
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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