TCONS_00065625 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065625
Unique NameTCONS_00065625
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065625 ID=TCONS_00065625|Name=TCONS_00065625|organism=Clytia hemisphaerica|type=transcript|length=281bp
TGCTGGTTTTAAGTGAATTTGGTTTCAACAAACTTTGCTTTGCTATTCTT
TTGTTATTATTTGCTAACATTTGTGTTGGTTTCtttgatttttaacaaac
ttagctttactgttcttttgttatacatttttttgacatttgtgcTTAAT
CTAAGTTAAGATTTGGCCAATCCCCATTTGTGCTGGTCACATTGGAACTA
CGCTCTtaggggccattcaaaaagtacgttcgtccaTTTTCGCCTATTTT
TAGACCACCTCCTCCCCTCTGTTCGTCGGCG
Run BLAST on NCBI

transcript from alignment at scaffold_440:112573..112853

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065625 ID=TCONS_00065625|Name=TCONS_00065625|organism=Clytia hemisphaerica|type=transcript|length=281bp|location=Sequence derived from alignment at scaffold_440:112573..112853 (Clytia hemisphaerica)
CGCCGACGAACAGAGGGGAGGAGGTGGTCTAAAAATAGGCGAAAAtggac
gaacgtactttttgaatggcccctaAGAGCGTAGTTCCAATGTGACCAGC
ACAAATGGGGATTGGCCAAATCTTAACTTAGATTAAgcacaaatgtcaaa
aaaatgtataacaaaagaacagtaaagctaagtttgttaaaaatcaaaGA
AACCAACACAAATGTTAGCAAATAATAACAAAAGAATAGCAAAGCAAAGT
TTGTTGAAACCAAATTCACTTAAAACCAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041113XLOC_041113Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065625-exon-scaffold_440-1491911889:112573..112853TCONS_00065625-exon-scaffold_440-1491911889:112573..112853Clytia hemisphaericaexon
TCONS_00065625-exon-scaffold_440-1510915933:112573..112853TCONS_00065625-exon-scaffold_440-1510915933:112573..112853Clytia hemisphaericaexon
TCONS_00065625-exon-scaffold_440-1575043694:112573..112853TCONS_00065625-exon-scaffold_440-1575043694:112573..112853Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:112573..112853 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.540537	3.29026	0.520002	0	0.587327	0.411201	0	1.97751	0.324984	0.973597	1.01109	0.554169	0.594708	0	0.750924	0.518721	0	0	0	0	0	0	1.87031	0	0	0	0.551811
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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