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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065585 ID=TCONS_00065585|Name=TCONS_00065585|organism=Clytia hemisphaerica|type=transcript|length=1990bp
tttgtttattaTATTTCTTGTAAATAAAGCAGTTGCAGATCTTGCTATGA
AACTATAAAATAGAACTTAGAATTTCTTTAGTCTACATGATAGACAGCTG
CAGACTTTTAGGCTTTACctaagagtaggagttttatgCTCGAAGCGatg
gaagatatgacgtagcctaccaTTTCTTACTCCCTTCAaactaagaaaat
atttttctttttaggttGCTATGGTGGAGATTAACCTAGATACTGGAGTC
CCTCAAGGACTTGCCATCTTGTTTAGTTTTACAACTACCATTTTGATTTC
AGTACACGTGTTTGCACTAATGATCTCAACGTGTATTTTACCAAATATCG
AAACAGTCGAATTGATGCATAATAGCGTTTACGTACAGCAGCAGCTTGGA
GACAAAACATTAGCAAGTCATTCACCACATcggaaatttcgaaaatatat
TGAGGTTGCTTGGATATTTAGTACTGGTTTAGGTGCCTTGttatttttaa
ttgaaattcCCATTTTAATGTGGGTGAAATTTTACTATTTGAGTATTTAT
GCTGCATATGTTTCGATGGGAATTATGATACCAGTTTGtgtactttttgt
attttttgcttttaaatttTATCGGAAATTGGTTGAACATAAACAAAGCA
AAAATACGATGCAGTTGGAGGAGTTACAAGTGATGGcaacttatttaaaa
aatgatgaagCTACTGCCATGTTTGATAGTCCGAAAATTGGCGTCCCTTG
ATTTCAGGGGGGAATCTTTGTAGAAATTCTGAGAAACTTTTGTGGAGATA
ATGATTACTATGCTCATTATGAACACAATGCTGACAAAATCTACCTGTTT
TTTGTTTAATGATTTAAGATTCTTCTTTGCGGATTTTATTGTTGAATTTA
CGATTTTTTAATGCTTAAAATTAACCCAACATTGAAATAGAGTAGAATTC
ACTCCTTTGGGTGAGAGAATCTACACAAGTTACGCGATTACACGTTACGT
TTTGATATCAATTTACAAATgctctaaaaatttgacgcaTTTCAATATTA
TGATTGAAATGTTAATACTATTATTTTAGTTATATCACACTCAAGTCCTT
TTTAAATCAATATTTTGTATACTATGATACTACTACTTATTTAAATTTTC
CTTTTGCTCTTTTTTTCTATACTCTTGGGTTTGTAACATTGTACATTAGT
GATAAAATTTTATAGATTTCTATTTTCCGTTagataacttttgaaaaata
atttacgAAACATGATTATTGGTTCATtacaacaaatatttttgtaaatt
ccaaATATTatattaagattttgaaaaatgttgaaattttatagagattt
atttagttttaaatttatttacttCAATGTTTATCATTAAGTACGGCTAA
ATTTTTAAACTACAGGtattagtagagggcattttttAAAATCGCTTGAT
TGTTttgtcaaagcacttgttatacatttttgtaGGGGTAGGTGAATCAA
AATTACTtaagttccaatttttttcggacactttggtttgattttcggac
aaatatgacggtctcaggcaaagatcatagggtcaaaaattaatgaaatt
ttagcttgagaaaacggaggcCTGTTGTATATTtctggaaagctctcaaa
aattaagattagagatatattgcaagtataggtgatttctgtacctatat
cgagatattaacccctcaaaaacagtgtttttcagccagctgttttgtcc
agttttttcgctttttgagttaggtactgaaatcacctatactcgcaata
tatgtCTAATCTTAattgaaatcacctatactcgagcttaggatctgagg
atccaaaagctcaaaaatagtccaatagggctcagaatatagcctggaag
tctataaacccctcacgaattgaaatactcgaatatcaattagcccaaaa
gtgactttctcgcccgaactccaaatttcgaaaaacgaag Run BLAST on NCBI transcript from alignment at scaffold_440:520993..522982+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065585 ID=TCONS_00065585|Name=TCONS_00065585|organism=Clytia hemisphaerica|type=transcript|length=1990bp|location=Sequence derived from alignment at scaffold_440:520993..522982+ (Clytia hemisphaerica)
tttgtttattaTATTTCTTGTAAATAAAGCAGTTGCAGATCTTGCTATGA
AACTATAAAATAGAACTTAGAATTTCTTTAGTCTACATGATAGACAGCTG
CAGACTTTTAGGCTTTACctaagagtaggagttttatgCTCGAAGCGatg
gaagatatgacgtagcctaccaTTTCTTACTCCCTTCAaactaagaaaat
atttttctttttaggttGCTATGGTGGAGATTAACCTAGATACTGGAGTC
CCTCAAGGACTTGCCATCTTGTTTAGTTTTACAACTACCATTTTGATTTC
AGTACACGTGTTTGCACTAATGATCTCAACGTGTATTTTACCAAATATCG
AAACAGTCGAATTGATGCATAATAGCGTTTACGTACAGCAGCAGCTTGGA
GACAAAACATTAGCAAGTCATTCACCACATcggaaatttcgaaaatatat
