TCONS_00065580 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065580
Unique NameTCONS_00065580
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065580 ID=TCONS_00065580|Name=TCONS_00065580|organism=Clytia hemisphaerica|type=transcript|length=843bp
gCTATAAAGAtgggaaattacaaatttgtGTCAAATgtcaaattaacttt
tttttgatattCAATATTCCTGTGAGAACGGATCGAGTTCGAAACATTTC
gggaaaatcaaaatattctttaTCACCGTTCaacaaattaactttttttg
atattatgacattttgaaaaaaaattgttttactgTACACCATGTTACAT
AAATTTTGACTTTACACAGcaaataaaatatattaatcTGAGAAAAATAT
CATCTGGGCTAAGGCTAAAATGACGACTCAAAATAAAAGTATTTCTCCTT
GGAAGAATCCTTGCCTTTTTGGAGTTTTCAGTATCGAGGGATAAAGTGAG
TACAGtattttataaatatatttttaaactcAAGGATATAAGAAGATAAT
TTCTCGTCTCAACTAGGTTAGAAATGGGCTGTTTTACATTTTCATTACAT
AAAATTGGaggcattttgaaaaattacaaaatcaattttcaatctGACAC
TGAAATTctgctttgttttgaaaataattcctCTCGGCAACTGTATTATA
AAACTCATTTCTTTCTAGTTTCAGCTTTAATAACCCGTTTAGCTATGAAG
ATCCAACTTGTTCTCCTTCTATCAACATTGTTGCTACTACCCACAATAAT
GGCGCTTGTTGTTgttgagaaaacttttgaagaGAGACTCACTGATTATA
GCAAGACAGTTCCTTACATACCGCATAGAAATACAGAGGAGTCATTACTC
GAGTGCGAAAGATTTGTCACACGTTTATGTCGTGATAAAATGTATCGAAA
TGTCGATCATTTCAACAGGTATGTTTCTAATCATAAGTTCCTT
Run BLAST on NCBI

transcript from alignment at scaffold_440:441686..442528+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065580 ID=TCONS_00065580|Name=TCONS_00065580|organism=Clytia hemisphaerica|type=transcript|length=843bp|location=Sequence derived from alignment at scaffold_440:441686..442528+ (Clytia hemisphaerica)
gCTATAAAGAtgggaaattacaaatttgtGTCAAATgtcaaattaacttt
tttttgatattCAATATTCCTGTGAGAACGGATCGAGTTCGAAACATTTC
gggaaaatcaaaatattctttaTCACCGTTCaacaaattaactttttttg
atattatgacattttgaaaaaaaattgttttactgTACACCATGTTACAT
AAATTTTGACTTTACACAGcaaataaaatatattaatcTGAGAAAAATAT
CATCTGGGCTAAGGCTAAAATGACGACTCAAAATAAAAGTATTTCTCCTT
GGAAGAATCCTTGCCTTTTTGGAGTTTTCAGTATCGAGGGATAAAGTGAG
TACAGtattttataaatatatttttaaactcAAGGATATAAGAAGATAAT
TTCTCGTCTCAACTAGGTTAGAAATGGGCTGTTTTACATTTTCATTACAT
AAAATTGGaggcattttgaaaaattacaaaatcaattttcaatctGACAC
TGAAATTctgctttgttttgaaaataattcctCTCGGCAACTGTATTATA
AAACTCATTTCTTTCTAGTTTCAGCTTTAATAACCCGTTTAGCTATGAAG
ATCCAACTTGTTCTCCTTCTATCAACATTGTTGCTACTACCCACAATAAT
GGCGCTTGTTGTTgttgagaaaacttttgaagaGAGACTCACTGATTATA
GCAAGACAGTTCCTTACATACCGCATAGAAATACAGAGGAGTCATTACTC
GAGTGCGAAAGATTTGTCACACGTTTATGTCGTGATAAAATGTATCGAAA
TGTCGATCATTTCAACAGGTATGTTTCTAATCATAAGTTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041091XLOC_041091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065580-exon-scaffold_440-1491911889:441686..442528TCONS_00065580-exon-scaffold_440-1491911889:441686..442528Clytia hemisphaericaexon
TCONS_00065580-exon-scaffold_440-1510915933:441686..442528TCONS_00065580-exon-scaffold_440-1510915933:441686..442528Clytia hemisphaericaexon
TCONS_00065580-exon-scaffold_440-1575043694:441686..442528TCONS_00065580-exon-scaffold_440-1575043694:441686..442528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:441686..442528 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.10709	0.349321	0	0	0.15705	0.0884505	0	0.290753	0.433479	0.43396	0.947635	0.926528	0.105519	0.626902	0.0865148	0	0.184871	0.151158	0.388006	0.241096	0.374006	1.03079	0	0.390848	0.444263	0.372431	0.247935	0.285464	0.266091	0.443573
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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