TCONS_00065586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065586
Unique NameTCONS_00065586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065586 ID=TCONS_00065586|Name=TCONS_00065586|organism=Clytia hemisphaerica|type=transcript|length=1296bp
tggctgggaacagtagtttatCAAGAATTATGGGCAATGAAATTTTTTAG
ACCTTGGTGAAGTTTGCTGATCGCATTCTCTTATCATCATTAATAATAAA
TACCTTCTTTCTCAGAAcaaagaacaaaaagaaaagacaaaTACTCAAAT
GTGACAAAATGGTAGACCTGACACCAATACAGACCCTGGGTTTAGTTTGT
TTACTCACGTTCAGTTTCTTTGTTATCGTTGTTCTATTTCTCGAATGTAT
TGGTCGATTTCATTGTATGATGAGAATAACGGACCAATCACAGACCAGAA
ACAAAACCATGACCGACCAATCAgaaaagcaaaacaaacttGATATCGAA
TCCAACTTAGTACATAATTTTGATAGATATTCAAATACTGCACGGAAAGG
ACCAAAATGCATACGAACAATTGGAATAAGCTCTGGAATAGGAGTTCAAT
GTTTTGATACAGTTAACTGTTATTGCTGCTGGAGAGAAGACGAACTGGAT
TCTAGTCTAGTCATAGCTCTACCATATAGTTGTAAAATTGATTACAACTT
TGTACGGACCAAAGAAGAAACATGTGCAATATGCCTGGACGAACTTACTA
GAAAGCAACCCATAAAATTAGACTGTAATCATCATTTTCATAACAGCTGT
ATCATGAAATGGCTTAGACAGTCTGACCAATGTCCACTTTGTAAGCAGAC
GGTCAATATTGAAGTGGTGGCAGATCCGTTGAGTGTGGATAGTTGTGAGA
GTATAGTTTTCCATGAGTTAGCTATATTGGATACCGTATCACATGTGTAA
CGATACCCTTATTAGTGGTGGAAGTCAATCCTGGGAGGGAGAGCATACAA
GGCAAGCGACCGACCGTAGATCAGGCTTCCCAAATTGCACTGAAGGATCA
AAATGATAGAGAAAGcacactgtaagggttgaaatGAGAGAAAGCGCATT
AAGAGGGTGTAAAAATTGACATACTGTTGACTCTTTATACTGGATAGATA
CGAGGAAGGCGAAAAGTTTACCATCGAATTACAGCGTAGCGGAGAACCTT
TTGCAAGACATTCACGATCAAAGAAAAAGCATAGTAAATAGTAACCGATA
TAAAATTGAACACGAATTTCATATCCTTATGACTTAATTGTTTATATGAA
ATCTAACAGGTTAAAACCACCaccatttcatttttttgggAATGAATTTA
TATGGTACAAAAGCTTATCATTTCGTTTTAGAAATATATTCTTGCAATAA
TTTTATAGGTTTTTATACTAAACAATTTTTAGACTATTTAGAGTCg
Run BLAST on NCBI

protein sequence of TCONS_00065586-protein

>TCONS_00065586-protein ID=TCONS_00065586-protein|Name=TCONS_00065586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MVDLTPIQTLGLVCLLTFSFFVIVVLFLECIGRFHCMMRITDQSQTRNKT
MTDQSEKQNKLDIESNLVHNFDRYSNTARKGPKCIRTIGISSGIGVQCFD
TVNCYCCWREDELDSSLVIALPYSCKIDYNFVRTKEETCAICLDELTRKQ
PIKLDCNHHFHNSCIMKWLRQSDQCPLCKQTVNIEVVADPLSVDSCESIV
FHELAILDTVSHV
Run BLAST on NCBI

