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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065566 ID=TCONS_00065566|Name=TCONS_00065566|organism=Clytia hemisphaerica|type=transcript|length=855bp
cGTCAAAGTGCTTACCTTCTCTTTCGCGGACCAAGATTAACTGATCTTCC
ATGAAAATGATTAACTGATCTTCCTATAAATAGATCGTGCCCAACTGAAT
GACTAACTAACTTTATGGTTTTATTACGTATTTTTCGGTTTGGAAATGAC
CAGTTAATTCATCCTCCGGGAAAGAGAATTTTAATCACTTTGACggtaat
aaaaagaaatatacaaaaattggAAGAAGAAGAACATTAGAAAAACTACA
GTTCACCAACACTGAAATCATCACGTCCGAAGAACAACAAATATATTGTA
ATCAAGAAATTAACACCATACCCTAACACACCAAACGTATAAAATCCCAC
GTGTTGGAATAAAAATCCGCCTATGGTGGGCGCCACCGATCTAATACTGG
AATGGGTGCAAAGTGTCACGCCCAGGGCGGATCCTGTCTCCTCTTTCTTC
ACGACTTTTGTTATGATAGACGTTGTCACGATATGTAGTAAAGAACCGCC
AACAGTCAAAGGCTCTAAATGTTCACGAATGTGTGTCGTGTCTCGTGGAA
TCAAGGCTAAAGTTACCAATATACATAAAACGTCTACGACTATAGCAACG
AAGAATGGAATTCGATTTCCAAAGTGTGACGTAATGAATCCACCAATGCC
GGAACCGACAATCATACCCAGTCCACTGGAAACGCCCAATTTTCCCATCA
TGTCCGCCCGTCCTTCAGGCATTACACAAGACATCACAACAGGAATACAT
ACATAAATAAATTGACATCAAAAAGGCGGAGCAATCAATACAAACCGACA
CTGGCTTTTGCTTTATCACAATTATTGGTCATACACGAAAACCACATGAA
GAGGC Run BLAST on NCBI transcript from alignment at scaffold_440:366670..375993+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065566 ID=TCONS_00065566|Name=TCONS_00065566|organism=Clytia hemisphaerica|type=transcript|length=9324bp|location=Sequence derived from alignment at scaffold_440:366670..375993+ (Clytia hemisphaerica)
cGTCAAAGTGCTTACCTTCTCTTTCGCGGACCAAGATTAACTGATCTTCC
ATGAAAATGATTAACTGATCTTCCTATAAATAGATCGTGCCCAACTGAAT
GACTAACTAACTTTATGGTTTTATTACGTATTTTTCGGTTTGGAAATGAC
CAGTTAATTCATCCTCCGGGAAAGAGAATTTTAATCACTTTGACggtaat
aaaaagaaatatacaaaaattggAAGAAGAAGAACATTAGAAAAACTACA
GTTCACCAACACTGAAATCATCACGTCCGAAGAACAACAAATATATTGTA
ATCAAGAAATTAACACCATACCCTAACACACCAAACGTATAAAATCCCAC
GTGTTGGAATAAAAATCCGCCTATGGTGGGCGCCACCGATCTAATACTGG
AATGGGTGCAAAGTGTCACGCCCAGGGCGGATCCTGTCTCCTCTTTCTTC
ACGACTTTTGTTATGATAGACGTTGTCACGATATGTAGTAAAGAACCGCC
AACAGTCAAAGGTATACACGTCAAACAAAACACATATATACTTTCCGCGA
TAATGAGATATAAGAATCCAACAGCCATGGTAATAGTTGAGATAATAATT
AATGGGCCGTCGCTCACGTGACGGCAGAATAAACCAATCAGGTAGCCTTG
TGTGATCATGCCGACCACTCCAAGATAGGATAACACCATACCGTTCTCCT
TCGGTGACAGTTTATAATAATCCATAAGGAGGAGTGTAAACATGGCGGAT
AAAACAGAGAATGGAAAAGCCGTAATGATTTTGATAGTCAGTAAGTAAAT
CATATGTTTTCGTTTCGTTACAGCTACTAATTCACCGATTCCTAAGAAgg
