TCONS_00065636 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065636
Unique NameTCONS_00065636
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065636 ID=TCONS_00065636|Name=TCONS_00065636|organism=Clytia hemisphaerica|type=transcript|length=634bp
GTAAAACTCAAATCTTCTTGAAGGAAATCTAGGATAACTGAACCCTTTTA
GTTCATTCTATCCTCTATCGGTTAAAATCTTCCCAACCAAAGTAAACAAA
ATTAAATCTTAGCTAAGCTACAGCAAAAACTAACAAAAGGCTGTCAGGAA
GCTCAACCTAGATTTTTGCTTCTGTGTTTGAAGACTTATCGTCCATcaaa
atgtttatttatttgatgaattttagtCAGTGGGTGAATTTTGGACATCC
TCCATCAATTATGCACAAATTTAAACCAAGTTTGAGCGTTTTTAAATGCA
GCAGAGTTtgaaaaatggcggattttttcAAAGTGGTTTACTCCAAAGAA
AAGTGTGAAATTTAGATATTATTCAACCTTTTTGTCCCTGTAAGGGTCGG
TTGTCGGAGCTCAAGATTACTCGACTGTATCGACATCATCAAATTAGCTT
AAATCTACTTCAAACGGGTCGAAAAAGGGTTTTTCGACtttgtcaaaaaa
atatattagaaacTTCATGTCCGACTAATATTTTCATTCTATAACATGAC
AAATAATCAGCGCCTGTCAGACAAAATGTCAACATCTAGTTGTTAAAGAC
CTTTGTATTGAAAAACAATCCCGCGCTGCTATAG
Run BLAST on NCBI

transcript from alignment at scaffold_440:271154..271787

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065636 ID=TCONS_00065636|Name=TCONS_00065636|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at scaffold_440:271154..271787 (Clytia hemisphaerica)
CTATAGCAGCGCGGGATTGTTTTTCAATACAAAGGTCTTTAACAACTAGA
TGTTGACATTTTGTCTGACAGGCGCTGATTATTTGTCATGTTATAGAATG
AAAATATTAGTCGGACATGAAgtttctaatatatttttttgacaaaGTCG
AAAAACCCTTTTTCGACCCGTTTGAAGTAGATTTAAGCTAATTTGATGAT
GTCGATACAGTCGAGTAATCTTGAGCTCCGACAACCGACCCTTACAGGGA
CAAAAAGGTTGAATAATATCTAAATTTCACACTTTTCTTTGGAGTAAACC
ACTTTgaaaaaatccgccatttttcaAACTCTGCTGCATTTAAAAACGCT
CAAACTTGGTTTAAATTTGTGCATAATTGATGGAGGATGTCCAAAATTCA
CCCACTGactaaaattcatcaaataaataaacattttgATGGACGATAAG
TCTTCAAACACAGAAGCAAAAATCTAGGTTGAGCTTCCTGACAGCCTTTT
GTTAGTTTTTGCTGTAGCTTAGCTAAGATTTAATTTTGTTTACTTTGGTT
GGGAAGATTTTAACCGATAGAGGATAGAATGAACTAAAAGGGTTCAGTTA
TCCTAGATTTCCTTCAAGAAGATTTGAGTTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041124XLOC_041124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065636-exon-scaffold_440-1491911889:271154..271787TCONS_00065636-exon-scaffold_440-1491911889:271154..271787Clytia hemisphaericaexon
TCONS_00065636-exon-scaffold_440-1510915933:271154..271787TCONS_00065636-exon-scaffold_440-1510915933:271154..271787Clytia hemisphaericaexon
TCONS_00065636-exon-scaffold_440-1575043694:271154..271787TCONS_00065636-exon-scaffold_440-1575043694:271154..271787Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:271154..271787 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.083477	0.24421	0	0	0	0.0889571	0.321969	0.301423	0.211033	0.174266	0.0845734	0.0555952	0	0	0	0.152606	0	0.256922	0	0.0928579	0.484262	0.354309	0	0	0.0896256	0	0.343391	0.366476	1.11184	1.88798
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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