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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065631 ID=TCONS_00065631|Name=TCONS_00065631|organism=Clytia hemisphaerica|type=transcript|length=1120bp
GCAGTGGCTAGGGCCAGACCTAGGGTCTCGCTCTAGAATGGAGAAGTGTG
GCGCCTCCTTCCCTCCACTAGCCTGGGTGTTCGCCTTGAGCAAGCGATAC
TCCACCCACGCTCCCCTTGTCAGGGTCACGACACCAACTGGCAATGATGT
TCTGACAACTCGTCATCTTCATTGGCAACAGCAATGTGGCTTGTCAACTC
GGCATCCTCGTTGGTACCCTGGCGGATATCAGAATCAACTCGGTCCTATA
TCTGGCATCTATTGCAACAGACTACCTTCATTCGGCTGTCCTAGCTTGCT
TTGCCGCCGTGTCCATGGAGTTTTCTGCCAAGGAAAGTTGCTCTTGTCCC
AAGCAGCTTCGACATACATTGGGACAGCCTTACAGTTTATATATGATTAG
AACTTTGTATAGAGAGAGATACCACTACTGCATCCGAGAAAACCGATGAA
TACACGAAATCCTTTCAACCTCACACTTGGTGCGTGGAATGTACGCACGA
CAAACGACACTACTGATTCAATCAGACCCGAACGAGCAACTGCAATCATA
ACACAAGAACTCGCTAAAGCTAACATTGATATATGTGCACTGAGCGAAGT
TAGACGAGAAGGACAAGGAAACCTAGTCGAAAGGGATTATACAATATACT
GGAGCGGAGGCACTAAGAAGGAAGCCGGTGTTGGATTTGCTATTTCtaac
aaattatcttccttcGAAATGGCCACAGTACCGATAAGCGATAGATTGAT
GGTGTTAAGAATACGTCTCCATTCTGGAAAATATCTTAAACTTGTCAGTG
TATACGCCCCAACTATGCAACGCACACAGGAAGAGAAAGAACTCTTTTAC
CAATCTCTCACGGATGTTTTACGTTCTGACAGAGACGACCTTTATCTTGT
TCTCGGTGACTTCAACGCAAGAGTGGGATCAGATTGGCAACTTTGGCCAA
ACATCCTCGGGAAGCATGGTATCGGAAAAATGAACTCAAACGGACTTATG
CTACTCGATTTTTGCACCCAAAACTCATTCACTGTTATGGGTTCTGTTTT
CCAACTTTCGAATAAATTTAAAACCTCCTGGCAACATTTACGGTCAAAAC
ATTGGCATCAGATTGATCAC Run BLAST on NCBI protein sequence of TCONS_00065631-protein >TCONS_00065631-protein ID=TCONS_00065631-protein|Name=TCONS_00065631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MNTRNPFNLTLGAWNVRTTNDTTDSIRPERATAIITQELAKANIDICALS
EVRREGQGNLVERDYTIYWSGGTKKEAGVGFAISNKLSSFEMATVPISDR
LMVLRIRLHSGKYLKLVSVYAPTMQRTQEEKELFYQSLTDVLRSDRDDLY
LVLGDFNARVGSDWQLWPNILGKHGIGKMNSNGLMLLDFCTQNSFTVMGS
VFQLSNKFKTSWQHLRSKHWHQIDH Run BLAST on NCBI transcript from alignment at scaffold_440:169969..171088 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065631 ID=TCONS_00065631|Name=TCONS_00065631|organism=Clytia hemisphaerica|type=transcript|length=1120bp|location=Sequence derived from alignment at scaffold_440:169969..171088 (Clytia hemisphaerica)
GTGATCAATCTGATGCCAATGTTTTGACCGTAAATGTTGCCAGGAGGTTT
TAAATTTATTCGAAAGTTGGAAAACAGAACCCATAACAGTGAATGAGTTT
TGGGTGCAAAAATCGAGTAGCATAAGTCCGTTTGAGTTCATTTTTCCGAT
ACCATGCTTCCCGAGGATGTTTGGCCAAAGTTGCCAATCTGATCCCACTC
TTGCGTTGAAGTCACCGAGAACAAGATAAAGGTCGTCTCTGTCAGAACGT
AAAACATCCGTGAGAGATTGGTAAAAGAGTTCTTTCTCTTCCTGTGTGCG
