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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065601 ID=TCONS_00065601|Name=TCONS_00065601|organism=Clytia hemisphaerica|type=transcript|length=1480bpRun BLAST on NCBI transcript from alignment at scaffold_440:222963..236989- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065601 ID=TCONS_00065601|Name=TCONS_00065601|organism=Clytia hemisphaerica|type=transcript|length=14027bp|location=Sequence derived from alignment at scaffold_440:222963..236989- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065601 vs. Swiss-Prot (Human)
Match: TMPS9 (Transmembrane protease serine 9 OS=Homo sapiens GN=TMPRSS9 PE=1 SV=2) HSP 1 Score: 237.654 bits (605), Expect = 2.727e-68 Identity = 155/467 (33.19%), Postives = 245/467 (52.46%), Query Frame = 2
Query: 152 RIVGGVNAAPGDLPWQAAMRSRNSGKPFCGATLISKKWAISAAHC----QIRAGQQIVLGAHNFRLGSEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTRSGG-SQPNILQEAEVKVVSRQDCNSRYGNGIDQTMLCAAAR-GK-DSCQGDSGGPLVVDLKDSNGGDRFYLAGVVSFGIGCANPNYPGVYSNVASLRNWIQTNLASAXXXXXXXXXXXXXXXXXXXXITTARPTEGPAPGPGADVFN----------DLKVCGKSKSTRFLDMIQRIVGGVDANEGDLPWQAAMRSRNSGKPFCGATLISKKWAVSAAHC-------QIRAGQQIVLGAHNFRQATEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTASG-GSQPNILQEAEV 1477
RIVGG+ A+PG+ PWQA++R + FCGA +I+ +W +SAAHC Q +GA + GSEAS V + + H YN T D+A++EL+ + F ++P C+ ++ +ISGWG + +P +LQ+A V+++ + C S YG+ + M+CA GK DSCQGDSGGPLV + + +G RF+LAG+VS+GIGCA PGVY+ V LR+WI A + +P + P + P P + L+ CG + ++ R+VGG A G++PWQ ++ + + FCGAT++ +W +SAAHC Q+RA LG + + +I +RR + H YN + D+A++EL+ + F+++++P C+ + ++ +ISGWG T G ++P +LQ+A V
Sbjct: 202 RIVGGMEASPGEFPWQASLRENK--EHFCGAAIINARWLVSAAHCFNEFQDPTKWVAYVGA-TYLSGSEASTVRAQVVQIVKHPLYNADTADFDVAVLELTSPLPFGRHIQPVCLPAATHIFPPSKKCLISGWGYLKEDFLVKPEVLQKATVELLDQALCASLYGHSLTDRMVCAGYLDGKVDSCQGDSGGPLVCE--EPSG--RFFLAGIVSWGIGCAEARRPGVYARVTRLRDWILEATTKASMPLAPTMAPAPAAPSTAWPTSPESPVVS-TPTKSMQALSTVPLDWVTVPKLQECGARPA---MEKPTRVVGGFGAASGEVPWQVSL--KEGSRHFCGATVVGDRWLLSAAHCFNHTKVEQVRAH----LGTASLLGLGGSPVKI-GLRRVVLHPLYNPGILDFDLAVLELASPLAFNKYIQPVCLPLAIQKFPVGRKCMISGWGNTQEGNATKPELLQKASV 650 HSP 2 Score: 235.728 bits (600), Expect = 1.410e-67 Identity = 158/495 (31.92%), Postives = 242/495 (48.89%), Query Frame = 2
Query: 137 LDQISRIVGGVNAAPGDLPWQAAMRSRNSGKPFCGATLISKKWAISAAHC-------QIRAGQQIVLGAHNFRLGSEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTRSG-GSQPNILQEAEVKVVSRQDCNSRYGNGIDQTMLCAA-ARGK-DSCQGDSGGPLVVDLKDSNGGDRFYLAGVVSFGIGCANPNYPGVYSNVASLRNWIQTNLAS--------AXXXXXXXXXXXXXXXXXXXXITTARPTEG-------------------------PAP-GPGADVFNDLKVCGKSKSTRFLDMIQRIVGGVDANEGDLPWQAAMRSRNSGKPFCGATLISKKWAVSAAHCQIRAG---QQIVLGAHNFRQATEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTASGGSQPNILQEAEVK 1480
