TCONS_00065589 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065589
Unique NameTCONS_00065589
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length980

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065589 ID=TCONS_00065589|Name=TCONS_00065589|organism=Clytia hemisphaerica|type=transcript|length=980bp
TTAAATCAATACCGTGGCTATTTAAAAGACACAAGAGAAATCAAACGGAA
CTGAGACTTGTTTGGCAAATTAGGTTATTGGGGATTCAACCAGATCGTGG
AAGGTTTTAAAGAATGGAAAAGGATCAAGAAAGGAATGGGTAAATTGGCT
ATCGATGAAACAGGACTAATGTTCGCATCATGCAAGATGATCGAGACAGC
TTTGAAAAACGATGATTTAAACATCTTCAACACGGTGAAGAAAGTGTGTT
ACAATGGGCAAACAATGAACACTTACTACTTACGTTACATCacacaaaaa
cttttgaaaaccacAAGTAATTTGTTTACCGTTTCCCAACTCAATTACCC
ACACGACGGAGCAGGTGATCGAGTCCAAGGTATGGATAATGATTTAGCGG
ACTTTTTTACGGAAATGTCAAATCTGAAAAATacgatcactttcgttttc
gccgATCATGGGAATACGTATACGAATTATATTTACGCTGAAGTGGACGG
GCGTTACGAACAACATCATCCACACTTCTTTACCATCCTCCCTGAGAAAG
TCATCAAAAGGCTTGGGTACGAGACTGTCAATGCATTACGTCATAACCGA
TTACGATTAGTCAGTCTTATAGATTTACATCATACGATCAAACGATTGGC
GGATAGGAATTATCCAAAAAAGGGAATATTAGAAATGGTACCAGCAAACC
GAACGTGTGGCGACTTGGAGCTTTCTACGCCAAATTTTTGTGTTTGCCAG
GACTGGGATTCACCAATGATGAATAAAACATTATATTGGCCTTTCGTTGA
ATTTGCTGTTGGAAATATCAATAACATGATAAGTGATGTTTCGCCTGAAT
CACGGTGTAAAAGACTAGTTCCTCAACGTTATGAGAACCTGATTAGCCGT
AAGAAAGGAGCCAACATTGAGTTAAGTATGGATGTAGTGACAAAGCCTGG
AGTTGGATCGACAAATAATGAAGAAAGATT
Run BLAST on NCBI

transcript from alignment at scaffold_440:613290..620506+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065589 ID=TCONS_00065589|Name=TCONS_00065589|organism=Clytia hemisphaerica|type=transcript|length=7217bp|location=Sequence derived from alignment at scaffold_440:613290..620506+ (Clytia hemisphaerica)
TTAAATCAATACCGTGGCTATTTAAAAGACACAAGAGAAATCAAACGGAA
CTGAGACTTGTTTGGCAAATTAGGTAAAAACACAATTTATCCTAGAAGTA
GTTGTGCCAAAGATAAAAAAGAtgtatacactttttttatataagaacaa
ttttataagaacaatgaggttcaacatcgccaaaaaataaaaataattta
agaacaatgctgagcctgaagtCACTCAAATTCAACCAATAAAGTAGTAA
GAATTGGGTATAACgcttaaaatacctcaattacacctTATAAATAAGGA
CATAATAATatagaacaatttgaggctcaaagtgccaaaaaaataagaac
aaccaagcctcagaaaaattttactggttcttataaaaactataaatgtt
ttaattttactgATCTCTGAAATTTAGCTCTACGTAATAATTCTGCGCCC
TCATTATTATCAAGTCATGACTATTAACAGTGCTTCTTTCAATGCGAATT
TGGTCTTCACtcatatgaaaataaaaatcttaatCAAATTCTTTATAATC