transcript from alignment at scaffold_440:558821..560308+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065586 ID=TCONS_00065586|Name=TCONS_00065586|organism=Clytia hemisphaerica|type=transcript|length=1488bp|location=Sequence derived from alignment at scaffold_440:558821..560308+ (Clytia hemisphaerica)
tggctgggaacagtagtttatCAAGAATTATGGGCAATGAAATTTTTTAG
ACCTTGGTGAAGTTTGCTGATCGCATTCTCTTATCATCATTAATAATAAA
TACCTTCTTTCTCAGAAcaaagaacaaaaagaaaagacaaaTACTCAAAT
GTGACAAAATGGTAGACCTGACACCAATACAGACCCTGGGTTTAGTTTGT
TTACTCACGTTCAGTTTCTTTGTTATCGTTGTTCTATTTCTCGAATGTAT
TGGTCGATTTCATTGTATGATGAGAATAACGGACCAATCACAGACCAGAA
ACAAAACCATGACCGACCAATCAgaaaagcaaaacaaacttGATATCGAA
TCCAACTTAGTACATAATTTTGATAGATATTCAAATACTGCACGGAAAGG
ACCAAAATGCATACGAACAATTGGAATAAGCTCTGGAATAGGAGTTCAAT
GTTTTGATACAGTTAACTGTTATTGCTGCTGGAGAGAAGACGAACTGGAT
TCTAGTCTAGTCATAGCTCTACCATATAGTTGTAAAATTGATTACAACTT
TGTACGGACCAAAGAAGAAACATGTGCAATATGCCTGGACGAACTTACTA
GAAAGCAACCCATAAAATTAGACTGTAATCATCATTTTCATAACAGCTGT
ATCATGAAATGGCTTAGACAGTCTGACCAATGTCCACTTTGTAAGCAGAC
GGTCAATATTGAAGTGGTGGCAGATCCGTTGAGTGTGGATAGTTGTGAGA
GTATAGTTTTCCATGAGTTAGCTATATTGGATACCGTATCACATGTGTAA
CGATACCCTTATTAGTGGTGGAAGTCAATCCTGGGAGGGAGAGCATACAA
GGCAAGCGACCGACCGTAGATCAGGCTTCCCAAATTGCACTGAAGGATCA
AAATGATAGAGAAAGcacactgtaagggttgaaatGAGAGAAAGCGCATT
AAGAGGGTGTAAAAAGtaagaaaaccagttttttaggcaaattttggaca
aatatttttcaagaaaatgtacGATTTTTAAAGAGAATGCCTCACAGGAG
ATCGTTAAGAGAATGATGATTTGGTGTTTGGCCTTAGCtgctaaaaagat
aaaaataaaaataccttGGCTCTTTCGGATActgtttcatatttttctta
tttgtaGTTGACATACTGTTGACTCTTTATACTGGATAGATACGAGGAAG
GCGAAAAGTTTACCATCGAATTACAGCGTAGCGGAGAACCTTTTGCAAGA
CATTCACGATCAAAGAAAAAGCATAGTAAATAGTAACCGATATAAAATTG
AACACGAATTTCATATCCTTATGACTTAATTGTTTATATGAAATCTAACA
GGTTAAAACCACCaccatttcatttttttgggAATGAATTTATATGGTAC
AAAAGCTTATCATTTCGTTTTAGAAATATATTCTTGCAATAATTTTATAG
GTTTTTATACTAAACAATTTTTAGACTATTTAGAGTCg

Coding sequence (CDS) from alignment at scaffold_440:558821..560308+

>TCONS_00065586 ID=TCONS_00065586|Name=TCONS_00065586|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_440:558821..560308+ (Clytia hemisphaerica)
ATGGTAGACCTGACACCAATACAGACCCTGGGTTTAGTTTGTTTACTCAC
GTTCAGTTTCTTTGTTATCGTTGTTCTATTTCTCGAATGTATTGGTCGAT
TTCATTGTATGATGAGAATAACGGACCAATCACAGACCAGAAACAAAACC
ATGACCGACCAATCAgaaaagcaaaacaaacttGATATCGAATCCAACTT
AGTACATAATTTTGATAGATATTCAAATACTGCACGGAAAGGACCAAAAT
GCATACGAACAATTGGAATAAGCTCTGGAATAGGAGTTCAATGTTTTGAT
ACAGTTAACTGTTATTGCTGCTGGAGAGAAGACGAACTGGATTCTAGTCT
AGTCATAGCTCTACCATATAGTTGTAAAATTGATTACAACTTTGTACGGA
CCAAAGAAGAAACATGTGCAATATGCCTGGACGAACTTACTAGAAAGCAA
CCCATAAAATTAGACTGTAATCATCATTTTCATAACAGCTGTATCATGAA
ATGGCTTAGACAGTCTGACCAATGTCCACTTTGTAAGCAGACGGTCAATA
TTGAAGTGGTGGCAGATCCGTTGAGTGTGGATAGTTGTGAGAGTATAGTT
TTCCATGAGTTAGCTATATTGGATACCGTATCACATGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041095XLOC_041095Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065586-proteinTCONS_00065586-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065586-exon-scaffold_440-1491911889:558821..559785TCONS_00065586-exon-scaffold_440-1491911889:558821..559785Clytia hemisphaericaexon
TCONS_00065586-exon-scaffold_440-1510915933:558821..559785TCONS_00065586-exon-scaffold_440-1510915933:558821..559785Clytia hemisphaericaexon
TCONS_00065586-exon-scaffold_440-1575043694:558821..559785TCONS_00065586-exon-scaffold_440-1575043694:558821..559785Clytia hemisphaericaexon
TCONS_00065586-exon-scaffold_440-1491911889:559978..560308TCONS_00065586-exon-scaffold_440-1491911889:559978..560308Clytia hemisphaericaexon
TCONS_00065586-exon-scaffold_440-1510915933:559978..560308TCONS_00065586-exon-scaffold_440-1510915933:559978..560308Clytia hemisphaericaexon
TCONS_00065586-exon-scaffold_440-1575043694:559978..560308TCONS_00065586-exon-scaffold_440-1575043694:559978..560308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:558821..560308 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.130553	0.0318274	0.0369547	0	0.0440145	0.0347808	2.51769	2.82844	1.26517	0.987962	1.05814	1.73895	3.86378	2.84036	3.41008	5.09154	11.4912	6.85588	4.37159	3.92105	6.05884	5.21794	3.06863	3.74246	4.45036	4.5035	0.358028	0.429859	0.0362259	0.0738169
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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