+++ +R+VGG AA G++PWQ +++ + FCGAT++ +W +SAAHC Q+RA LG + LG S +RR + H YN + D+A++EL+ + F+++++P C+ + ++ +ISGWG T+ G ++P +LQ+A V ++ ++ C+ Y + M+CA GK DSCQGDSGGPL + FYLAG+VS+GIGCA PGVY+ + L+ WI ++S + G + T +RPT G P P P A L CG + + + RIVGG A G+ PWQ ++ R + CGA L++++W +SAAHC G Q F E Q+ V R H YN T+ D+AL+EL+ V V+P C+ + + + T VI+GWG+ GGS LQ+A V+
Sbjct: 498 MEKPTRVVGGFGAASGEVPWQVSLK--EGSRHFCGATVVGDRWLLSAAHCFNHTKVEQVRAH----LGTASL-LGLGGSPVKIGLRRVVLHPLYNPGILDFDLAVLELASPLAFNKYIQPVCLPLAIQKFPVGRKCMISGWGNTQEGNATKPELLQKASVGIIDQKTCSVLYNFSLTDRMICAGFLEGKVDSCQGDSGGPLACE----EAPGVFYLAGIVSWGIGCAQVKKPGVYTRITRLKGWILEIMSSQPLPMSPPSTTRMLATTSPRTTAGLTVPGATPSRPTPGAASRVTGQPANSTLSAVSTTARGQTPFPDAPEATTHTQLPDCGLAPAA-----LTRIVGGSAAGRGEWPWQVSLWLRRR-EHRCGAVLVAERWLLSAAHCFDVYGDPKQWAAFLGTPFLSGAEG--QLERVARIYKHPFYNLYTLDYDVALLELAGPVRRSRLVRPICLPEPAPRPPDGTRCVITGWGSVREGGSMARQLQKAAVR 973 HSP 3 Score: 163.696 bits (413), Expect = 1.168e-42 Identity = 94/241 (39.00%), Postives = 135/241 (56.02%), Query Frame = 2
Query: 146 ISRIVGGVNAAPGDLPWQAAMRSRNSGKPFCGATLISKKWAISAAHCQIRAG---QQIVLGAHNFRLGSEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTRSGGSQPNILQEAEVKVVSRQDCNSRYGNGIDQTMLCAAAR--GKDSCQGDSGGPLVVDLKDSNGGDRFYLAGVVSFGIGCANPNYPGVYSNVASLRNWIQTNL 853
++RIVGG A G+ PWQ ++ R + CGA L++++W +SAAHC G Q F G+E Q+ V R H YN T+ D+AL+EL+ V V+P C+ + + + T VI+GWG+ R GGS LQ+A V+++S Q C Y I MLCA G DSC GD+GGPL ++ +G R+ L GV S+G GC P++PGVY+ VA++R WI ++
Sbjct: 824 LTRIVGGSAAGRGEWPWQVSLWLRRR-EHRCGAVLVAERWLLSAAHCFDVYGDPKQWAAFLGTPFLSGAEG--QLERVARIYKHPFYNLYTLDYDVALLELAGPVRRSRLVRPICLPEPAPRPPDGTRCVITGWGSVREGGSMARQLQKAAVRLLSEQTCRRFYPVQISSRMLCAGFPQGGVDSCSGDAGGPLAC--REPSG--RWVLTGVTSWGYGCGRPHFPGVYTRVAAVRGWIGQHI 1057 HSP 4 Score: 91.2781 bits (225), Expect = 3.324e-19 Identity = 56/167 (33.53%), Postives = 87/167 (52.10%), Query Frame = 2
Query: 995 CGKSKSTRFLDMIQRIVGGVDANEGDLPWQAAMRSRNSGKPFCGATLISKKWAVSAAHC----QIRAGQQIVLGAHNFRQATEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTASGG-SQPNILQEAEVK 1480
CG + R M RIVGG++A+ G+ PWQA++R + FCGA +I+ +W VSAAHC Q +GA + +EAS V + + H YN T D+A++EL+ + F ++P C+ ++ +ISGWG +P +LQ+A V+
Sbjct: 191 CGLQPAWR---MAGRIVGGMEASPGEFPWQASLRENK--EHFCGAAIINARWLVSAAHCFNEFQDPTKWVAYVGA-TYLSGSEASTVRAQVVQIVKHPLYNADTADFDVAVLELTSPLPFGRHIQPVCLPAATHIFPPSKKCLISGWGYLKEDFLVKPEVLQKATVE 351 The following BLAST results are available for this feature:
BLAST of TCONS_00065601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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