TCONS_00065633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065633
Unique NameTCONS_00065633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065633 ID=TCONS_00065633|Name=TCONS_00065633|organism=Clytia hemisphaerica|type=transcript|length=479bp
CGGAAACTTTCGTGAAAGTTGAAAACATCAGTTAATTTTACAAAATGGCG
GCTTCAAATACACGTACTGTCGAATCTTGCTTGGATGAGATTTTTGCAGA
AACTAACATAAAGCTGAAACCAAAACAGATTGaagcaatcaaaaatatat
acactgGCAAAGACACGTTATGTATTTTACCGACTGCATTTGGGAAATCT
ATGATCTATCAATGCCTACCCAAGTTGTTTTCAATGATGGAGTCTTCTCA
ATCTCAGCCTGTTGTTGTTGTCATTTCACCCCTTGCCGCTCTGATGCAGA
ATCAGGTAGAGGAAGCAAACAAATTGAAGTATCTTGGACTCAAATCTTCT
ACTCTCGATATTACAATGATGAAGGAGATAAAATCTGGCTCTGGTAAATT
CAATCTTCTTTTTGGAACACCAGAATCGTGGATCTCAGACAAATGGCGAG
AAGTTTTGGGCTCAACTTTCATGTTGGAC
Run BLAST on NCBI

protein sequence of TCONS_00065633-protein

>TCONS_00065633-protein ID=TCONS_00065633-protein|Name=TCONS_00065633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MAASNTRTVESCLDEIFAETNIKLKPKQIEAIKNIYTGKDTLCILPTAFG
KSMIYQCLPKLFSMMESSQSQPVVVVISPLAALMQNQVEEANKLKYLGLK
SSTLDITMMKEIKSGSGKFNLLFGTPESWISDKWREVLGSTFMLD
Run BLAST on NCBI

transcript from alignment at scaffold_440:180002..180480

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065633 ID=TCONS_00065633|Name=TCONS_00065633|organism=Clytia hemisphaerica|type=transcript|length=479bp|location=Sequence derived from alignment at scaffold_440:180002..180480 (Clytia hemisphaerica)
GTCCAACATGAAAGTTGAGCCCAAAACTTCTCGCCATTTGTCTGAGATCC
ACGATTCTGGTGTTCCAAAAAGAAGATTGAATTTACCAGAGCCAGATTTT
ATCTCCTTCATCATTGTAATATCGAGAGTAGAAGATTTGAGTCCAAGATA
CTTCAATTTGTTTGCTTCCTCTACCTGATTCTGCATCAGAGCGGCAAGGG
GTGAAATGACAACAACAACAGGCTGAGATTGAGAAGACTCCATCATTGAA
AACAACTTGGGTAGGCATTGATAGATCATAGATTTCCCAAATGCAGTCGG
TAAAATACATAACGTGTCTTTGCcagtgtatatatttttgattgcttCAA
TCTGTTTTGGTTTCAGCTTTATGTTAGTTTCTGCAAAAATCTCATCCAAG
CAAGATTCGACAGTACGTGTATTTGAAGCCGCCATTTTGTAAAATTAACT
GATGTTTTCAACTTTCACGAAAGTTTCCG

Coding sequence (CDS) from alignment at scaffold_440:180002..180480

>TCONS_00065633 ID=TCONS_00065633|Name=TCONS_00065633|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_440:180002..180480 (Clytia hemisphaerica)
GTCCAACATGAAAGTTGAGCCCAAAACTTCTCGCCATTTGTCTGAGATCC
ACGATTCTGGTGTTCCAAAAAGAAGATTGAATTTACCAGAGCCAGATTTT
ATCTCCTTCATCATTGTAATATCGAGAGTAGAAGATTTGAGTCCAAGATA
CTTCAATTTGTTTGCTTCCTCTACCTGATTCTGCATCAGAGCGGCAAGGG
GTGAAATGACAACAACAACAGGCTGAGATTGAGAAGACTCCATCATTGAA
AACAACTTGGGTAGGCATTGATAGATCATAGATTTCCCAAATGCAGTCGG
TAAAATACATAACGTGTCTTTGCcagtgtatatatttttgattgcttCAA
TCTGTTTTGGTTTCAGCTTTATGTTAGTTTCTGCAAAAATCTCATCCAAG
CAAGATTCGACAGTACGTGTATTTGAAGCCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041121XLOC_041121Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065633-exon-scaffold_440-1491911889:180002..180480TCONS_00065633-exon-scaffold_440-1491911889:180002..180480Clytia hemisphaericaexon
TCONS_00065633-exon-scaffold_440-1510915933:180002..180480TCONS_00065633-exon-scaffold_440-1510915933:180002..180480Clytia hemisphaericaexon
TCONS_00065633-exon-scaffold_440-1575043694:180002..180480TCONS_00065633-exon-scaffold_440-1575043694:180002..180480Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065633-proteinTCONS_00065633-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:180002..180480 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.25627	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top