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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065622 ID=TCONS_00065622|Name=TCONS_00065622|organism=Clytia hemisphaerica|type=transcript|length=2095bp
GTGCCATAAGAAAATCTCTTAATGAACGTTATAAACTGTTTGTTAAAGCA
AAAAATACCGGTAAAGGATCAGCTGAATGGAAACAGTACAACAAGAAAAG
GAACTCTTGCACTAATTTGATCCGCATAGCAAAAGCTACTTattggaaaa
acaaatttgacaAGTCTAATAATAGCAAATCATTCTGGAAAACTGTCAAT
GAATACAACGGTGGAAAGAATACTTCAAAAATAGGACCGTTGCTTGAAAA
CGAGAATCTTATAActgataattttgaaaaatctcaaacaatgaataatt
tttttgctaatgtaggagagaaattggcaaaaaatgtTGAATCAGTTAAT
GACAACTCAAATGTATATATGATCACCCCCACATTATCAGAGATTGCGCC
AGAAATCAATGAattcaaaaagtgtttttcctcAGCTgttaaaaatggaa
aatcttGTGGCCCGGATAATATTTCTTCAAAGGATTTGAAATTACATGAA
TCAACATCAGTTTCAAgccttttcaaagttttttgtaaaagtattGAGCA
TGGATCCTTTACATCTACTTGGAAAACTGCAAGGGTATCCTGTTTGTATA
AAAACAAGGGATCAAAGAAAGATTGTGGTAATTATCCTCCTATCTCACTG
TTATCTATACCAAGTAAAGTCGTTGAGAAATTCATTTGCAATGCTCTAGT
TGGTCATTTGGAATCATTCAATCTTTTCAGCAATTTTCAATGGGGTTTTC
GCAAACAGAGCTCTTGTGAAGATCTTCTTCTTCATATGACAGAGAAATGG
CTGAAATCTATTGATTCGGGaaaagttgttgttgttttatttattgactt
tcaaaaagcattcgaTAGTGTAGCTCATCCTATTTTGCTTGATAAACTGG
CCGGTTGTGGAATATCTGGATCATTTCTTGAGTACATAAAATCGTATTTA
AATGATCGCTCTCAGTATACAATAGTCAACGGTATTTCATCAGATAAAGC
AAATGTTCGATATGGTGTACCACAGGGATCCATTCTAGGTCCTAACTGTT
TCTCATCGTACATCAATGATATGCCAAGTGAAGTCAATCCTATTGATGGA
GAGCTTGATATGTTTGCAGACGACTCAACTGTTTTCGAGGAGGGTGACAC
TGTTGATTTAACAATGGTAAAAATGGCTGTTACTGCCACAAAAGTTGAAG
TGTATTCAAAGAGAAATTCTCTTACGATACATCCAGGGAAATGCaagatt
ctttttatttcaaagaagCCTTTTATTGGTCCTTTACAGGCTGTAATACT
AAATGATAAAGTTGTTGAATGCGTCCCCAATACAAAATGTCTAGGCGTGA
CAATAGACCAGCATTTAAATTGGGAAGCACATATATCTGAATTGTGTCAA
CAATTTTACGCAAAAGTTAAGAAACTCTATACTATGAGAGCCATGTCGAA
AATTACCTTATTGACAATTTATTTCCAAGGTGTTCTGCCGTCTGTCCTCT
ATGCAATACTTATTTGGGGTAGCTCAAATCATCTTCAAGACTTACAAAAT
ATTCACATGAAAGCTGCTCGTTTTATAATGCGTATTAAAAAGTCTGTACC
CGATTATGAAGTCATGAAAAAGGCAGAGTGGAAACCAATTGAGTATTATT
ACAAGCGCTCAATAGCATCAAAGGTATTCAAAGTTTTCTATAATCTGTCA
CCAAAACCACTTTCTTCACTGATTTCAAGAAGTGACAAACGCAAAAACCG
GAATTCATTTAAGCTTGAATTGCCCAGATATGATTATGTTGGTTACAAGA
AATCATTTTGCTATCGAGCTACTAACGTTTGGAATGTTTTACCAGTCGAA