AGGGGGACATCCACTGTTTATCTGAGAACGTATATGAACCCAATATAAAT
ATATATCAAAATATAgatataaagaaaagaaaataaacattaGTAGAATG
AGTTTTCAGTTATGATATTCTCCAAGCGACGTTATTGTAGTCGATAATGA
CCTGACAAATAAAATTGTGTTCAGAATGAAAGATGAAAGTCaggacaaaa
aattatttttgaaaagctagAAGAAGATAGTTACAGAAAACCGTGATGTT
GAAATCTTAACATCATCTAAAAAACTTTTGTATATAAGGATTTTAGCGCT
AATATTCAAAGTTTAACACATTTGGAGGGATTTAGATCGTTTAtcgctaa
aacttgaaaacactCTTGAGCTTTTTTTATGGTTAACACTCAATGAGCTT
TTTcgtgaaaaaagtttcaatgcATACGAAATTATTTCATTGGTGGAAGG
AAAGGAAGCCATTTTCAAGTTTCGATAATAAATTTTGCGAAACATGGTTT
GGTGAGGAAGTAGGAGCTATCAAAAAGCTAAATCATTGCCCGATATCATA
ATCATTGTTTTGTGTTTGCAAATTTTCTTACAGACAAAGCAAAAAGTTTT
GATCCTAATTAAATGAAGAAATCCTCAGCATATGTGCTTCTATCCATTAA
ATCTTTAATTTGCGCTCTCATTACACTGCAATATTCTGATAAGGATTGGG
ATCTCTATCTACAAATCTTAACTTTTGAAGCTGTGATTCTTGTTTTGTTA
TTGCTAGATGAAGTGGTATATTATGCACCAGTTATCTTCACGAGGGGAGG
TTTTCTGCGTGAGTATGAGTTTTTAAAGCTGCCACAGAGGCTGAGGAGAT
CatctatttcttcaaaaaatctcTTTACGGTGCATGAACATAACATATTT
GGGGCATACCGGAAAAGTCTGATGGGTGAACccgggaacctaagtgggaa
ccctaAGTGGAAACCTAAGTAGGAACCTTAAGTATGGAAATGCGGGTGGT
GGTGGGGAACTTCATCTCagctgttttttgtttttttatcacttttagcA
TCAAATTGTTCTTTTCATGTTCCTTATTTAAAGGGtatgtaattgaggta
ttttctGAAGCATAAAAgcctttcattttttaccacttTAACCCCctggc
tcagcattgttcttaaatggTTCTagcttttttgtaattttaagcctcat
tgttcttataaaagaaaaggagtgtagctggaacctaaGGCTCGTTATTA
AAGACGAAAACCCATTTCTACAACATCAAGCTGAAGTTTAGGCTCATCAA
AACCTATTTTAATTTCAACTTTGATTCTAGAATTTACAAGCATTTTCGTC
TTCCTTTGCattgataaaatcttttttaaatctttgcaCACTTATAAGAA
ATATAGGTACATAGACGTCTTTATACTaatagattaaaaatttagttctt
gttcttataatagaatatttaacctttttttttgtGGTCTTGACTTGGTG
CGAGtatgtttctttgtatttgtgtacgagtttatgtatatttcttatgt
ttgtttgtttgtttggactgcgggtcggttgacagggttatggaatctgg
gggaggctgagtgttggacgtccttaaaacatgtttaaagcatgttaaag
ctcagaataagcttaactaaggctcaagaaTACATTACATTTTTGTTGGG
CTTTGGGTAGTTNaaagctcagaataagcttaactaaggctccagaatAC
ATTACATTTTTGTTGGGCTTTGGGTAGTTTTTAgatgttttcatttttgt
caTTGCTGTGTTTATGTTTCTGGTTTAAAACATTATATcaattggtttgt
tggttctctctttttcgcataaaattctcagtccctttttatctttcatt
tgtattttatttagtattttcaacacttgctcttcttgaggtcagatctc
agatcttcaccatatataatAGATTTACTCACTTGTGAAATCTTCCGATA
CAATTAGCTAGAAAACCCTGCTAGCCTTGGCTACGACATGTTTTCCTTCG
TTTCGAGAGAAAAACTCATGGGGGTTACTGGTGGCcacctatagcagtgc
ctatagaccaagagtaggGCCTAAAAGCCTAAAGCTGTCTATTGTGTTGT
AGACTAATCCTACCTCCTTTTAGAAAAGTCACAACGTAGGAGAGACAGTA
