TCONS_00065621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065621
Unique NameTCONS_00065621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065621 ID=TCONS_00065621|Name=TCONS_00065621|organism=Clytia hemisphaerica|type=transcript|length=383bp
NNCTATTTGGCGTTTATCTACTGGTAATAGTTACAGAGTAGTGGCAAAAG
CCTTCGGAGTCGGAATTAAGAGTGTACATGTGATATTGTTAGAATTTTGC
TACACACCCTAAAAATAATATAAGGTTTCCCACTACAGTGAAAGAAATTG
TCCTATTTATTGCTAATCCACTAAAACTTGCTCAGGGGCATGTATGAAGT
TACAAAAGATTTTACGATCAAAGCCTGATGTTGATGTGGGAATTAAAGCC
CTCCTCTGAAAAGAAACCATTATCGTGCTGCATgcttcttttcatttctt
tttacgAACTATAGAATTAACCTTTTCACAGTTTAACAACTATTTCATTA
AGTATATTAGCTTGATTTTgtcagtggaaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_440:50570..50952

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065621 ID=TCONS_00065621|Name=TCONS_00065621|organism=Clytia hemisphaerica|type=transcript|length=383bp|location=Sequence derived from alignment at scaffold_440:50570..50952 (Clytia hemisphaerica)
gtttttccactgacAAAATCAAGCTAATATACTTAATGAAATAGTTGTTA
AACTGTGAAAAGGTTAATTCTATAGTTcgtaaaaagaaatgaaaagaagc
ATGCAGCACGATAATGGTTTCTTTTCAGAGGAGGGCTTTAATTCCCACAT
CAACATCAGGCTTTGATCGTAAAATCTTTTGTAACTTCATACATGCCCCT
GAGCAAGTTTTAGTGGATTAGCAATAAATAGGACAATTTCTTTCACTGTA
GTGGGAAACCTTATATTATTTTTAGGGTGTGTAGCAAAATTCTAACAATA
TCACATGTACACTCTTAATTCCGACTCCGAAGGCTTTTGCCACTACTCTG
TAACTATTACCAGTAGATAAACGCCAAATAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041109XLOC_041109Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065621-exon-scaffold_440-1491911889:50570..50952TCONS_00065621-exon-scaffold_440-1491911889:50570..50952Clytia hemisphaericaexon
TCONS_00065621-exon-scaffold_440-1510915933:50570..50952TCONS_00065621-exon-scaffold_440-1510915933:50570..50952Clytia hemisphaericaexon
TCONS_00065621-exon-scaffold_440-1575043694:50570..50952TCONS_00065621-exon-scaffold_440-1575043694:50570..50952Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:50570..50952 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.40779	0.19883	0.461721	0	4.94935	3.65957	1.57284	2.30701	4.57048	8.85476	0	1.5463	1.60446	0	0.657878	0.745487	0.45919	0.193092	0.216745	0.226808	0.365601	0.28847	0	0.714044	2.18913	0	2.23664	0.750073	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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