CTAAGGCAAAAGACTTACAACtaatttaaaaaaggtttgaCTGAAAAAGA
ACTTGATAAAATCACCTTTGGCACCTTAGCCACTGGTAGAGCCTTACAAA
ATGATTTTATATATTACTAGAATCATCAAATTATTCTAACTCTTCtagat
tatttatttatttctctTTGCCTCGGTGCAGTTGTCAAAATCCAAGTTCT
GTAGGTTGTGTCTCAAGTTTTGCCAAATTAATTCTATCCTAATAC Run BLAST on NCBI protein sequence of TCONS_00065622-protein >TCONS_00065622-protein ID=TCONS_00065622-protein|Name=TCONS_00065622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp
AIRKSLNERYKLFVKAKNTGKGSAEWKQYNKKRNSCTNLIRIAKATYWKN
KFDKSNNSKSFWKTVNEYNGGKNTSKIGPLLENENLITDNFEKSQTMNNF
FANVGEKLAKNVESVNDNSNVYMITPTLSEIAPEINEFKKCFSSAVKNGK
SCGPDNISSKDLKLHESTSVSSLFKVFCKSIEHGSFTSTWKTARVSCLYK
NKGSKKDCGNYPPISLLSIPSKVVEKFICNALVGHLESFNLFSNFQWGFR
KQSSCEDLLLHMTEKWLKSIDSGKVVVVLFIDFQKAFDSVAHPILLDKLA
GCGISGSFLEYIKSYLNDRSQYTIVNGISSDKANVRYGVPQGSILGPNCF
SSYINDMPSEVNPIDGELDMFADDSTVFEEGDTVDLTMVKMAVTATKVEV
YSKRNSLTIHPGKCKILFISKKPFIGPLQAVILNDKVVECVPNTKCLGVT
IDQHLNWEAHISELCQQFYAKVKKLYTMRAMSKITLLTIYFQGVLPSVLY
AILIWGSSNHLQDLQNIHMKAARFIMRIKKSVPDYEVMKKAEWKPIEYYY
KRSIASKVFKVFYNLSPKPLSSLISRSDKRKNRNSFKLELPRYDYVGYKK
SFCYRATNVWNVLPVELRQKTYN Run BLAST on NCBI transcript from alignment at scaffold_440:53717..55811 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065622 ID=TCONS_00065622|Name=TCONS_00065622|organism=Clytia hemisphaerica|type=transcript|length=2095bp|location=Sequence derived from alignment at scaffold_440:53717..55811 (Clytia hemisphaerica)
GTATTAGGATAGAATTAATTTGGCAAAACTTGAGACACAACCTACAGAAC
TTGGATTTTGACAACTGCACCGAGGCAAagagaaataaataaataatcta
GAAGAGTTAGAATAATTTGATGATTCTAGTAATATATAAAATCATTTTGT
AAGGCTCTACCAGTGGCTAAGGTGCCAAAGGTGATTTTATCAAGTTCTTT
TTCAGtcaaaccttttttaaattaGTTGTAAGTCTTTTGCCTTAGTTCGA
CTGGTAAAACATTCCAAACGTTAGTAGCTCGATAGCAAAATGATTTCTTG
TAACCAACATAATCATATCTGGGCAATTCAAGCTTAAATGAATTCCGGTT
TTTGCGTTTGTCACTTCTTGAAATCAGTGAAGAAAGTGGTTTTGGTGACA
GATTATAGAAAACTTTGAATACCTTTGATGCTATTGAGCGCTTGTAATAA
TACTCAATTGGTTTCCACTCTGCCTTTTTCATGACTTCATAATCGGGTAC
AGACTTTTTAATACGCATTATAAAACGAGCAGCTTTCATGTGAATATTTT
GTAAGTCTTGAAGATGATTTGAGCTACCCCAAATAAGTATTGCATAGAGG
ACAGACGGCAGAACACCTTGGAAATAAATTGTCAATAAGGTAATTTTCGA
CATGGCTCTCATAGTATAGAGTTTCTTAACTTTTGCGTAAAATTGTTGAC