AATAGCAAATCTGTTAAGCTATTGTTTACTACTTTTCCCTCTCTCTATtg
aaaccccgggggggggtactagggttggcgaatgaggggtatgtgcggac
gggacctcaatttttatttttcgatttttgaaaaaagttatacCCTTAGA
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NNNNNNNNNNNNNNTTccccaaatttggggtaactctcggacgagaattt
taGACACGATTAGCATCCcctatcaaaacatatcagagtgGATTCGTGCA
TcctaaaaacaaaggaatctcGGTTAAAATCCGGCTACTTACTGTACAGC
ACTCATGTCAgtgtggggatggttttggagtgcaatttctaaacaatgaa
tttcgaatgggggtAACATCAAAGTCAATatctcagtggggctgaaattc
tagggtatttttcccaccggggccgtaatttttgccaaattttccagtgg
gactggggccccaacgggtctgtgacacaggggtgttgtaCATGTTTCGT
TCAGTTAATAGATAACCAAGCGGCTGGTCGTGGACACCGGGAAAACAATC
GTGAGATCATTAGCTAGAAAGTCCTAGCTTACTAAACTACCTATTTATCG
ATCTTTTCTATCTCTCTAAATTTCTATTCAAGTCTGTCTATTTTGTCGCA
TTTACGTTTTAACAGAAACGGGTTGTTGGTATCTTTTGGACCCTTAGTAG
ACTCCAAACTTGTTCCCTTGCGTATTATTGGCTATTTGATACCTACTTAA
CTGATAGCGCAAGAATTCTATGGCGTCCCTCAATAACGAAAATAAAGCCT
AGGATACACTGGGACGAGGTTGTGTAACTTGACTGTTGATCTTTTGTTCG
CAATTAATCATAACAAGACCGCTAAATATTATTGTTTCTTTGGTCTTCTA
CAGGTTATTGGGGATTCAACCAGATCGTGGAAGGTTTTAAAGAATGGAAA
AGGATCAAGAAAGGAATGGGTAAATTGGCTATCGATGAAACAGGTTcgct
caattttattttttagtctCTAGCAACTGGCACataaaatcatttaatgt
tCGTACAAGGCTACAAGGGCGTTGTGAACGTTGTGAACACGTTTTGTGCA
TCTCAGGAGTGGGGATACTCAAGGTTTGTAACGGACCCTAGGTTTCGCTC
TTGGTGGTAAGTTTATCAGACTTAAAAGTAATCTGCAgatgttgaaaaga
taaaatgCAAATATTTTAGCAAATTTTCGTACAATTTGCAAAGAGCTGAA
AACAGTTGAATCATTATGACATAGTATGCTCGATTATCATGCTGATTCTT
CCTAGTATAGCTTCGATGTCTAATCATTAAATGATGATGGGGATCGCTGT
GATTTTAGATGATGATACTGAATGCGGGCCCACCGGTTTTTGTGTCATAA
TCCGGGGGTTAAACAATTCGAGcaaatttcaacaaaagttcgacgttttt
tttttgaaaattatttcatcaGTTTAAGACTGAAAAATTGTTTGACTGTA
CTTTACAGTGTAACGTCTTTCTTAATTCACCCTCGCGTCAGGAAGCCTGA
ttgcctgtaccagacgaccacggctttttcctcgcGACACCGTTACAGAG
TGATAAAAAATTGCGTGTTAAGATAGAGATAGACTTACCCAAATGTGTGT
GTCGCAAATGCAAGGCGTCCCAGTTACCCTCGTGATCAATTTCAGCCCTT
TTGCGAACGGTGAAGTATTTAAAGTTAGCCAAACCTTTTTCTGTTTACAG
GACTAATGTTCGCATCATGCAAGATGATCGAGACAGCTTTGAAAAACGAT
GATTTAAACATCTTCAACACGGTGAAGAAAGTGTGTTACAATGGGCAAAC
AATGAACACTTACTACTTACGTTACATCacacaaaaacttttgaaaacca
cAAGTAATTTGTTTACCGTTTCCCAACTCAATTACCCACACGACGGAGCA
GGTGATCGAGTCCAAGGTATGGATAATGATTTAGCGGACTTTTTTACGGA
AATGTCAAATCTGAAAAATacgatcactttcgttttcgccgATCATGGGA
ATACGTATACGAATTATATTTACGCTGAAGTGGACGGGCGTTACGAACAA
CATCATCCACACTTCTTTACCATCCTCCCTGAGAAAGTCATCAAAAGGCT