atttctttttctcttcttctttacattttattttctcTAACGATTCTTCG
TTTTTACGTTTAGGCTCTAAATGTTCACGAATGTGTGTCGTGTCTCGTGG
AATCAAGGCTAAAGTTACCAATATACATAAAACGTCTACGACTATAGCAA
CGAAGAATGGAATTCGATTTCCAAAGTGTGACGTAATGAATCCACCAATG
CCGGAACCGACAATCATACCCAGTCCACTGGAAACGCCCAATTTTCCCAT
CATGTCCGCCCGTCCTTCAGGGTAAGTGATATCACTGATTATAATATACA
TACTTTGTAAAGGATGAGCTGCTATTCTCGGCACCTTAGCTAAGAAGAGC
ATTGGTATTGTCCGAGCCACGCCCAACATAAAGTAACTGATCATAAGCAT
TACAAAAGCGATTATAAGCGTTAAACGCCCTCCATAGATATCTGACGCCC
AACCACAAATGGGTCCGCCAATCAGATTCATGATAGCATGAAATGATATT
GTATAACCATATACTTGCGGGTTGACGCCCAAAGATTTTGTAAGATATGG
GTACGAAGTGTTTTGTATAAAGAAGCCCACTGATTGGACGAAAGCTGCCA
CGTGTAGTGCGATGAATATTAAAGTGATTTTTCGTTGAAAATGAGGCTCG
ATTTGTGTGTCTTCATCATCTATCGATGCAATCGTCTTTTTAACAAAGCt
atgaaattttcgttttttggctGTGAAATCGGATTTCGAGTTCATGTTGT
TTCCATTGGCTGTATTGCCTGAATCAGATGTCTGTTTTTCTTTCGCTGGC
ATTGTGTTTCCcgtcttgaaaaaaaatttcttatattAATCTTTTTACTC
TCCAAGCGAGAGATACTAGGTTGCCATTTCTTCAAATTATGTATGCCCAA
TTTTTGAATCTTCTTTGCTATTGCTTAATTTTCTCAAAGCCTCTCctaat
tgtttatttttggtCAGCCACAGATTCAATTTTCCAATATACCGGTAAAA
ATattacaatttttaaaaattcatttcaatataGAAATCTGCATGTTCGA
AACTTCTCGTGTATTtcataaaagaaatttgtcGGCGAAACCTCCATGAT
CTACAATTGTGATTGGTCGATAAAGCTCGATTTccttttcatccaatcag
attgcacGATTTTTGAATgccgtttagttttgttttattAACATTGTATT
GTTTCTGCTTGGGTGAACATTCgaacatttgattttttctcaGTTGAGca
tgattttcttcttcatgtTATTGATATCACTTATAATATCCCCGCTGTAA
ACAAATTTGTTTGTATGCTTCTTGATTGTGATTTAGACTCcagcacgttt
ttttatatcaGCTCAAAGGCTAATGCTAGAAAATTTAGAACGGTTGGATT
ACTTTTTATgggtacaaactttcgcgagcagaaattttcgcgaggtcGAG
AAATCGCGAAACcctacgacatttactttcgcgaatttgataaaaaatac
tttcGCGAGTATAAACTTTGGCAATTTTTAGGTATATTTTAAGtagaaaa
ttaaagttttcGGTGCATAAAACCAGTGTTTTGATCGTTCGAATGAACTC
AAACCACAATTGATGGACTTTTGCATAATTTCTACACTAAGTTTTATCCT
TGTTATCATCAAAGAggaaaatttgagcaaatttccttttcagatttttt
ttttggctagaataaactttcacgaattaccctctcaagaattttcaaag
acatttactttcgcgaaaaggacTAAAATTCGAAAAGCTAAGGGCAGTCC
TCACAGCTTGAGGTTCTTACCAAGAAGTCTTGCAAATGAGTCCTATTCAT
CCAATTTGAAATgcgaataaaccagctgcgctggaaggtcagcctaaatt
gcttaatatgattagaaagatatatgttgttaaaaattgatatgatttac
taagacgagagtaaaaaaatcatcaaatttacgtTTGTACACAATATGGA
TTAACGAAAATATGCCATGTTACAATCTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCGAT
TCACataggagcggtactttaatatacttgatcaatttccatttacgctt
tataataattatctccaagtcggtccaaaaaattAAACGTAACtaccagt
gaaaaacgcaagtctagaaaaaaatcatatttgcgtcaatataatttgat