TTGCATAGTTGGGGCGTATACACTGACAAGTTTAAGATATTTTCCAGAAT
GGAGACGTATTCTTAACACCATCAATCTATCGCTTATCGGTACTGTGGCC
ATTTCgaaggaagataatttgttaGAAATAGCAAATCCAACACCGGCTTC
CTTCTTAGTGCCTCCGCTCCAGTATATTGTATAATCCCTTTCGACTAGGT
TTCCTTGTCCTTCTCGTCTAACTTCGCTCAGTGCACATATATCAATGTTA
GCTTTAGCGAGTTCTTGTGTTATGATTGCAGTTGCTCGTTCGGGTCTGAT
TGAATCAGTAGTGTCGTTTGTCGTGCGTACATTCCACGCACCAAGTGTGA
GGTTGAAAGGATTTCGTGTATTCATCGGTTTTCTCGGATGCAGTAGTGGT
ATCTCTCTCTATACAAAGTTCTAATCATATATAAACTGTAAGGCTGTCCC
AATGTATGTCGAAGCTGCTTGGGACAAGAGCAACTTTCCTTGGCAGAAAA
CTCCATGGACACGGCGGCAAAGCAAGCTAGGACAGCCGAATGAAGGTAGT
CTGTTGCAATAGATGCCAGATATAGGACCGAGTTGATTCTGATATCCGCC
AGGGTACCAACGAGGATGCCGAGTTGACAAGCCACATTGCTGTTGCCAAT
GAAGATGACGAGTTGTCAGAACATCATTGCCAGTTGGTGTCGTGACCCTG
ACAAGGGGAGCGTGGGTGGAGTATCGCTTGCTCAAGGCGAACACCCAGGC
TAGTGGAGGGAAGGAGGCGCCACACTTCTCCATTCTAGAGCGAGACCCTA
GGTCTGGCCCTAGCCACTGC Coding sequence (CDS) from alignment at scaffold_440:169969..171088 >TCONS_00065631 ID=TCONS_00065631|Name=TCONS_00065631|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_440:169969..171088 (Clytia hemisphaerica)
GTGATCAATCTGATGCCAATGTTTTGACCGTAAATGTTGCCAGGAGGTTT
TAAATTTATTCGAAAGTTGGAAAACAGAACCCATAACAGTGAATGAGTTT
TGGGTGCAAAAATCGAGTAGCATAAGTCCGTTTGAGTTCATTTTTCCGAT
ACCATGCTTCCCGAGGATGTTTGGCCAAAGTTGCCAATCTGATCCCACTC
TTGCGTTGAAGTCACCGAGAACAAGATAAAGGTCGTCTCTGTCAGAACGT
AAAACATCCGTGAGAGATTGGTAAAAGAGTTCTTTCTCTTCCTGTGTGCG
TTGCATAGTTGGGGCGTATACACTGACAAGTTTAAGATATTTTCCAGAAT
GGAGACGTATTCTTAACACCATCAATCTATCGCTTATCGGTACTGTGGCC
ATTTCgaaggaagataatttgttaGAAATAGCAAATCCAACACCGGCTTC
CTTCTTAGTGCCTCCGCTCCAGTATATTGTATAATCCCTTTCGACTAGGT
TTCCTTGTCCTTCTCGTCTAACTTCGCTCAGTGCACATATATCAATGTTA
GCTTTAGCGAGTTCTTGTGTTATGATTGCAGTTGCTCGTTCGGGTCTGAT
TGAATCAGTAGTGTCGTTTGTCGTGCGTACATTCCACGCACCAAGTGTGA
GGTTGAAAGGATTTCGTGTATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065631-exon-scaffold_440-1491911889:169969..171088 | TCONS_00065631-exon-scaffold_440-1491911889:169969..171088 | Clytia hemisphaerica | exon |
| TCONS_00065631-exon-scaffold_440-1510915933:169969..171088 | TCONS_00065631-exon-scaffold_440-1510915933:169969..171088 | Clytia hemisphaerica | exon |
| TCONS_00065631-exon-scaffold_440-1575043694:169969..171088 | TCONS_00065631-exon-scaffold_440-1575043694:169969..171088 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_440 | supercontig | scaffold_440:169969..171088 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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