Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065598 ID=TCONS_00065598|Name=TCONS_00065598|organism=Clytia hemisphaerica|type=transcript|length=2346bpRun BLAST on NCBI transcript from alignment at scaffold_440:222963..236988- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065598 ID=TCONS_00065598|Name=TCONS_00065598|organism=Clytia hemisphaerica|type=transcript|length=14026bp|location=Sequence derived from alignment at scaffold_440:222963..236988- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00065598 vs. Swiss-Prot (Human)
Match: TMPS9 (Transmembrane protease serine 9 OS=Homo sapiens GN=TMPRSS9 PE=1 SV=2) HSP 1 Score: 382.104 bits (980), Expect = 5.934e-117 Identity = 266/801 (33.21%), Postives = 397/801 (49.56%), Query Frame = 1 Query: 151 RIVGGVNAAPGDLPWQAAMRSRNSGKPFCGATLISKKWAISAAHC----QIRAGQQIVLGAHNFRLGSEGSRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFNEFVKPACVLDSSKQLAAETPVVISGWGTTASGG-SQPNILQEAEVKVVSNQVCNSRYGNGIDQTMLCAAAR-GK-DSCQGDSGGPLVVDLKDSNGGDRFFLAGVVSFGIGCANPNYPGVYSNVASLRNWI--QTNLASAGVQXXXXXXXXXXXXXXXXXXXXXXXXXXSDAFNDFSV-------------CGKTKNTRFLDSISRIVGGVNAAPGDLPWQAAMRRTDSGKPFCGATLISKKWAISAAHC-------QIRAGQQIVLGAHNFRLGAEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTRSG-GSQPNILQEAEVKVVSRQDCNSRYGNGIDQTMLCAA-ARGK-DSCQGDSGGPLVVDLKDSNGGDRFYLAGVVSFGIGCANPNYPGVYSNVASLRNWIQTNLAS--------AXXXXXXXXXXXXXXXXXXXXITTARPTEG-------------------------PAP-GPGADVFNDLKVCGKSKSTRFLDMIQRIVGGVDANEGDLPWQAAMRSRNSGKPFCGATLISKKWAVSAAHCQIRAG---QQIVLGAHNFRQATEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTASGGSQPNILQEAEVK 2346 RIVGG+ A+PG+ PWQA++R + FCGA +I+ +W +SAAHC Q +GA + GSE S V + + H YN T D+A++EL+ + F ++P C+ ++ +ISGWG +P +LQ+A V+++ +C S YG+ + M+CA GK DSCQGDSGGPLV + + +G RFFLAG+VS+GIGCA PGVY+ V LR+WI T AS + P P T P + +T + + S CG ++ +R+VGG AA G++PWQ +++ + + FCGAT++ +W +SAAHC Q+RA LG + LG S +RR + H YN + D+A++EL+ + F+++++P C+ + ++ +ISGWG T+ G ++P +LQ+A V ++ ++ C+ Y + M+CA GK DSCQGDSGGPL + FYLAG+VS+GIGCA PGVY+ + L+ WI ++S + G + T +RPT G P P P A L CG + + + RIVGG A G+ PWQ ++ R + CGA L++++W +SAAHC G Q F E Q+ V R H YN T+ D+AL+EL+ V V+P C+ + + + T VI+GWG+ GGS LQ+A V+ Sbjct: 202 RIVGGMEASPGEFPWQASLRENK--EHFCGAAIINARWLVSAAHCFNEFQDPTKWVAYVGA-TYLSGSEASTVRAQVVQIVKHPLYNADTADFDVAVLELTSPLPFGRHIQPVCLPAATHIFPPSKKCLISGWGYLKEDFLVKPEVLQKATVELLDQALCASLYGHSLTDRMVCAGYLDGKVDSCQGDSGGPLVCE--EPSG--RFFLAGIVSWGIGCAEARRPGVYARVTRLRDWILEATTKASMPLAPTMAPAPAAPSTAWPTSPESPVVSTPTKSMQALSTVPLDWVTVPKLQECGARPA---MEKPTRVVGGFGAASGEVPWQVSLK--EGSRHFCGATVVGDRWLLSAAHCFNHTKVEQVRAH----LGTASL-LGLGGSPVKIGLRRVVLHPLYNPGILDFDLAVLELASPLAFNKYIQPVCLPLAIQKFPVGRKCMISGWGNTQEGNATKPELLQKASVGIIDQKTCSVLYNFSLTDRMICAGFLEGKVDSCQGDSGGPLACE----EAPGVFYLAGIVSWGIGCAQVKKPGVYTRITRLKGWILEIMSSQPLPMSPPSTTRMLATTSPRTTAGLTVPGATPSRPTPGAASRVTGQPANSTLSAVSTTARGQTPFPDAPEATTHTQLPDCGLAPAA-----LTRIVGGSAAGRGEWPWQVSLWLRRR-EHRCGAVLVAERWLLSAAHCFDVYGDPKQWAAFLGTPFLSGAEG--QLERVARIYKHPFYNLYTLDYDVALLELAGPVRRSRLVRPICLPEPAPRPPDGTRCVITGWGSVREGGSMARQLQKAAVR 973 HSP 2 Score: 167.933 bits (424), Expect = 7.475e-43 Identity = 92/251 (36.65%), Postives = 145/251 (57.77%), Query Frame = 1 Query: 136 