gaagaactttgGTCTTTCTCGATTCGCataggagcggtactttaatatac
ttgatcaatttccatttacgctttataataattatctccaagtcggtcca
aaaaattAAACGTAACTACCAGTGAAAAACNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgagcggt
actttaatatacttgatcaatttccatttacgctttataataattatctc
caagtcggtccaaaaaaacaaacgtaactgccagtgaaaaatgcaagtca
tttttgcgtcaatataatttgataaagaacttcgttccttctcaaattta
cataggagctgtactttaatatacttgaacgatttccatttacgctttat
caatattatctccaattgtccagaagaacaagcatataaaatttctataa
atgtatcaaataaaaaaaacactcaagttcgagaaaacattatttttgtg
aatgATCAGATAATTAAGCTGTGAACTGTAATATATGTACACTCCATCAA
ATTCCAGCAATTGTTGGTGGTTATTCTATATtcaagtccaaaatgaaaaa
atatgttttcatgctacaaaaTAATGAGGTCTAGCAGGTAAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCTAATAATCT
AACTCCAGTGTTGTATCTTCCTtagttataagtttaaaagccaCTTCAAC
AAAATATAATGATTGTATATAAAATAAAAGCTGGCAAGAAATAaacaacg
aacgaacgaacgaaaaagcACCGCtttggcagccatattgaattgttttt
aacACATATCGGGAAACCAAACNNTGCCCTAAAAAAGCTTGAGAGTAAAT
ACACAGATCGGGAGACCAAACTTAACCCGATcggataaaaactttagaaa
tcggaataaaaaaaccaaactcTTAAGCGGCGGCTGGAAaaaagggattt
gaagggtcatcgGGGCTGACCAATAATCTAAAATTTTATAGTTGATGTAG
CTAGGCCTGCGTTTTAATAtaagaaaaaatcacatttttataaacataaA
TCTTATAAGCATACCAAGCCTGAGAATTGTCAAATAAATGAATTTATGCA
CACGCTCTTAccttaagaaaagaaattttcgcgggaagaaaattccgcga
aacaagaatattcaaatgatttaaaaatcacCTATAGAATTGGtcttttt
ggggaaaaataagccatactttaaagaaaaatttctctctggcgcgaaat
taaattctgcgaaacttccgaattttgatctgtgaaccgcgaaattaaat
tctgcgaaaattttttttccttaagGTATTGGTATACATTGAAAACTTGA
TACCACAAAAATACTGTAGAACGGGGAAGCAATTGGCACCATCGGTTTTT
CTTCAAACATTGGATAACATTGAATAGAGCAATTGGAGTCAACTTATAGG
TTGGACCCAAAATCGATTAAAACTTAtcatatttctaaatttgataTTAA
TTTTTTGCTTCCATATTATATTGCATCCATATTCGCACCTTGCTTAAATT
TCTCGCATAAATACGATAAATGTTCATTTTTAAGGTTTATTTCATAACTA
AAAAAAATCGATTGTATTCTCTATCGAGAACATGGTGGCCGAAAGGCTGG
TTTGCTTTGGATAATTTGACCGTTTATTTGTTGTTTCGGTAAACAGTGGA
CTCTCGCTGATTCCAACTTTTatcatttgaatctttctataatttgcaag
TCCCTGTTGATATAGATGCCATCGTAAAATAATTTCCATAAAACGAATCT
CTCTCAGCTAAATTCGAGAAATGGCTTTTTGGCCAAATTCGAAGAATGCT
TGAAGTTTAGTTGTTAGGATATTTAAATTATACTTGGggaaaatttgtta
aaaaagttCATGTTTTCGGATAGTTGTATTAGAAAACAGCCTCGATGTAT
TAAATGAATTCGATGACGCCATCACACAATGTGTAATCCGTTAGAAAATA
ATTATATGACTTGCCAAAACGTGAGTATCTGAATGACATGTTTACAATTT
CGCTAAAACGTTTAGCCAGTAGAAACATTTCGTTTTTATTGTAATTGACT
Ctgaaaatacagttgacgctctgtaattcgacgttctactattcgatagg
ctcccttattcgatgaaatttaaagtccccgtcaacaagaaactcttata