TGAGGTTGCTTGGATATTTAGTACTGGTTTAGGTGCCTTGttatttttaa
ttgaaattcCCATTTTAATGTGGGTGAAATTTTACTATTTGAGTATTTAT
GCTGCATATGTTTCGATGGGAATTATGATACCAGTTTGtgtactttttgt
attttttgcttttaaatttTATCGGAAATTGGTTGAACATAAACAAAGCA
AAAATACGATGCAGTTGGAGGAGTTACAAGTGATGGcaacttatttaaaa
aatgatgaagCTACTGCCATGTTTGATAGTCCGAAAATTGGCGTCCCTTG
ATTTCAGGGGGGAATCTTTGTAGAAATTCTGAGAAACTTTTGTGGAGATA
ATGATTACTATGCTCATTATGAACACAATGCTGACAAAATCTACCTGTTT
TTTGTTTAATGATTTAAGATTCTTCTTTGCGGATTTTATTGTTGAATTTA
CGATTTTTTAATGCTTAAAATTAACCCAACATTGAAATAGAGTAGAATTC
ACTCCTTTGGGTGAGAGAATCTACACAAGTTACGCGATTACACGTTACGT
TTTGATATCAATTTACAAATgctctaaaaatttgacgcaTTTCAATATTA
TGATTGAAATGTTAATACTATTATTTTAGTTATATCACACTCAAGTCCTT
TTTAAATCAATATTTTGTATACTATGATACTACTACTTATTTAAATTTTC
CTTTTGCTCTTTTTTTCTATACTCTTGGGTTTGTAACATTGTACATTAGT
GATAAAATTTTATAGATTTCTATTTTCCGTTagataacttttgaaaaata
atttacgAAACATGATTATTGGTTCATtacaacaaatatttttgtaaatt
ccaaATATTatattaagattttgaaaaatgttgaaattttatagagattt
atttagttttaaatttatttacttCAATGTTTATCATTAAGTACGGCTAA
ATTTTTAAACTACAGGtattagtagagggcattttttAAAATCGCTTGAT
TGTTttgtcaaagcacttgttatacatttttgtaGGGGTAGGTGAATCAA
AATTACTtaagttccaatttttttcggacactttggtttgattttcggac
aaatatgacggtctcaggcaaagatcatagggtcaaaaattaatgaaatt
ttagcttgagaaaacggaggcCTGTTGTATATTtctggaaagctctcaaa
aattaagattagagatatattgcaagtataggtgatttctgtacctatat
cgagatattaacccctcaaaaacagtgtttttcagccagctgttttgtcc
agttttttcgctttttgagttaggtactgaaatcacctatactcgcaata
tatgtCTAATCTTAattgaaatcacctatactcgagcttaggatctgagg
atccaaaagctcaaaaatagtccaatagggctcagaatatagcctggaag
tctataaacccctcacgaattgaaatactcgaatatcaattagcccaaaa
gtgactttctcgcccgaactccaaatttcgaaaaacgaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065585-exon-scaffold_440-1491911889:520993..522982 | TCONS_00065585-exon-scaffold_440-1491911889:520993..522982 | Clytia hemisphaerica | exon |
| TCONS_00065585-exon-scaffold_440-1510915933:520993..522982 | TCONS_00065585-exon-scaffold_440-1510915933:520993..522982 | Clytia hemisphaerica | exon |
| TCONS_00065585-exon-scaffold_440-1575043694:520993..522982 | TCONS_00065585-exon-scaffold_440-1575043694:520993..522982 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_440 | supercontig | scaffold_440:520993..522982 + |
Blast
BLAST of TCONS_00065585 vs. Swiss-Prot (Human)
Match: ORAI2 (Protein orai-2 OS=Homo sapiens GN=ORAI2 PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 8.061e-35 Identity = 78/185 (42.16%), Postives = 104/185 (56.22%), Query Frame = 2
Query: 215 VAMVEINLDTGV--PQGLAILFSFTTTILISVHVFALMISTCILPNIETVELMHNSVYVQQQLGDKTLASHSPHRKFRKYIEVAWIFSTGLGALLFLIEIPILMWVKF----------------YYLSIYAAYVSMGIMIPVCVLFVFFAFKFYRKLVEHKQSKNTMQLEELQVMATYLKNDEAT 715
VAMVE+ L+T P+ L I FS TT+L++VH+FAL+ISTCILPN+E V +HN + S SPH + YIE+AW FST LG LLFL E+ +L W+KF + AA VS IM+PV ++FV F FYR LV HK ++ ++EEL + L E +
Sbjct: 76 VAMVEVQLETQYQYPRPLLIAFSACTTVLVAVHLFALLISTCILPNVEAVSNIHNLNSI----------SESPHERMHPYIELAWGFSTVLGILLFLAEVVLLCWIKFLPVDARRQPGPPPGPGSHTGWQAALVSTIIMVPVGLIFVVFTIHFYRSLVRHKTERHNREIEELHKLKVQLDGHERS 250
The following BLAST results are available for this feature:
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