TGGGTACGAGACTGTCAATGCATTACGTCATAACCGATTACGATTAGTCA
GTCTTATAGATTTACATCATACGATCAAACGATTGGCGGATAGGAATTAT
CCAAAAAAGGGAATATTAGAAATGGTACCAGCAAACCGAACGTGTGGCGA
CTTGGAGCTTTCTACGCCAAATTTTTGTGTTTGCCAGGACTGGGATTCAC
CAATGATGAATAAAACATTATATTGGCCTTTCGTTGAATTTGCTGTTGGA
AATATCAATAACATGATAAGTGATGTTTCGCCTGAATCACGGTGTAAAAG
ACTAGTTCCTCAACGTTATGAGAACCTGATTAGCCGTAAGAAAGGAGCCA
ACATTGAGTTAAGTATGGATGTAGTGACAAAGCCTGGAGTTGGATCGACA
AATAATGAAGAAAGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041097XLOC_041097Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065589-exon-scaffold_440-1491911889:613290..613362TCONS_00065589-exon-scaffold_440-1491911889:613290..613362Clytia hemisphaericaexon
TCONS_00065589-exon-scaffold_440-1510915933:613290..613362TCONS_00065589-exon-scaffold_440-1510915933:613290..613362Clytia hemisphaericaexon
TCONS_00065589-exon-scaffold_440-1575043694:613290..613362TCONS_00065589-exon-scaffold_440-1575043694:613290..613362Clytia hemisphaericaexon
TCONS_00065589-exon-scaffold_440-1491911889:618843..618932TCONS_00065589-exon-scaffold_440-1491911889:618843..618932Clytia hemisphaericaexon
TCONS_00065589-exon-scaffold_440-1510915933:618843..618932TCONS_00065589-exon-scaffold_440-1510915933:618843..618932Clytia hemisphaericaexon
TCONS_00065589-exon-scaffold_440-1575043694:618843..618932TCONS_00065589-exon-scaffold_440-1575043694:618843..618932Clytia hemisphaericaexon
TCONS_00065589-exon-scaffold_440-1491911889:619690..620506TCONS_00065589-exon-scaffold_440-1491911889:619690..620506Clytia hemisphaericaexon
TCONS_00065589-exon-scaffold_440-1510915933:619690..620506TCONS_00065589-exon-scaffold_440-1510915933:619690..620506Clytia hemisphaericaexon
TCONS_00065589-exon-scaffold_440-1575043694:619690..620506TCONS_00065589-exon-scaffold_440-1575043694:619690..620506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:613290..620506 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0230076	0.11218	0.0260504	0	0.0620541	0	1.09446	0.996925	1.1439	1.00864	1.14218	0.842762	0.612066	0.444945	0.274354	0.378545	0.293619	0.30095	0.733728	0.358304	0.111225	0.162755	0.0263801	0.119917	0.098809	0.374785	0.094644	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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