aacgacgctcccttattcgataagttcccttattcgatgaaaatccaatt
ccccttgaagatcgaattagagagcgtcaactgtacctTCAACACCAAAG
GGATGTCGGTAACCGATAATAACGGCTGGCTGGCTAAAATGCACGAGTAC
GCTTGAATTGCCTCAATGGTGACCAAATAACCTTTATATTATTATGTTTA
AAATCAAAGTCGAGAAGTTCCAAGTACTTAAGAACCGTTTGTAATTCAAA
TTTCAGTTTTGATTGATCAGGTACTGGCTAAACGCATAATTACTTGTGGT
TACCTCTAATTGTATGATTTCCGTCATGCGGAAATGCTTTTTAACTGAAA
ATGCATTTTTGTAATTTATGAAGCATTTCTTTTTGTTCTGTGAGTCTTTC
ATTGCTCTCTCAATTTGTCCGACACCTATGCTTGGATGAAACAGCtcaag
attttaattttgggaTTCTTACTTTGAGggagcccagctggcacacaacg
tagtttcgacgtttatctaacctttgcaacgtccatataacgttagatga
atgttgaaacaacgttgtgtgccagctggttgGGGGCTTTGTCGTTAGTC
CTGGCTCTAATCAACAAAAGAAGGTCCAGGGTGgttattattttgttata
ttTCCTAGACTTTTTACTTGTTATTCTTTAGATAAAACATCCCTTTCTCT
AGTCTAGTAAGTTTTTCCAAGTTCCTTGGTTTCTCAGGCTACAAATAAAG
GGCTTCTAAATCCTTCGAGTAGCTAATTCTCGTGTAAGGAAAGTAatgtt
ttcttttatcaaagACCGAAACAGGAATATTCTTCGTTGTAGAGATTGTC
AAAATAATTCGCTTTAAGTCAAATATGTTTAGCTAATATTAGTTCTTGTT
TTTCCAGGTTAATTTTACTAAGATTTTAATGGGTTTGAGATTGACAGTGT
TTTTGTTGAATGTACAGCCTGTTGTACAAATTTCAAGAAAGAATTTATTG
ATATTGTTCATTATTCAAAGTTACAAAGTCTCCATATTTAATGGACACGC
TTTTATTCTAATTTCTAATTTTGGAACAATCGCGGAGAATTTTCGAGTGG
TCCGAATGGTACGGGAAATGCCGAGAACATATCTAGAACAGTAGCGTGGG
GACAGGGGGCAATGCCCCTCCTCCCAGCGGCCGATTTTTTTGAGGGGCGC
CGAAATACAAAGGGCGCAAAGAGACGCCTCTTattactaatttcggcgcc
cctttgctCTCTTTTTAGGCTGtgcgcatccccagaatttattttgttat
aggggatgcgtatcgtgtatgaaattctcgtccgagagttacctcaaatt
tggggtaaccaaaatttgcataaatttacatgTTGTTTCttaattatcaa
ttttcattcattgaacaaagaaaaaaagaagtcattgtattgctatgacg
cataatcaaaaaagaaaaaagaaaagacggggttaagttgggacagaaat
attttagacgatacgcatcccctatatcaaatcatatcagagggtaTGCG
TGCAGCCTACTCTTTCACATATTAGATATGGcagtttttcagccaaaaag
ccaaaatttttgtgctcgcttcgctcgcgtaattttttaaaatatttact
ttCATAGGAagttccaaaatcaaaatcttctaaaattgcctccccaCTTT
GCCCGAATTTTGCTCCACCCACCACGCTACTAATCGTAAGCCTGTCCCTG
ATTTACATGGtaatttttttggcttaaaagtAAAGATGGATATACAGGTT
CAAGTTTGGCATTTTGAGTCTCGTCGCTCTTTTATGATTATTCTTATAGT
TCTACTTTTTGTTCAATCAAAGAGTCAATTAGGTAACATCGGAAACTGAA
GTATACGGTAATCGATTAAGTTTGAAAGATCCTGTCTTCATGTTGTcatc
aaaatataaaagatttttcataagaacatttttgaacaTTAGTCAAAGta
tatataccttatcggcgtaaaaaaaggctaaaattttgcaatttttacct
aaaaacgGCGTTAATTCTTTACCAAAACTTCAcaaaaatcaatgattttc
aatggaattttcaacagtttaatactgaaagatgacattttaatataaat
tttagttaatacttactgttttgaagtctgaatagcgatttttacaagtt
ttattggcattatttacggccctaattggcgtaagccaaAAATTAGGTTG
