TCONS_00065627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065627
Unique NameTCONS_00065627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065627 ID=TCONS_00065627|Name=TCONS_00065627|organism=Clytia hemisphaerica|type=transcript|length=357bp
CTtaaatttaaatgttttttctgttGATCCAAAACAGATGTTTTGTGATG
TAAGGCAAGTTTATACATACTTCGCACCACCCTTATTGATTTGGGATCCT
GTAACCTTGGCTCGGAAAAATAAACCTGTCATTTGTGAGAAGCATGCTTC
AGAGGTGGACAGCACAAACCGTTGGCTGGACTCTAATACTGATAATTCTC
GTCGGCCAAGAATTCTTATTGATAACTCTGGTCCGAAGTTGTTAATAGCA
AGGGTATACAAGTGTAGAGTAGGAGATCATGAAATTAGAACAACAAATGA
GAGCTTTTTAAAGCAATGTGGGACTAATGCTAATGACATAATTGTCACAT
ACAAGGG
Run BLAST on NCBI

protein sequence of TCONS_00065627-protein

>TCONS_00065627-protein ID=TCONS_00065627-protein|Name=TCONS_00065627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
LNLNVFSVDPKQMFCDVRQVYTYFAPPLLIWDPVTLARKNKPVICEKHAS
EVDSTNRWLDSNTDNSRRPRILIDNSGPKLLIARVYKCRVGDHEIRTTNE
SFLKQCGTNANDIIVTYK
Run BLAST on NCBI

transcript from alignment at scaffold_440:117354..117710

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065627 ID=TCONS_00065627|Name=TCONS_00065627|organism=Clytia hemisphaerica|type=transcript|length=357bp|location=Sequence derived from alignment at scaffold_440:117354..117710 (Clytia hemisphaerica)
CCCTTGTATGTGACAATTATGTCATTAGCATTAGTCCCACATTGCTTTAA
AAAGCTCTCATTTGTTGTTCTAATTTCATGATCTCCTACTCTACACTTGT
ATACCCTTGCTATTAACAACTTCGGACCAGAGTTATCAATAAGAATTCTT
GGCCGACGAGAATTATCAGTATTAGAGTCCAGCCAACGGTTTGTGCTGTC
CACCTCTGAAGCATGCTTCTCACAAATGACAGGTTTATTTTTCCGAGCCA
AGGTTACAGGATCCCAAATCAATAAGGGTGGTGCGAAGTATGTATAAACT
TGCCTTACATCACAAAACATCTGTTTTGGATCaacagaaaaaacatttaa
atttaAG

Coding sequence (CDS) from alignment at scaffold_440:117354..117710

>TCONS_00065627 ID=TCONS_00065627|Name=TCONS_00065627|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_440:117354..117710 (Clytia hemisphaerica)
CTTGTATGTGACAATTATGTCATTAGCATTAGTCCCACATTGCTTTAAAA
AGCTCTCATTTGTTGTTCTAATTTCATGATCTCCTACTCTACACTTGTAT
ACCCTTGCTATTAACAACTTCGGACCAGAGTTATCAATAAGAATTCTTGG
CCGACGAGAATTATCAGTATTAGAGTCCAGCCAACGGTTTGTGCTGTCCA
CCTCTGAAGCATGCTTCTCACAAATGACAGGTTTATTTTTCCGAGCCAAG
GTTACAGGATCCCAAATCAATAAGGGTGGTGCGAAGTATGTATAAACTTG
CCTTACATCACAAAACATCTGTTTTGGATCaacagaaaaaacatttaaat
ttaA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041115XLOC_041115Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065627-proteinTCONS_00065627-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065627-exon-scaffold_440-1491911889:117354..117710TCONS_00065627-exon-scaffold_440-1491911889:117354..117710Clytia hemisphaericaexon
TCONS_00065627-exon-scaffold_440-1510915933:117354..117710TCONS_00065627-exon-scaffold_440-1510915933:117354..117710Clytia hemisphaericaexon
TCONS_00065627-exon-scaffold_440-1575043694:117354..117710TCONS_00065627-exon-scaffold_440-1575043694:117354..117710Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:117354..117710 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.958857	0.701278	0.542834	0.265539	1.29307	0.510902	1.84914	0.577049	1.41402	1.50128	1.9429	0.478945	0	0.496698	1.08894	0.876451	0.359905	0.553337	0.764465	1.06661	0.695308	2.03488	0.824555	0.74964	1.02948	0.229697	0	0.350793	0.532129	0.542155
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top