LDQISRIVGGVNAAPGDLPWQAAMRSRNSGKPFCGATLISKKWAISAAHC-------QIRAGQQIVLGAHNFRLGSEGSRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFNEFVKPACVLDSSKQLAAETPVVISGWGTTASG-GSQPNILQEAEVKVVSNQVCNSRYGNGIDQTMLCAA-ARGK-DSCQGDSGGPLVVDLKDSNGGDRFFLAGVVSFGIGCANPNYPGVYSNVASLRNWIQTNLAS 858 +++ +R+VGG AA G++PWQ +++ + FCGAT++ +W +SAAHC Q+RA LG + LG GS +RR + H YN + D+A++EL+ + FN++++P C+ + ++ +ISGWG T G ++P +LQ+A V ++ + C+ Y + M+CA GK DSCQGDSGGPL + F+LAG+VS+GIGCA PGVY+ + L+ WI ++S Sbjct: 498 MEKPTRVVGGFGAASGEVPWQVSLK--EGSRHFCGATVVGDRWLLSAAHCFNHTKVEQVRAH----LGTASL-LGLGGSPVKIGLRRVVLHPLYNPGILDFDLAVLELASPLAFNKYIQPVCLPLAIQKFPVGRKCMISGWGNTQEGNATKPELLQKASVGIIDQKTCSVLYNFSLTDRMICAGFLEGKVDSCQGDSGGPLACE----EAPGVFYLAGIVSWGIGCAQVKKPGVYTRITRLKGWILEIMSS 737 HSP 3 Score: 164.466 bits (415), Expect = 1.048e-41 Identity = 96/244 (39.34%), Postives = 137/244 (56.15%), Query Frame = 1 Query: 1009 SISRIVGGVNAAPGDLPWQAAM--RRTDSGKPFCGATLISKKWAISAAHCQIRAG---QQIVLGAHNFRLGAEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTRSGGSQPNILQEAEVKVVSRQDCNSRYGNGIDQTMLCAAAR--GKDSCQGDSGGPLVVDLKDSNGGDRFYLAGVVSFGIGCANPNYPGVYSNVASLRNWIQTNL 1719 +++RIVGG A G+ PWQ ++ RR + CGA L++++W +SAAHC G Q F GAE Q+ V R H YN T+ D+AL+EL+ V V+P C+ + + + T VI+GWG+ R GGS LQ+A V+++S Q C Y I MLCA G DSC GD+GGPL ++ +G R+ L GV S+G GC P++PGVY+ VA++R WI ++ Sbjct: 823 ALTRIVGGSAAGRGEWPWQVSLWLRRREHR---CGAVLVAERWLLSAAHCFDVYGDPKQWAAFLGTPFLSGAEG--QLERVARIYKHPFYNLYTLDYDVALLELAGPVRRSRLVRPICLPEPAPRPPDGTRCVITGWGSVREGGSMARQLQKAAVRLLSEQTCRRFYPVQISSRMLCAGFPQGGVDSCSGDAGGPLAC--REPSG--RWVLTGVTSWGYGCGRPHFPGVYTRVAAVRGWIGQHI 1057 HSP 4 Score: 164.081 bits (414), Expect = 1.299e-41 Identity = 94/241 (39.00%), Postives = 136/241 (56.43%), Query Frame = 1 Query: 145 ISRIVGGVNAAPGDLPWQAAMRSRNSGKPFCGATLISKKWAISAAHCQIRAG---QQIVLGAHNFRLGSEGSRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFNEFVKPACVLDSSKQLAAETPVVISGWGTTASGGSQPNILQEAEVKVVSNQVCNSRYGNGIDQTMLCAAAR--GKDSCQGDSGGPLVVDLKDSNGGDRFFLAGVVSFGIGCANPNYPGVYSNVASLRNWIQTNL 852 ++RIVGG A G+ PWQ ++ R + CGA L++++W +SAAHC G Q F G+EG Q+ V R H YN T+ D+AL+EL+ V + V+P C+ + + + T VI+GWG+ GGS LQ+A V+++S Q C Y I MLCA G DSC GD+GGPL ++ +G R+ L GV S+G GC P++PGVY+ VA++R WI ++ Sbjct: 824 LTRIVGGSAAGRGEWPWQVSLWLRRR-EHRCGAVLVAERWLLSAAHCFDVYGDPKQWAAFLGTPFLSGAEG--QLERVARIYKHPFYNLYTLDYDVALLELAGPVRRSRLVRPICLPEPAPRPPDGTRCVITGWGSVREGGSMARQLQKAAVRLLSEQTCRRFYPVQISSRMLCAGFPQGGVDSCSGDAGGPLAC--REPSG--RWVLTGVTSWGYGCGRPHFPGVYTRVAAVRGWIGQHI 1057 HSP 5 Score: 91.2781 bits (225), Expect = 1.038e-18 Identity = 56/167 (33.53%), Postives = 87/167 (52.10%), Query Frame = 1 Query: 1861 CGKSKSTRFLDMIQRIVGGVDANEGDLPWQAAMRSRNSGKPFCGATLISKKWAVSAAHC----QIRAGQQIVLGAHNFRQATEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTASGG-SQPNILQEAEVK 2346 CG + R M RIVGG++A+ G+ PWQA++R + FCGA +I+ +W VSAAHC Q +GA + +EAS V + + H YN T D+A++EL+ + F ++P C+ ++ +ISGWG +P +LQ+A V+ Sbjct: 191 CGLQPAWR---MAGRIVGGMEASPGEFPWQASLRENK--EHFCGAAIINARWLVSAAHCFNEFQDPTKWVAYVGA-TYLSGSEASTVRAQVVQIVKHPLYNADTADFDVAVLELTSPLPFGRHIQPVCLPAATHIFPPSKKCLISGWGYLKEDFLVKPEVLQKATVE 351 The following BLAST results are available for this feature:
BLAST of TCONS_00065598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|