TGGCGGAATAaaggccggcgttaaattagggccggcgtaaaaagggccga
taaggtactacCAGAGTGTATCCAACTTTTACTGCAACGTAGTACAATCA
GTTCTGGCCACAGAGAATAGTCCGATATTTCTATATACATCCTTTTACTA
TAAGATCTTGCTTCTACATTAGAATTTTCATCCTGCTTCCTAAAACTTTG
AATCAGATCATCATACTTTGAGGACATTGCTTTGTTTTTTTGATTGAGGA
TACGGACTTTCTACTTACACAAATTGAACCACCGCGGACTTATAAGTGCT
ATAAGTGAATTTATTTCGAGTTTCGAAGAGAGTACCAACACAAGATAATC
GGACCATCAAAACAAGGGAGTTGATCTAGAAATCACTTCGCCACGCTAGC
AAGGATACGCAGATTCACTAAGgaatcaatgttcttataatgaTTACATT
GTATCTTTTTGAATGTCCTTTTCTTTCTATAGCATTACACAAGACATCAA
TCACAACAGGAATACACNATGTCCTTTTCTTTCTATAGCATTACACAAGA
CATCACAACAGGAATACATACATAAATAAATTGACATCAAAAAGGCGGAG
CAATCAATACAAACCGACACTGGCTTTTGCTTTATCACAATTATTGGTCA
TACACGAAAACCACATGAAGAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065566-exon-scaffold_440-1491911889:366670..367180 | TCONS_00065566-exon-scaffold_440-1491911889:366670..367180 | Clytia hemisphaerica | exon |
| TCONS_00065566-exon-scaffold_440-1510915933:366670..367180 | TCONS_00065566-exon-scaffold_440-1510915933:366670..367180 | Clytia hemisphaerica | exon |
| TCONS_00065566-exon-scaffold_440-1575043694:366670..367180 | TCONS_00065566-exon-scaffold_440-1575043694:366670..367180 | Clytia hemisphaerica | exon |
| TCONS_00065566-exon-scaffold_440-1491911889:367583..367790 | TCONS_00065566-exon-scaffold_440-1491911889:367583..367790 | Clytia hemisphaerica | exon |
| TCONS_00065566-exon-scaffold_440-1510915933:367583..367790 | TCONS_00065566-exon-scaffold_440-1510915933:367583..367790 | Clytia hemisphaerica | exon |
| TCONS_00065566-exon-scaffold_440-1575043694:367583..367790 | TCONS_00065566-exon-scaffold_440-1575043694:367583..367790 | Clytia hemisphaerica | exon |
| TCONS_00065566-exon-scaffold_440-1491911889:375858..375993 | TCONS_00065566-exon-scaffold_440-1491911889:375858..375993 | Clytia hemisphaerica | exon |
| TCONS_00065566-exon-scaffold_440-1510915933:375858..375993 | TCONS_00065566-exon-scaffold_440-1510915933:375858..375993 | Clytia hemisphaerica | exon |
| TCONS_00065566-exon-scaffold_440-1575043694:375858..375993 | TCONS_00065566-exon-scaffold_440-1575043694:375858..375993 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_440 | supercontig | scaffold_440:366670..375993 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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