ACAATTCAGATATATGTGCTTCCCAATTTAAATGCTGGTCTATTGTCACG
CCTAGACATTTTGTATTGGGGACGCATTCAACAACTTTATCATTTAGTAT
TACAGCCTGTAAAGGACCAATAAAAGGcttctttgaaataaaaagaatct
tGCATTTCCCTGGATGTATCGTAAGAGAATTTCTCTTTGAATACACTTCA
ACTTTTGTGGCAGTAACAGCCATTTTTACCATTGTTAAATCAACAGTGTC
ACCCTCCTCGAAAACAGTTGAGTCGTCTGCAAACATATCAAGCTCTCCAT
CAATAGGATTGACTTCACTTGGCATATCATTGATGTACGATGAGAAACAG
TTAGGACCTAGAATGGATCCCTGTGGTACACCATATCGAACATTTGCTTT
ATCTGATGAAATACCGTTGACTATTGTATACTGAGAGCGATCATTTAAAT
ACGATTTTATGTACTCAAGAAATGATCCAGATATTCCACAACCGGCCAGT
TTATCAAGCAAAATAGGATGAGCTACACTAtcgaatgctttttgaaagtc
aataaataaaacaacaacaacttttCCCGAATCAATAGATTTCAGCCATT
TCTCTGTCATATGAAGAAGAAGATCTTCACAAGAGCTCTGTTTGCGAAAA
CCCCATTGAAAATTGCTGAAAAGATTGAATGATTCCAAATGACCAACTAG
AGCATTGCAAATGAATTTCTCAACGACTTTACTTGGTATAGATAACAGTG
AGATAGGAGGATAATTACCACAATCTTTCTTTGATCCCTTGTTTTTATAC
AAACAGGATACCCTTGCAGTTTTCCAAGTAGATGTAAAGGATCCATGCTC
aatacttttacaaaaaactttgaaaaggcTTGAAACTGATGTTGATTCAT
GTAATTTCAAATCCTTTGAAGAAATATTATCCGGGCCACaagattttcca
tttttaacAGCTgaggaaaaacactttttgaatTCATTGATTTCTGGCGC
AATCTCTGATAATGTGGGGGTGATCATATATACATTTGAGTTGTCATTAA
CTGATTCAacattttttgccaatttctctcctacattagcaaaaaaatta
ttcattgtttgagatttttcaaaattatcagTTATAAGATTCTCGTTTTC
AAGCAACGGTCCTATTTTTGAAGTATTCTTTCCACCGTTGTATTCATTGA
CAGTTTTCCAGAATGATTTGCTATTATTAGACTtgtcaaatttgtttttc
caatAAGTAGCTTTTGCTATGCGGATCAAATTAGTGCAAGAGTTCCTTTT
CTTGTTGTACTGTTTCCATTCAGCTGATCCTTTACCGGTATTTTTTGCTT
TAACAAACAGTTTATAACGTTCATTAAGAGATTTTCTTATGGCAC Coding sequence (CDS) from alignment at scaffold_440:53717..55811 >TCONS_00065622 ID=TCONS_00065622|Name=TCONS_00065622|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_440:53717..55811 (Clytia hemisphaerica)
ttaGTTGTAAGTCTTTTGCCTTAGTTCGACTGGTAAAACATTCCAAACGT
TAGTAGCTCGATAGCAAAATGATTTCTTGTAACCAACATAATCATATCTG
GGCAATTCAAGCTTAAATGAATTCCGGTTTTTGCGTTTGTCACTTCTTGA
AATCAGTGAAGAAAGTGGTTTTGGTGACAGATTATAGAAAACTTTGAATA
CCTTTGATGCTATTGAGCGCTTGTAATAATACTCAATTGGTTTCCACTCT
GCCTTTTTCATGACTTCATAATCGGGTACAGACTTTTTAATACGCATTAT
AAAACGAGCAGCTTTCATGTGAATATTTTGTAAGTCTTGAAGATGATTTG
AGCTACCCCAAATAAGTATTGCATAGAGGACAGACGGCAGAACACCTTGG
AAATAAATTGTCAATAAGGTAATTTTCGACATGGCTCTCATAGTATAGAG
TTTCTTAACTTTTGCGTAAAATTGTTGACACAATTCAGATATATGTGCTT
CCCAATTTAAATGCTGGTCTATTGTCACGCCTAGACATTTTGTATTGGGG
ACGCATTCAACAACTTTATCATTTAGTATTACAGCCTGTAAAGGACCAAT
AAAAGGcttctttgaaataaaaagaatcttGCATTTCCCTGGATGTATCG
TAAGAGAATTTCTCTTTGAATACACTTCAACTTTTGTGGCAGTAACAGCC
ATTTTTACCATTGTTAAATCAACAGTGTCACCCTCCTCGAAAACAGTTGA
GTCGTCTGCAAACATATCAAGCTCTCCATCAATAGGATTGACTTCACTTG
GCATATCATTGATGTACGATGAGAAACAGTTAGGACCTAGAATGGATCCC
TGTGGTACACCATATCGAACATTTGCTTTATCTGATGAAATACCGTTGAC
TATTGTATACTGAGAGCGATCATTTAAATACGATTTTATGTACTCAAGAA
ATGATCCAGATATTCCACAACCGGCCAGTTTATCAAGCAAAATAGGATGA
GCTACACTAtcgaatgctttttgaaagtcaataaataaaacaacaacaac
ttttCCCGAATCAATAGATTTCAGCCATTTCTCTGTCATATGAAGAAGAA
GATCTTCACAAGAGCTCTGTTTGCGAAAACCCCATTGAAAATTGCTGAAA
AGATTGAATGATTCCAAATGACCAACTAGAGCATTGCAAATGAATTTCTC
AACGACTTTACTTGGTATAGATAACAGTGAGATAGGAGGATAATTACCAC
AATCTTTCTTTGATCCCTTGTTTTTATACAAACAGGATACCCTTGCAGTT
TTCCAAGTAGATGTAAAGGATCCATGCTCaatacttttacaaaaaacttt
gaaaaggcTTGAAACTGATGTTGATTCATGTAATTTCAAATCCTTTGAAG
AAATATTATCCGGGCCACaagattttccatttttaacAGCTgaggaaaaa
cactttttgaatTCATTGATTTCTGGCGCAATCTCTGATAATGTGGGGGT
GATCATATATACATTTGAGTTGTCATTAACTGATTCAacattttttgcca
atttctctcctacattagcaaaaaaattattcattgtttgagatttttca
aaattatcagTTATAAGATTCTCGTTTTCAAGCAACGGTCCTATTTTTGA
AGTATTCTTTCCACCGTTGTATTCATTGACAGTTTTCCAGAATGATTTGC
TATTATTAGACTtgtcaaatttgtttttccaatAAGTAGCTTTTGCTATG
CGGATCAAATTAGTGCAAGAGTTCCTTTTCTTGTTGTACTGTTTCCATTC
AGCTGATCCTTTACCGGTATTTTTTGCTTTAACAAACAGTTTATAACGTT
CATTAAGAGATTTTCTTATGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00065622-exon-scaffold_440-1491911889:53717..55811 | TCONS_00065622-exon-scaffold_440-1491911889:53717..55811 | Clytia hemisphaerica | exon |
| TCONS_00065622-exon-scaffold_440-1510915933:53717..55811 | TCONS_00065622-exon-scaffold_440-1510915933:53717..55811 | Clytia hemisphaerica | exon |
| TCONS_00065622-exon-scaffold_440-1575043694:53717..55811 | TCONS_00065622-exon-scaffold_440-1575043694:53717..55811 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_440 | supercontig | scaffold_440:53717..55811 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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